PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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2WC2	Nmr structure of catabolite activator protein in the unliganded state Descriptor: CATABOLITE GENE ACTIVATOR Authors: Popovych, N, Tzeng, S.R, Kalodimos, C.G. Deposit date: 2009-03-06 Release date: 2009-04-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural Basis for Camp-Mediated Allosteric Control of the Catabolite Activator Protein. Proc.Natl.Acad.Sci.USA, 106, 2009
4ZS8	Crystal structure of ligand-free, full length DasR Descriptor: 1,2-ETHANEDIOL, HTH-type transcriptional repressor DasR Authors: Fillenberg, S.B, Muller, Y.A. Deposit date: 2015-05-13 Release date: 2016-06-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structures of the Global Regulator DasR from Streptomyces coelicolor: Implications for the Allosteric Regulation of GntR/HutC Repressors. Plos One, 11, 2016
3MI7	An Enhanced Repressor of Human Papillomavirus E2 Protein Descriptor: 1,2-ETHANEDIOL, Regulatory protein E2 Authors: Bohm, A, Baleja, J, Bose, K, Meinke, G. Deposit date: 2010-04-09 Release date: 2011-04-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Design and characterization of an enhanced repressor of human papillomavirus E2 protein. Faseb J., 25, 2011
2PI0	Crystal Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-B enhancer Descriptor: Interferon regulatory factor 3, PRDIII-I region of human interferon-B promoter strand 1, PRDIII-I region of human interferon-B promoter strand 2 Authors: Escalante, C.R, Nistal-Villan, E, Leyi, S, Garcia-Sastre, A, Aggarwal, A.K. Deposit date: 2007-04-12 Release date: 2007-10-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.31 Å) Cite: Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-beta enhancer. Mol.Cell, 26, 2007
7ABI	Human pre-Bact-2 spliceosome Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Beta-catenin-like protein 1, ... Authors: Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R. Deposit date: 2020-09-07 Release date: 2021-02-10 Method: ELECTRON MICROSCOPY (8 Å) Cite: Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation. Science, 370, 2020
5XE7	Crystal structure of Mycobacterium tuberculosis extracytoplasmic function sigma factor SigJ Descriptor: ECF RNA polymerase sigma factor SigJ Authors: Goutam, K, Gopal, B. Deposit date: 2017-04-01 Release date: 2017-07-19 Last modified: 2017-10-04 Method: X-RAY DIFFRACTION (2.162 Å) Cite: The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor sigma J modulates promoter recognition Nucleic Acids Res., 45, 2017
4I7H	Structural basis for peroxide sensing and gene regulation by PerR from Streptococcus pyogenes Descriptor: NICKEL (II) ION, ZINC ION, peroxide stress sensing regulator Authors: Kumaraswami, M. Deposit date: 2012-11-30 Release date: 2013-05-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of Peroxide Stress Regulator from Streptococcus pyogenes Provides Functional Insights into the Mechanism of Oxidative Stress Sensing. J.Biol.Chem., 288, 2013
7PD3	Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Chandrasekaran, V, Desai, N, Burton, N.O, Yang, H, Price, J, Miska, E.A, Ramakrishnan, V. Deposit date: 2021-08-04 Release date: 2021-11-17 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Visualizing formation of the active site in the mitochondrial ribosome. Elife, 10, 2021
4G9Y	Crystal Structure of the PcaV transcriptional regulator from Streptomyces coelicolor Descriptor: GLYCEROL, PcaV transcriptional regulator Authors: Brown, B.L, Davis, J.R, Sello, J.K, Page, R. Deposit date: 2012-07-24 Release date: 2013-06-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.051 Å) Cite: Study of PcaV from Streptomyces coelicolor yields new insights into ligand-responsive MarR family transcription factors. Nucleic Acids Res., 41, 2013
2O03	Crystal structure of FurB from M. tuberculosis- a Zinc uptake regulator Descriptor: ZINC ION, probable Zinc uptake regulation protein FurB Authors: Lucarelli, D, Russo, S, Pohl, E. Deposit date: 2006-11-27 Release date: 2007-02-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.699 Å) Cite: Crystal structure and function of the zinc uptake regulator FurB from Mycobacterium tuberculosis. J.Biol.Chem., 282, 2007
4FXI	Crystal structure of the isolated E. coli RelE toxin, P21 form Descriptor: SULFATE ION, mRNA interferase RelE Authors: Brodersen, D.E, Boggild, A, Sofos, N. Deposit date: 2012-07-03 Release date: 2012-08-29 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.8003 Å) Cite: The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity. Structure, 20, 2012
2XDI	Tryptophan repressor with L75F mutation in its apo form (no L- tryptophan bound) Descriptor: TRP OPERON REPRESSOR Authors: Tyler, R, Copie, V. Deposit date: 2010-05-03 Release date: 2010-07-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Three-Dimensional Solution NMR Structure of Apo-L75F-Trpr, a Temperature-Sensitive Mutant of the Tryptophan Repressor Protein. Biochemistry, 41, 2002
6TBM	Structure of SAGA bound to TBP, including Spt8 and DUB Descriptor: Polyubiquitin-B, SAGA-associated factor 11, Spt20, ... Authors: Papai, G, Frechard, A, Kolesnikova, O, Crucifix, C, Schultz, P, Ben-Shem, A. Deposit date: 2019-11-01 Release date: 2020-02-12 Last modified: 2024-09-25 Method: ELECTRON MICROSCOPY (20 Å) Cite: Structure of SAGA and mechanism of TBP deposition on gene promoters. Nature, 577, 2020
4FHT	Crystal Structure of the PcaV transcriptional regulator from Streptomyces coelicolor in complex with its natural ligand Descriptor: 3,4-DIHYDROXYBENZOIC ACID, ACETATE ION, PcaV transcriptional regulator Authors: Brown, B.L, Davis, J.R, Sello, J.K, Page, R. Deposit date: 2012-06-06 Release date: 2013-04-24 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Study of PcaV from Streptomyces coelicolor yields new insights into ligand-responsive MarR family transcription factors. Nucleic Acids Res., 41, 2013
4FXH	Crystal structure of the isolated E. coli RelE toxin, P212121 form Descriptor: SULFATE ION, mRNA interferase RelE Authors: Brodersen, D.E, Boggild, A, Sofos, N. Deposit date: 2012-07-03 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity. Structure, 20, 2012
8TXR	E. coli ExoVII(H238A) Descriptor: Exodeoxyribonuclease 7 large subunit, Exodeoxyribonuclease 7 small subunit Authors: Liu, C, Berger, J.M. Deposit date: 2023-08-24 Release date: 2024-01-31 Last modified: 2024-02-07 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structure of Escherichia coli exonuclease VII. Proc.Natl.Acad.Sci.USA, 121, 2024
4ES4	Crystal structure of YdiV and FlhD complex Descriptor: Flagellar transcriptional regulator FlhD, Putative cyclic di-GMP regulator CdgR Authors: Li, B, Gu, L. Deposit date: 2012-04-22 Release date: 2012-10-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural insight of a concentration-dependent mechanism by which YdiV inhibits Escherichia coli flagellum biogenesis and motility Nucleic Acids Res., 40, 2012
5WH1	Apo form of the C-terminal region of human Transcription Factor IIB Descriptor: SULFATE ION, Transcription initiation factor IIB Authors: Bratkowski, M.A, Liu, X. Deposit date: 2017-07-14 Release date: 2017-11-29 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.39 Å) Cite: Structural dissection of an interaction between transcription initiation and termination factors implicated in promoter-terminator cross-talk. J. Biol. Chem., 293, 2018
4EGZ	Crystal Structure of AraR(DBD) in complex with operator ORR3 Descriptor: 5'-D(*AP*AP*AP*TP*TP*TP*GP*TP*CP*CP*GP*TP*AP*TP*AP*CP*AP*TP*TP*TP*T)-3', 5'-D(*TP*AP*AP*AP*AP*TP*GP*TP*AP*TP*AP*CP*GP*GP*AP*CP*AP*AP*AP*TP*T)-3', ACETATE ION, ... Authors: Jain, D, Nair, D.T. Deposit date: 2012-04-02 Release date: 2013-02-06 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators. Nucleic Acids Res., 41, 2013
4IVN	The Vibrio vulnificus NanR protein complexed with ManNAc-6P Descriptor: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose, Transcriptional regulator Authors: Hwang, J, Kim, M.H. Deposit date: 2013-01-23 Release date: 2013-07-17 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into the regulation of sialic acid catabolism by the Vibrio vulnificus transcriptional repressor NanR Proc.Natl.Acad.Sci.USA, 110, 2013
6VNP	Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*TP*TP*CP*AP*T*(R5M)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*T)-3'), ... Authors: Jung, H, Lee, S. Deposit date: 2020-01-29 Release date: 2021-02-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT To Be Published
4WT8	Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex Descriptor: 23S rRNA (2899-MER), 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Amunts, A, Fiedorczuk, K, Ramakrishnan, V. Deposit date: 2014-10-29 Release date: 2015-01-21 Last modified: 2018-07-18 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Bactobolin A Binds to a Site on the 70S Ribosome Distinct from Previously Seen Antibiotics. J.Mol.Biol., 427, 2015
5YCL	Crystal structure of HigBA complex from Shigella flexneri Descriptor: Antitoxin HigA, mRNA interferase HigB Authors: Youn, W.S, Seok, S.H, Seo, M.D. Deposit date: 2017-09-07 Release date: 2018-09-19 Last modified: 2019-09-04 Method: X-RAY DIFFRACTION (3.101 Å) Cite: Structural changes of antitoxin HigA from Shigella flexneri by binding of its cognate toxin HigB. Int.J.Biol.Macromol., 130, 2019
3WGH	Crystal structure of RSP in complex with beta-NADH Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CACODYLATE ION, Redox-sensing transcriptional repressor rex, ... Authors: Zheng, Y, Ko, T.-P, Guo, R.-T. Deposit date: 2013-08-05 Release date: 2014-08-13 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes. J.Struct.Biol., 188, 2014
5ZZ6	Redox-sensing transcriptional repressor Rex Descriptor: ADENOSINE-5'-DIPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Redox-sensing transcriptional repressor Rex 1 Authors: Park, Y.W, Jang, Y.Y, Joo, H.K, Lee, J.Y. Deposit date: 2018-05-30 Release date: 2018-11-07 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Analysis of Redox-sensing Transcriptional Repressor Rex from Thermotoga maritima Sci Rep, 8, 2018

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