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6PHN
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BU of 6phn by Molmil
Crystal structure of glucagon analog composed of D-amino acids with mono-stereoinversion at position 23 (L-Val23) in space group I41 at 1.33 A resolution
Descriptor: D-glucagon L-Val23, SODIUM ION
Authors:Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D.
Deposit date:2019-06-25
Release date:2020-07-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement.
To Be Published
5F4Q
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BU of 5f4q by Molmil
Crystal structure of the human egg surface protein Juno
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ...
Authors:Aydin, H, Sultana, A, Lee, J.E.
Deposit date:2015-12-03
Release date:2016-06-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular architecture of the human sperm IZUMO1 and egg JUNO fertilization complex.
Nature, 534, 2016
7KPH
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BU of 7kph by Molmil
SARS-CoV-2 Main Protease in mature form
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2020-11-11
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7PT5
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BU of 7pt5 by Molmil
Crystal structure of the CH domain of human CEP44
Descriptor: Centrosomal protein of 44 kDa
Authors:Rosa e Silva, I, van Breugel, M.
Deposit date:2021-09-26
Release date:2022-04-06
Last modified:2022-04-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural validation and assessment of AlphaFold2 predictions for centrosomal and centriolar proteins and their complexes.
Commun Biol, 5, 2022
5U5K
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BU of 5u5k by Molmil
Crystal structure of EED in complex with 3-(3-methoxybenzyl)piperidine hydrochloride
Descriptor: (3R)-3-[(3-methoxyphenyl)methyl]piperidine, FORMIC ACID, Polycomb protein EED
Authors:Bussiere, D, Shu, W.
Deposit date:2016-12-06
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structure-Guided Design of EED Binders Allosterically Inhibiting the Epigenetic Polycomb Repressive Complex 2 (PRC2) Methyltransferase.
J. Med. Chem., 60, 2017
6JDO
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BU of 6jdo by Molmil
Crystal structure of N-acetyl mannosmaine kinase with AMP-PNP from Pasteurella multocida
Descriptor: CALCIUM ION, N-acetylmannosamine kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Thanuja, G, Ramaswamy, S.
Deposit date:2019-02-02
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Structure and Function of N‐Acetylmannosamine Kinases from Pathogenic Bacteria.
Acs Omega, 5, 2020
6AW0
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BU of 6aw0 by Molmil
Crystal structure of CEACAM3 L44Q
Descriptor: CHLORIDE ION, Carcinoembryonic antigen-related cell adhesion molecule 3, GLYCEROL, ...
Authors:Bonsor, D.A, Sundberg, E.J.
Deposit date:2017-09-05
Release date:2018-05-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:TheHelicobacter pyloriadhesin protein HopQ exploits the dimer interface of human CEACAMs to facilitate translocation of the oncoprotein CagA.
EMBO J., 37, 2018
7KJD
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BU of 7kjd by Molmil
F96M epi-isozizaene synthase: complex with 3 Mg2+ and risedronate
Descriptor: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID, MAGNESIUM ION, SULFATE ION, ...
Authors:Ronnebaum, T.A, Gardner, S.M, Christianson, D.W.
Deposit date:2020-10-26
Release date:2020-12-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An Aromatic Cluster in the Active Site of epi -Isozizaene Synthase Is an Electrostatic Toggle for Divergent Terpene Cyclization Pathways.
Biochemistry, 59, 2020
8R5U
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BU of 8r5u by Molmil
VIM-2 metallo-beta-lactamase in complex with benzebisheterocycle compound 14
Descriptor: Beta-lactamase VIM-2, FORMIC ACID, ZINC ION, ...
Authors:Hinchliffe, P, Spencer, J.
Deposit date:2023-11-17
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Rational Design of Benzobisheterocycle Metallo-beta-Lactamase Inhibitors: A Tricyclic Scaffold Enhances Potency against Target Enzymes.
J.Med.Chem., 67, 2024
6PIA
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BU of 6pia by Molmil
Crystal structure of Marinobacter subterrani acetylpolyamine amidohydrolase (msAPAH) complexed with 6-[(3-aminopropyl)amino]-N-hydroxyhexanamide
Descriptor: 1,2-ETHANEDIOL, 6-[(3-aminopropyl)amino]-N-hydroxyhexanamide, Acetylpolyamine amidohydrolase, ...
Authors:Osko, J.D, Christianson, D.W.
Deposit date:2019-06-26
Release date:2019-09-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and Function of the Acetylpolyamine Amidohydrolase from the Deep Earth HalophileMarinobacter subterrani.
Biochemistry, 58, 2019
8QK5
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BU of 8qk5 by Molmil
Structure of K. pneumoniae LpxH in complex with EBL-3647
Descriptor: 5-[[3-(aminomethyl)azetidin-1-yl]methyl]-N-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide, MANGANESE (II) ION, UDP-2,3-diacylglucosamine hydrolase
Authors:Sooriyaarachchi, S, Bergfors, T, Jones, T.A, Mowbray, S.L.
Deposit date:2023-09-14
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria.
Proc.Natl.Acad.Sci.USA, 121, 2024
6AW7
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BU of 6aw7 by Molmil
2.15A resolution structure of SAH bound catechol O-methyltransferase (COMT) from Nannospalax galili
Descriptor: CALCIUM ION, Catechol O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Deng, Y, Hanzlik, R.P, Shams, I, Moskovitz, J.
Deposit date:2017-09-05
Release date:2018-09-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the catechol-o-methyl transferase (COMT) enzyme of the subterranean mole rat (Spalax) and the effect of L136M substitution
To be published
7KKQ
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BU of 7kkq by Molmil
Structure of the catalytic domain of tankyrase 1 in complex with veliparib
Descriptor: (2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium, Poly [ADP-ribose] polymerase, ZINC ION
Authors:Gajiwala, K.S, Ryan, K.
Deposit date:2020-10-27
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Dissecting the molecular determinants of clinical PARP1 inhibitor selectivity for tankyrase1.
J.Biol.Chem., 296, 2021
8RHI
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BU of 8rhi by Molmil
Lytic Transglycosylase MltD of Pseudomonas aeruginosa in a ternary complex bound to Bulgecin A and chito-tetraose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, ...
Authors:Miguel-Ruano, V, Hermoso, J.A.
Deposit date:2023-12-15
Release date:2024-04-17
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural characterization of lytic transglycosylase MltD of Pseudomonas aeruginosa, a target for the natural product bulgecin A.
Int.J.Biol.Macromol., 267, 2024
8Q9R
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BU of 8q9r by Molmil
Crystal structure of MADS-box/MEF2D N-terminal domain bound to dsDNA and HDAC9 deacetylase binding motif
Descriptor: Histone deacetylase 9 (HDAC9) binding motif peptide: EVKQKLQEFLLSKS, MADS box dsDNA: AACTATTTATAAGA, MADS box dsDNA: TCTTATAAATAGT, ...
Authors:Chinellato, M, Carli, A, Perin, S, Mazzoccato, Y, Di Giorgio, E, Brancolini, C, Angelini, A, Cendron, L.
Deposit date:2023-08-20
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Folding of Class IIa HDAC Derived Peptides into alpha-helices Upon Binding to Myocyte Enhancer Factor-2 in Complex with DNA.
J.Mol.Biol., 436, 2024
6PJ7
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BU of 6pj7 by Molmil
Time-resolved structural snapshot of proteolysis by GlpG inside the membrane
Descriptor: Peptide aldehyde inhibitor, Rhomboid protease GlpG
Authors:Urban, S, Cho, S.
Deposit date:2019-06-28
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ten catalytic snapshots of rhomboid intramembrane proteolysis from gate opening to peptide release.
Nat.Struct.Mol.Biol., 26, 2019
6F0R
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BU of 6f0r by Molmil
GLIC mutant E82Q
Descriptor: ACETATE ION, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:Hu, H.D, Delarue, M.
Deposit date:2017-11-20
Release date:2018-01-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel.
PLoS Biol., 15, 2017
6PJV
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BU of 6pjv by Molmil
Structure of Human Sonic Hedgehog in complex with Zinc and Magnesium
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Bonn-Breach, R.B, Jenkins, J.L, Wedekind, J.E.
Deposit date:2019-06-28
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structure of Sonic Hedgehog protein in complex with zinc(II) and magnesium(II) reveals ion-coordination plasticity relevant to peptide drug design.
Acta Crystallogr D Struct Biol, 75, 2019
7ZRQ
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BU of 7zrq by Molmil
1.68 Angstrom crystal structure of Ca/CaM-E140G:CaMKIIdelta peptide complex
Descriptor: CALCIUM ION, Calcium/calmodulin-dependent protein kinase type II subunit delta, Calmodulin-1, ...
Authors:Helassa, N, Antonyuk, S.
Deposit date:2022-05-04
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Calmodulin variant E140G associated with long QT syndrome impairs CaMKII delta autophosphorylation and L-type calcium channel inactivation.
J.Biol.Chem., 299, 2022
6B8F
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BU of 6b8f by Molmil
Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid
Descriptor: CALCIUM ION, FE (III) ION, Ferritin heavy chain
Authors:Zhang, L, Bailey, J.B, Subramanian, R, Tezcan, F.A.
Deposit date:2017-10-07
Release date:2018-05-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Hyperexpandable, self-healing macromolecular crystals with integrated polymer networks.
Nature, 557, 2018
8RCW
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BU of 8rcw by Molmil
Crystal structure of the Mycobacterium tuberculosis regulator VirS (N-terminal fragment 4-208) in complex with the lead compound SMARt751
Descriptor: 4,4,4-tris(fluoranyl)-1-[4-(4-fluorophenyl)piperidin-1-yl]butan-1-one, HTH-type transcriptional regulator VirS
Authors:Grosse, C, Sigoillot, M, Megalizzi, V, Tanina, A, Willand, N, Baulard, A.R, Wintjens, R.
Deposit date:2023-12-07
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.692 Å)
Cite:Crystal structure of the Mycobacterium tuberculosis VirS regulator reveals its interaction with the lead compound SMARt751.
J.Struct.Biol., 216, 2024
7ZZ9
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BU of 7zz9 by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a linear di-adenosine derivative
Descriptor: 3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid, CITRIC ACID, NAD kinase 1
Authors:Gelin, M, Labesse, G.
Deposit date:2022-05-25
Release date:2023-01-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Synthesis and structure-activity relationship studies of original cyclic diadenosine derivatives as nanomolar inhibitors of NAD kinase from pathogenic bacteria.
Eur.J.Med.Chem., 246, 2023
6F5C
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BU of 6f5c by Molmil
Structure of h. salinarum RosR (vng0258) grown from NaCl
Descriptor: CHLORIDE ION, HALOPHILIC WINGED-HELIX-TURN-HELIX DNA BINDING PROTEIN, SULFATE ION
Authors:Shaanan, B, Kutnowski, N, Shmuely, H.
Deposit date:2017-12-01
Release date:2018-08-22
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell.
J. Struct. Biol., 204, 2018
7PTB
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BU of 7ptb by Molmil
Crystal structure of the SPD-2 domain of human CEP192
Descriptor: Centrosomal protein of 192 kDa, NITRATE ION
Authors:Rosa e Silva, I, van Breugel, M.
Deposit date:2021-09-26
Release date:2022-04-06
Last modified:2022-04-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural validation and assessment of AlphaFold2 predictions for centrosomal and centriolar proteins and their complexes.
Commun Biol, 5, 2022
7KWX
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BU of 7kwx by Molmil
Spermidine N-acetyltransferase SpeG N152L mutant from Vibrio cholerae
Descriptor: Spermidine N(1)-acetyltransferase
Authors:Le, V.T.B, Tsimbalyuk, S, Lim, E.Q, Solis, A, Gawat, D, Boeck, P, Renolo, R, Forwood, J.K, Kuhn, M.L.
Deposit date:2020-12-02
Release date:2020-12-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:The Vibrio cholerae SpeG Spermidine/Spermine N -Acetyltransferase Allosteric Loop and beta 6-beta 7 Structural Elements Are Critical for Kinetic Activity.
Front Mol Biosci, 8, 2021

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PDB entries from 2024-08-28

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