Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4LJ1
DownloadVisualize
BU of 4lj1 by Molmil
RipD (Rv1566c) from Mycobacterium tuberculosis: a non-catalytic NlpC/p60 domain protein with two penta-peptide repeat units (PVQQA-PVQPA)
Descriptor: Invasion-associated protein
Authors:Both, D, Steiner, E.M, Linder, D.C, Schnell, R, Schneider, G.
Deposit date:2013-07-04
Release date:2013-11-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:RipD (Rv1566c) from Mycobacterium tuberculosis: adaptation of an NlpC/p60 domain to a non-catalytic peptidoglycan-binding function.
Biochem.J., 457, 2014
8J56
DownloadVisualize
BU of 8j56 by Molmil
Crystal structure of the FlhDC complex from Cupriavidus necator
Descriptor: Flagellar transcriptional regulator FlhC, Flagellar transcriptional regulator FlhD, ZINC ION
Authors:Cho, S.Y, Oh, H.B, Yoon, S.I.
Deposit date:2023-04-21
Release date:2024-02-28
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Hexameric structure of the flagellar master regulator FlhDC from Cupriavidus necator and its interaction with flagellar promoter DNA.
Biochem.Biophys.Res.Commun., 672, 2023
6VCH
DownloadVisualize
BU of 6vch by Molmil
Crystal structure of Nitrosotalea devanaterra carotenoid cleavage dioxygenase in complex with 3-hydroxy-beta-apo-14'-carotenal
Descriptor: (2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal, CHLORIDE ION, COBALT (II) ION, ...
Authors:Daruwalla, A, Shi, W, Kiser, P.D.
Deposit date:2019-12-20
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for carotenoid cleavage by an archaeal carotenoid dioxygenase.
Proc.Natl.Acad.Sci.USA, 117, 2020
2BDM
DownloadVisualize
BU of 2bdm by Molmil
Structure of Cytochrome P450 2B4 with Bound Bifonazole
Descriptor: 1-[PHENYL-(4-PHENYLPHENYL)-METHYL]IMIDAZOLE, 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, Cytochrome P450 2B4, ...
Authors:Zhao, Y, White, M.A, Muralidhara, B.K, Sun, L, Halpert, J.R, Stout, C.D.
Deposit date:2005-10-20
Release date:2005-12-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of microsomal cytochrome P450 2B4 complexed with the antifungal drug bifonazole: insight into P450 conformational plasticity and membrane interaction.
J.Biol.Chem., 281, 2006
6VEF
DownloadVisualize
BU of 6vef by Molmil
Cryo-EM Structure of Escherichia coli 2-oxoglutarate dehydrogenase E1 component sucA
Descriptor: 2-oxoglutarate dehydrogenase E1 component, ADENOSINE MONOPHOSPHATE, OXALOACETATE ION
Authors:Gao, H.
Deposit date:2019-12-31
Release date:2021-01-06
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.08 Å)
Cite:Cryo-EM Structure of Escherichia coli 2-oxoglutarate dehydrogenase E1 component sucA
To Be Published
8GBJ
DownloadVisualize
BU of 8gbj by Molmil
Cryo-EM structure of a human BCDX2/ssDNA complex
Descriptor: DNA (5'-D(P*CP*CP*CP*CP*CP*C)-3'), DNA repair protein RAD51 homolog 2, DNA repair protein RAD51 homolog 3, ...
Authors:Jia, L, Wasmuth, E.V, Ruben, E.A, Sung, P, Rawal, Y, Greene, E.C, Meir, A, Olsen, S.K.
Deposit date:2023-02-26
Release date:2023-06-21
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:Structural insights into BCDX2 complex function in homologous recombination.
Nature, 619, 2023
5BX4
DownloadVisualize
BU of 5bx4 by Molmil
Crystal structure of Thermoanaerobacterium xylanolyticum GH116 beta-glucosidase with Glucoimidazole
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLUCOIMIDAZOLE, ...
Authors:Charoenwattanasatien, R, Pengthaisong, S, Sansenya, S, Mutoh, R, Tankrathok, A, Tanaka, H, Kurisu, G, Ketudat Cairns, J.R.
Deposit date:2015-06-08
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Bacterial beta-Glucosidase Reveals the Structural and Functional Basis of Genetic Defects in Human Glucocerebrosidase 2 (GBA2)
Acs Chem.Biol., 11, 2016
6VHD
DownloadVisualize
BU of 6vhd by Molmil
FphF, Staphylococcus aureus fluorophosphonate-binding serine hydrolases F, KT129 bound
Descriptor: (2~{R})-2-phenylpiperidine-1-carbaldehyde, Esterase family protein
Authors:Fellner, M, Mace, P.D.
Deposit date:2020-01-09
Release date:2020-09-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural Basis for the Inhibitor and Substrate Specificity of the Unique Fph Serine Hydrolases of Staphylococcus aureus .
Acs Infect Dis., 6, 2020
6VBY
DownloadVisualize
BU of 6vby by Molmil
Cinnamate 4-hydroxylase (C4H1) from Sorghum bicolor
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cinnamic acid 4-hydroxylase, GLYCEROL, ...
Authors:Zhang, B, Kang, C, Lewis, K.M.
Deposit date:2019-12-19
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Function of the Cytochrome P450 Monooxygenase Cinnamate 4-hydroxylase fromSorghum bicolor.
Plant Physiol., 183, 2020
6VCN
DownloadVisualize
BU of 6vcn by Molmil
Crystal structure of E.coli RppH in complex with ppcpG
Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, RNA pyrophosphohydrolase, SULFATE ION
Authors:Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
Deposit date:2019-12-21
Release date:2020-02-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
8GJH
DownloadVisualize
BU of 8gjh by Molmil
Salmonella ArnA
Descriptor: Bifunctional polymyxin resistance protein ArnA, URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
Authors:Sousa, M.C, Mitchell, M.E, Gatzeva-Topalova, P.Z.
Deposit date:2023-03-15
Release date:2023-08-02
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Targeting the Conformational Change in ArnA Dehydrogenase for Selective Inhibition of Polymyxin Resistance.
Biochemistry, 62, 2023
8GY2
DownloadVisualize
BU of 8gy2 by Molmil
Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans
Descriptor: Alcohol dehydrogenase (quinone), cytochrome c subunit, dehydrogenase subunit, ...
Authors:Adachi, T, Miyata, T, Makino, F, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O.
Deposit date:2022-09-21
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Experimental and Theoretical Insights into Bienzymatic Cascade for Mediatorless Bioelectrochemical Ethanol Oxidation with Alcohol and Aldehyde Dehydrogenases
Acs Catalysis, 13, 2023
6V22
DownloadVisualize
BU of 6v22 by Molmil
Cryo-EM structure of Ca2+-bound hsSlo1-beta4 channel complex
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Tao, X, MacKinnon, R.
Deposit date:2019-11-22
Release date:2019-12-25
Last modified:2020-10-07
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular structures of the human Slo1 K + channel in complex with beta 4.
Elife, 8, 2019
8GY3
DownloadVisualize
BU of 8gy3 by Molmil
Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans
Descriptor: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), Cytochrome c subunit of aldehyde dehydrogenase, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Adachi, T, Miyata, T, Makino, F, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O.
Deposit date:2022-09-21
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Experimental and Theoretical Insights into Bienzymatic Cascade for Mediatorless Bioelectrochemical Ethanol Oxidation with Alcohol and Aldehyde Dehydrogenases
Acs Catalysis, 13, 2023
6V3C
DownloadVisualize
BU of 6v3c by Molmil
K2P2.1(TREK-1)I110D:Ru360 bound channel structure
Descriptor: CADMIUM ION, HEXANE, N-OCTANE, ...
Authors:Pope, L, Lolicato, M, Minor, D.L.
Deposit date:2019-11-25
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Polynuclear Ruthenium Amines Inhibit K2PChannels via a "Finger in the Dam" Mechanism.
Cell Chem Biol, 2020
8JC5
DownloadVisualize
BU of 8jc5 by Molmil
Crystal structure of PLEKHM1 RUN domain in complex with GTP-bound Arl8b(Q75L)
Descriptor: ADP-ribosylation factor-like protein 8B, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Qiu, X.H, Pan, L.F.
Deposit date:2023-05-10
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Mechanistic Insights into the Interactions of Arl8b with the RUN Domains of PLEKHM1 and SKIP.
J.Mol.Biol., 435, 2023
6V3R
DownloadVisualize
BU of 6v3r by Molmil
Crystal structure of murine cycloxygenase in complex with a harmaline analog, 4,9-dihydro-3H-pyrido[3,4-b]indole
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 9-[(4-chlorophenyl)methyl]-6-methoxy-1-methyl-4,9-dihydro-3H-beta-carboline, ...
Authors:Xu, S, Uddin, M.J, Banerjee, S, Marnett, L.J.
Deposit date:2019-11-26
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Harmaline Analogs as Substrate-Selective Cyclooxygenase-2 Inhibitors.
Acs Med.Chem.Lett., 11, 2020
8GHD
DownloadVisualize
BU of 8ghd by Molmil
The structure of h12-LOX in hexameric form bound to inhibitor ML355 and arachidonic acid
Descriptor: ARACHIDONIC ACID, FE (II) ION, N-(1,3-benzothiazol-2-yl)-4-{[(2-hydroxy-3-methoxyphenyl)methyl]amino}benzene-1-sulfonamide, ...
Authors:Black, K.A, Mobbs, J.I, Venugopal, H, Thal, D.M, Glukhova, A.
Deposit date:2023-03-09
Release date:2023-08-09
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Cryo-EM structures of human arachidonate 12S-lipoxygenase bound to endogenous and exogenous inhibitors.
Blood, 142, 2023
6VHR
DownloadVisualize
BU of 6vhr by Molmil
Structure of PE5-PPE4-EspG3 complex from the type VII (ESX-3) secretion system, space group I422
Descriptor: ESX-3 secretion-associated protein EspG3, PE family immunomodulator PE5, PPE family protein PPE4
Authors:Williamson, Z.A, Korotkov, K.V.
Deposit date:2020-01-10
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:PE5-PPE4-EspG3heterotrimer structure from mycobacterial ESX-3 secretion system gives insight into cognate substrate recognition by ESX systems.
J.Biol.Chem., 295, 2020
4LEO
DownloadVisualize
BU of 4leo by Molmil
Crystal structure of anti-HER3 Fab RG7116 in complex with the extracellular domains of human Her3 (ERBB3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RG7116 Fab heavy chain, ...
Authors:Schiller, C.B, Hopfner, K.P.
Deposit date:2013-06-26
Release date:2013-07-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:RG7116, a Therapeutic Antibody That Binds the Inactive HER3 Receptor and Is Optimized for Immune Effector Activation.
Cancer Res., 73, 2013
6V6T
DownloadVisualize
BU of 6v6t by Molmil
Solution structure of delta-theraphotoxin-Hm1b from Heteroscodra maculata
Descriptor: Delta-theraphotoxin-Hm1b
Authors:Chin, Y.K.Y, Chow, C.Y, King, G.F.
Deposit date:2019-12-05
Release date:2020-05-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A selective Na V 1.1 activator with potential for treatment of Dravet syndrome epilepsy.
Biochem Pharmacol, 181, 2020
6UUJ
DownloadVisualize
BU of 6uuj by Molmil
Structure of PE5-PPE4-EspG3 complex from the type VII (ESX-3) secretion system, space group P212121
Descriptor: ESX-3 secretion-associated protein EspG3, PE family immunomodulator PE5, PPE family protein PPE4
Authors:Williamson, Z.A, Korotkov, K.V.
Deposit date:2019-10-30
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:PE5-PPE4-EspG3heterotrimer structure from mycobacterial ESX-3 secretion system gives insight into cognate substrate recognition by ESX systems.
J.Biol.Chem., 295, 2020
5BX2
DownloadVisualize
BU of 5bx2 by Molmil
Crystal structure of Thermoanaerobacterium xylanolyticum GH116 beta-glucosidase with 2-deoxy-2-fluoroglucoside
Descriptor: 1,2-ETHANEDIOL, 2-deoxy-2-fluoro-alpha-D-glucopyranose, CALCIUM ION, ...
Authors:Charoenwattanasatien, R, Pengthaisong, S, Sansenya, S, Mutoh, R, Tanaka, H, Kurisu, G, Ketudat Cairns, J.R.
Deposit date:2015-06-08
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Bacterial beta-Glucosidase Reveals the Structural and Functional Basis of Genetic Defects in Human Glucocerebrosidase 2 (GBA2)
Acs Chem.Biol., 11, 2016
8GHC
DownloadVisualize
BU of 8ghc by Molmil
The structure of h12-LOX in dimeric form
Descriptor: FE (II) ION, Polyunsaturated fatty acid lipoxygenase ALOX12
Authors:Black, K.A, Mobbs, J.I, Venugopal, H, Thal, D.M, Glukhova, A.
Deposit date:2023-03-09
Release date:2023-08-09
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Cryo-EM structures of human arachidonate 12S-lipoxygenase bound to endogenous and exogenous inhibitors.
Blood, 142, 2023
5BZ6
DownloadVisualize
BU of 5bz6 by Molmil
Crystal structure of the N-terminal domain single mutant (S92A) of the human mitochondrial calcium uniporter fused with T4 lysozyme
Descriptor: Lysozyme,Calcium uniporter protein, mitochondrial, SULFATE ION
Authors:Lee, Y, Min, C.K, Kim, T.G, Song, H.K, Lim, Y, Kim, D, Shin, K, Kang, M, Kang, J.Y, Youn, H.-S, Lee, J.-G, An, J.Y, Park, K.R, Lim, J.J, Kim, J.H, Kim, J.H, Park, Z.Y, Kim, Y.-S, Wang, J, Kim, D.H, Eom, S.H.
Deposit date:2015-06-11
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure and function of the N-terminal domain of the human mitochondrial calcium uniporter.
Embo Rep., 16, 2015

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon