Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3E9I
DownloadVisualize
BU of 3e9i by Molmil
Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with L-Lysine hydroxamate-AMP
Descriptor: 5'-O-{(R)-hydroxy[(L-lysylamino)oxy]phosphoryl}adenosine, Lysyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sakurama, H, Takita, T, Mikami, B, Itoh, T, Yasukawa, K, Inouye, K.
Deposit date:2008-08-22
Release date:2009-07-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Two crystal structures of lysyl-tRNA synthetase from Bacillus stearothermophilus in complex with lysyladenylate-like compounds: insights into the irreversible formation of the enzyme-bound adenylate of L-lysine hydroxamate
J.Biochem., 145, 2009
3RDR
DownloadVisualize
BU of 3rdr by Molmil
Structure of the catalytic domain of XlyA
Descriptor: CHLORIDE ION, N-acetylmuramoyl-L-alanine amidase XlyA, ZINC ION
Authors:Low, L.Y, Liddington, R.C.
Deposit date:2011-04-01
Release date:2011-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Role of net charge on catalytic domain and influence of cell wall binding domain on bactericidal activity, specificity, and host range of phage lysins.
J.Biol.Chem., 286, 2011
3DMJ
DownloadVisualize
BU of 3dmj by Molmil
CRYSTAL STRUCTURE OF HIV-1 V106A and Y181C MUTANT REVERSE TRANSCRIPTASE IN COMPLEX WITH GW564511.
Descriptor: N-{4-[amino(dihydroxy)-lambda~4~-sulfanyl]-2-methylphenyl}-2-(4-chloro-2-{[3-fluoro-5-(trifluoromethyl)phenyl]carbonyl}phenoxy)acetamide, PHOSPHATE ION, Reverse transcriptase/ribonuclease H, ...
Authors:Ren, J, Chamberlain, P.P, Stammers, D.K.
Deposit date:2008-07-01
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the improved drug resistance profile of new generation benzophenone non-nucleoside HIV-1 reverse transcriptase inhibitors.
J.Med.Chem., 51, 2008
3DPL
DownloadVisualize
BU of 3dpl by Molmil
Structural Insights into NEDD8 Activation of Cullin-RING Ligases: Conformational Control of Conjugation.
Descriptor: Cullin-5, RING-box protein 1, ZINC ION
Authors:Duda, D.M, Schulman, B.A.
Deposit date:2008-07-08
Release date:2008-09-30
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into NEDD8 activation of cullin-RING ligases: conformational control of conjugation.
Cell(Cambridge,Mass.), 134, 2008
2XVU
DownloadVisualize
BU of 2xvu by Molmil
Human serum albumin complexed with dansyl-L-asparagine
Descriptor: DANSYL-L-ASPARAGINE, SERUM ALBUMIN
Authors:Zunszain, P.A, Curry, S.
Deposit date:2010-10-28
Release date:2010-11-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis of Binding of Fluorescent, Site-Specific Dansylated Amino Acids to Human Serum Albumin.
J.Struct.Biol., 174, 2011
3RDH
DownloadVisualize
BU of 3rdh by Molmil
X-ray induced covalent inhibition of 14-3-3
Descriptor: 14-3-3 protein zeta/delta, 4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]benzoic acid, NICKEL (II) ION
Authors:Horton, J.R, Upadhyay, A.K, Fu, H, Cheng, X.
Deposit date:2011-04-01
Release date:2011-09-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Discovery and structural characterization of a small molecule 14-3-3 protein-protein interaction inhibitor.
Proc.Natl.Acad.Sci.USA, 108, 2011
3DTO
DownloadVisualize
BU of 3dto by Molmil
Crystal structure of the metal-dependent HD domain-containing hydrolase BH2835 from Bacillus halodurans, Northeast Structural Genomics Consortium Target BhR130.
Descriptor: BH2835 protein
Authors:Forouhar, F, Su, M, Seetharaman, J, Janjua, H, Fang, Y, Xiao, R, Cunningham, K, Ma, L.-C, Owen, L.A, Wang, D, Tong, S, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-07-15
Release date:2008-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of the metal-dependent HD domain-containing hydrolase BH2835 from Bacillus halodurans, Northeast Structural Genomics Consortium Target BhR130.
To be Published
2XPJ
DownloadVisualize
BU of 2xpj by Molmil
Crystal structure of Physalis Mottle Virus with intact ordered RNA
Descriptor: 5'-R(CP*CP*CP)-3', COAT PROTEIN
Authors:Sagurthi, S.R, Rajaram, V, Savithri, H.S, Murthy, M.R.N.
Deposit date:2010-08-26
Release date:2010-09-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal Structure of Natural Bottom Component of Phmv
To be Published
3DYU
DownloadVisualize
BU of 3dyu by Molmil
Crystal structure of Snx9PX-BAR (230-595), H32
Descriptor: Sorting nexin-9
Authors:Wang, Q, Kaan, H.Y.K, Sondermann, H.
Deposit date:2008-07-28
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Structure and plasticity of endophilin and sorting nexin 9.
Structure, 16, 2008
3RP2
DownloadVisualize
BU of 3rp2 by Molmil
THE STRUCTURE OF RAT MAST CELL PROTEASE II AT 1.9-ANGSTROMS RESOLUTION
Descriptor: RAT MAST CELL PROTEASE II
Authors:Reynolds, R, Remington, S, Weaver, L, Fischer, R, Anderson, W, Ammon, H, Matthews, B.
Deposit date:1984-09-10
Release date:1984-10-29
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of rat mast cell protease II at 1.9-A resolution.
Biochemistry, 27, 1988
3DMY
DownloadVisualize
BU of 3dmy by Molmil
Crystal Structure of a predicated acyl-CoA synthetase from E.coli
Descriptor: Protein fdrA
Authors:Sugadev, R, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-07-01
Release date:2008-08-05
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structure of a predicted Acyl-CoA-synthetase from E.coli
To be Published
2XWU
DownloadVisualize
BU of 2xwu by Molmil
CRYSTAL STRUCTURE OF IMPORTIN 13 - UBC9 COMPLEX
Descriptor: IMPORTIN13, SUMO-CONJUGATING ENZYME UBC9
Authors:Gruenwald, M, Bono, F.
Deposit date:2010-11-05
Release date:2010-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of Importin13-Ubc9 Complex: Nuclear Import and Release of a Key Regulator of Sumoylation.
Embo J., 30, 2011
3DNM
DownloadVisualize
BU of 3dnm by Molmil
Crystal Structure Hormone-Sensitive Lipase from a Metagenome Library
Descriptor: BETA-MERCAPTOETHANOL, Esterase/lipase, SULFATE ION
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2008-07-02
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and functional analysis of a novel hormone-sensitive lipase from a metagenome library
Proteins, 74, 2008
3DM2
DownloadVisualize
BU of 3dm2 by Molmil
Crystal structure of HIV-1 K103N mutant reverse transcriptase in complex with GW564511.
Descriptor: N-{4-[amino(dihydroxy)-lambda~4~-sulfanyl]-2-methylphenyl}-2-(4-chloro-2-{[3-fluoro-5-(trifluoromethyl)phenyl]carbonyl}phenoxy)acetamide, PHOSPHATE ION, Reverse transcriptase/ribonuclease H, ...
Authors:Ren, J, Chamberlain, P.P, Stammers, D.K.
Deposit date:2008-06-30
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for the improved drug resistance profile of new generation benzophenone non-nucleoside HIV-1 reverse transcriptase inhibitors.
J.Med.Chem., 51, 2008
4K1J
DownloadVisualize
BU of 4k1j by Molmil
Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Wu, Y, Gao, F, Qi, J.X, Gao, G.F.
Deposit date:2013-04-05
Release date:2013-06-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding
Sci Rep, 3, 2013
3DVV
DownloadVisualize
BU of 3dvv by Molmil
Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)
Descriptor: CHLORIDE ION, HIV-1 genomic RNA, POTASSIUM ION, ...
Authors:Ennifar, E, Dumas, P, Olieric, V.
Deposit date:2008-07-21
Release date:2008-08-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:A fast strategy for Selenium derivatization and phasing of RNA structures
To be Published
3RG9
DownloadVisualize
BU of 3rg9 by Molmil
Trypanosoma brucei dihydrofolate reductase (TbDHFR) in complex with WR99210
Descriptor: 6,6-DIMETHYL-1-[3-(2,4,5-TRICHLOROPHENOXY)PROPOXY]-1,6-DIHYDRO-1,3,5-TRIAZINE-2,4-DIAMINE, Bifunctional dihydrofolate reductase-thymidylate synthase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Vanichtanankul, J, Yuvaniyama, J, Yuthavong, Y.
Deposit date:2011-04-08
Release date:2011-06-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trypanosomal dihydrofolate reductase reveals natural antifolate resistance
Acs Chem.Biol., 6, 2011
3REV
DownloadVisualize
BU of 3rev by Molmil
Crystal structure of human alloreactive tcr nb20
Descriptor: 1,2-ETHANEDIOL, TCR NB20 ALPHA CHAIN, TCR NB20 BETA CHAIN
Authors:Wood, A, Mohammed, F, Salim, M, Tranter, A, Rickinson, A.B, Moss, P.A.H, Stauss, H.J, Steven, N.M, Willcox, B.E.
Deposit date:2011-04-05
Release date:2012-01-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and energetic evidence for highly peptide-specific tumor antigen targeting via allo-MHC restriction.
Proc.Natl.Acad.Sci.USA, 108, 2011
2W35
DownloadVisualize
BU of 2w35 by Molmil
Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair
Descriptor: 5'-D(*AP*GP*CP*CP*GP*TP)-3', 5'-D(*AP*TP*GP*CP*GP*AP*CP*IP*GP)-3', Endonuclease V, ...
Authors:Dalhus, B, Arvai, A.S, Rosnes, I, Olsen, O.E, Backe, P.H, Alseth, I, Gao, H, Cao, W, Tainer, J.A, Bjoras, M.
Deposit date:2008-11-06
Release date:2009-01-20
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structures of Endonuclease V with DNA Reveal Initiation of Deaminated Adenine Repair.
Nat.Struct.Mol.Biol., 16, 2009
2W26
DownloadVisualize
BU of 2w26 by Molmil
Factor Xa in complex with BAY59-7939
Descriptor: 5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide, ACTIVATED FACTOR XA HEAVY CHAIN, CALCIUM ION
Authors:Roehrig, S, Straub, A, Pohlmann, J, Lampe, T, Pernerstorfer, J, Schlemmer, K, Reinemer, P, Perzborn, E, Schaefer, M.
Deposit date:2008-10-24
Release date:2008-11-11
Last modified:2021-04-28
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Discovery of the Novel Antithrombotic Agent 5-Chloro-N-({(5S)-2-Oxo-3- [4-(3-Oxomorpholin-4-Yl)Phenyl]-1,3-Oxazolidin-5-Yl}Methyl)Thiophene-2- Carboxamide (Bay 59-7939): An Oral, Direct Factor Xa Inhibitor.
J.Med.Chem., 48, 2005
2W2D
DownloadVisualize
BU of 2w2d by Molmil
Crystal Structure of a Catalytically Active, Non-toxic Endopeptidase Derivative of Clostridium botulinum Toxin A
Descriptor: ACETATE ION, BOTULINUM NEUROTOXIN A HEAVY CHAIN, BOTULINUM NEUROTOXIN A LIGHT CHAIN, ...
Authors:Masuyer, G, Thiyagarajan, N, James, P.L, Marks, P.M.H, Chaddock, J.A, Acharya, K.R.
Deposit date:2008-10-29
Release date:2009-03-24
Last modified:2022-05-04
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal Structure of a Catalytically Active, Non-Toxic Endopeptidase Derivative of Clostridium Botulinum Toxin A.
Biochem.Biophys.Res.Commun., 381, 2009
2VYU
DownloadVisualize
BU of 2vyu by Molmil
CRYSTAL STRUCTURE OF CHOLINE BINDING PROTEIN F FROM STREPTOCOCCUS PNEUMONIAE IN THE PRESENCE OF A PEPTIDOGLYCAN ANALOGUE (TETRASACCHARIDE-PENTAPEPTIDE)
Descriptor: CHOLINE BINDING PROTEIN F, CHOLINE ION
Authors:Perez-Dorado, I, Molina, R, Hermoso, J.A, Mobashery, S.
Deposit date:2008-07-28
Release date:2009-02-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structure of Cbpf, a Bifunctional Choline-Binding Protein and Autolysis Regulator from Streptococcus Pneumoniae.
Embo Rep., 10, 2009
3DYF
DownloadVisualize
BU of 3dyf by Molmil
T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-461 and Isopentyl Diphosphate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM, ACETATE ION, ...
Authors:Cao, R, Gao, Y, Robinson, H, Goddard, A, Oldfield, E.
Deposit date:2008-07-27
Release date:2009-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation.
J.Am.Chem.Soc., 131, 2009
2VP3
DownloadVisualize
BU of 2vp3 by Molmil
DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND M7G(5')PPPG
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, S-ADENOSYL-L-HOMOCYSTEINE, VP39
Authors:Hodel, A.E, Gershon, P.D, Quiocho, F.A.
Deposit date:1996-12-16
Release date:1997-09-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Specific protein recognition of an mRNA cap through its alkylated base.
Nat.Struct.Biol., 4, 1997
2VS2
DownloadVisualize
BU of 2vs2 by Molmil
Neutron diffraction structure of endothiapepsin in complex with a gem- diol inhibitor.
Descriptor: ENDOTHIAPEPSIN, N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]-N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]-4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide
Authors:Coates, L, Tuan, H.-F, Tomanicek, S, Kovalevsky, A, Mustyakimov, M, Erskine, P, Cooper, J.
Deposit date:2008-04-17
Release date:2008-05-27
Last modified:2023-11-15
Method:NEUTRON DIFFRACTION (2 Å)
Cite:The Catalytic Mechanism of an Aspartic Proteinase Explored with Neutron and X-Ray Diffraction
J.Am.Chem.Soc., 130, 2008

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon