PDB: 47720 resultsInfo pagesStatus searchChemie searchBIRD

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4G7Z	Crystal structure of Thermus thermophilus transcription initiation complex containing 5-BrU at template-strand position +1 Descriptor: 5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*(BRU)P*CP*GP*AP*GP*GP*G)-3', 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3', DNA-directed RNA polymerase subunit alpha, ... Authors: Zhang, Y, Ebright, R.H. Deposit date: 2012-07-20 Release date: 2012-10-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.815 Å) Cite: Structural basis of transcription initiation. Science, 338, 2012
5O31	Mitochondrial complex I in the deactive state Descriptor: Acyl carrier protein, mitochondrial, FE2/S2 (INORGANIC) CLUSTER, ... Authors: Blaza, J.N, Vinothkumar, K.R, Hirst, J. Deposit date: 2017-05-23 Release date: 2018-01-17 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (4.13 Å) Cite: Structure of the Deactive State of Mammalian Respiratory Complex I. Structure, 26, 2018
4YU7	Crystal structure of Piratoxin I (PrTX-I) complexed to caffeic acid Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Basic phospholipase A2 homolog piratoxin-1, CAFFEIC ACID, ... Authors: Fernandes, C.A.H, Fontes, M.R.M. Deposit date: 2015-03-18 Release date: 2015-08-05 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.647 Å) Cite: Structural Basis for the Inhibition of a Phospholipase A2-Like Toxin by Caffeic and Aristolochic Acids. Plos One, 10, 2015
5D0T	Yeast 20S proteasome beta5-D166N mutant in complex with MG132 Descriptor: CHLORIDE ION, MAGNESIUM ION, N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]-L-leucinamide, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-08-03 Release date: 2016-03-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A unified mechanism for proteolysis and autocatalytic activation in the 20S proteasome. Nat Commun, 7, 2016
5D23	The crystal structure of STPR from Bombyx mori in complex with 13-bp DNA derived from the +290 site of fibroin gene Descriptor: DNA (26-MER), Fibroin-modulator-binding protein-1 Authors: Cheng, W. Deposit date: 2015-08-05 Release date: 2016-03-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structures of an all-alpha protein running along the DNA major groove. Nucleic Acids Res., 2016
5T6Q	Structure of cytochrome P450 4B1 (CYP4B1) complexed with octane: An n-Alkane and fatty acid omega-hydroxylase with a covalently bound heme Descriptor: Cytochrome P450 4B1, N-OCTANE, PROTOPORPHYRIN IX CONTAINING FE Authors: Hsu, M, Johnson, E.F. Deposit date: 2016-09-01 Release date: 2017-02-15 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.701 Å) Cite: The Crystal Structure of Cytochrome P450 4B1 (CYP4B1) Monooxygenase Complexed with Octane Discloses Several Structural Adaptations for omega-Hydroxylation. J. Biol. Chem., 292, 2017
4YA0	Yeast 20S proteasome beta2-H116E mutant in complex with Ac-PAE-ep Descriptor: Ac-PAE-ep, CHLORIDE ION, MAGNESIUM ION, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-02-17 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors. J.Am.Chem.Soc., 137, 2015
4GH7	Crystal structure of Anticalin N7A in complex with oncofetal fibronectin fragment Fn7B8 Descriptor: Fibronectin, Neutrophil gelatinase-associated lipocalin Authors: Schiefner, A, Gebauer, M, Skerra, A. Deposit date: 2012-08-07 Release date: 2012-12-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Combinatorial design of an Anticalin directed against the extra-domain b for the specific targeting of oncofetal fibronectin J.Mol.Biol., 425, 2013
3BBC	Crystal structure of R88A mutant of the NM23-H2 transcription factor Descriptor: Nucleoside diphosphate kinase B Authors: Weichsel, A, Montfort, W.R. Deposit date: 2007-11-09 Release date: 2008-09-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: NM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1. Mol.Cancer Ther., 8, 2009
5TMF	Re-refinement of thermus thermophilus RNA polymerase Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Wang, J. Deposit date: 2016-10-12 Release date: 2016-11-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3 Å) Cite: On the validation of crystallographic symmetry and the quality of structures. Protein Sci., 24, 2015
4YFK	Escherichia coli RNA polymerase in complex with squaramide compound 8. Descriptor: 3,5-dimethyl-N-{2-[4-(4-methylbenzyl)piperidin-1-yl]-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Molodtsov, V, Fleming, P.R, Eyermann, C.J, Ferguson, A.D, Foulk, M.A, McKinney, D.C, Masse, C.E, Buurman, E.T, Murakami, K.S. Deposit date: 2015-02-25 Release date: 2015-03-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.571 Å) Cite: X-ray Crystal Structures of Escherichia coli RNA Polymerase with Switch Region Binding Inhibitors Enable Rational Design of Squaramides with an Improved Fraction Unbound to Human Plasma Protein. J.Med.Chem., 58, 2015
2XFR	Crystal structure of barley beta-amylase at atomic resolution Descriptor: 1,2-ETHANEDIOL, BETA-AMYLASE Authors: Rejzek, M, Stevenson, C.E.M, Southard, A.M, Stanley, D, Denyer, K, Smith, A.M, Naldrett, M.J, Lawson, D.M, Field, R.A. Deposit date: 2010-05-28 Release date: 2010-12-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (0.97 Å) Cite: Chemical Genetics and Cereal Starch Metabolism: Structural Basis of the Non-Covalent and Covalent Inhibition of Barley Beta-Amylase. Mol.Biosyst., 7, 2011
4DQC	Crystal Structure of (G16C/L38C) HIV-1 Protease in Complex with DRV Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, Aspartyl protease, GLYCEROL, ... Authors: Schiffer, C.A, Mittal, S. Deposit date: 2012-02-15 Release date: 2012-03-07 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Hydrophobic core flexibility modulates enzyme activity in HIV-1 protease. J.Am.Chem.Soc., 134, 2012
5DA5	Crystal structure of Rhodospirillum rubrum Rru_A0973 Descriptor: CALCIUM ION, FE (III) ION, GLYCOLIC ACID, ... Authors: He, D, Vanden Hehier, S, Georgiev, A, Altenbach, K, Tarrant, E, Mackay, C.L, Waldron, K.J, Clarke, D.J, Marles-Wright, J. Deposit date: 2015-08-19 Release date: 2016-08-10 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.064 Å) Cite: Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments. Elife, 5, 2016
4DVQ	Structure of human aldosterone synthase, CYP11B2, in complex with deoxycorticosterone Descriptor: Cytochrome P450 11B2, mitochondrial, DESOXYCORTICOSTERONE, ... Authors: Strushkevich, N, Shen, L, Tempel, W, Arrowsmith, C, Edwards, A, Usanov, S.A, Park, H.-W. Deposit date: 2012-02-23 Release date: 2013-01-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Structural insights into aldosterone synthase substrate specificity and targeted inhibition. Mol.Endocrinol., 27, 2013
5CZ8	Yeast 20S proteasome beta5-L(-49)S-K33A mutant in complex with Carfilzomib Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-07-31 Release date: 2016-03-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.8 Å) Cite: A unified mechanism for proteolysis and autocatalytic activation in the 20S proteasome. Nat Commun, 7, 2016
5D0Z	Yeast 20S proteasome beta5-T1S mutant in complex with Carfilzomib Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ... Authors: Huber, E.M, Groll, M. Deposit date: 2015-08-03 Release date: 2016-03-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A unified mechanism for proteolysis and autocatalytic activation in the 20S proteasome. Nat Commun, 7, 2016
4JT0	Yeast 20S proteasome in complex with the dimerized linear mimetic of TMC-95A - yCP:4a Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Probable proteasome subunit alpha type-7, Proteasome subunit alpha type-1, ... Authors: Desvergne, A, Genin, E, Marechal, X, Gallastegui, N, Dufau, L, Richy, N, Groll, M, Vidal, J, Reboud-Ravaux, M. Deposit date: 2013-03-22 Release date: 2013-05-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Dimerized linear mimics of a natural cyclopeptide (TMC-95A) are potent noncovalent inhibitors of the eukaryotic 20S proteasome. J.Med.Chem., 56, 2013
5DAL	Crystal Structure of human Glutathione Transferase Pi complexed with a metalloid in the presence of Glutathione Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Di-glutathione-PhenylArsine, GLUTATHIONE, ... Authors: Parker, L.J, Parker, M.W, Morton, C.J. Deposit date: 2015-08-20 Release date: 2016-12-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Visualisation of Organoarsenic Human Glutathione Transferase P1-1 Complexes: Metabolism of Arsenic-based Therapeutics To Be Published
2WQJ	Crystal structure of a truncated variant of the human p73 tetramerization domain Descriptor: TUMOR PROTEIN P73 Authors: Joerger, A.C. Deposit date: 2009-08-21 Release date: 2009-10-06 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Evolution of P53, P63, and P73: Implication for Heterotetramer Formation. Proc.Natl.Acad.Sci.USA, 106, 2009
4YT3	CYP106A2 Descriptor: ACETATE ION, Cytochrome P450(MEG), PROTOPORPHYRIN IX CONTAINING FE Authors: janocha, S, carius, y, bernhardt, r, lancaster, c.r.d. Deposit date: 2015-03-17 Release date: 2016-02-24 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of CYP106A2 in Substrate-Free and Substrate-Bound Form. Chembiochem, 17, 2016
4J97	Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Pathogenic Gain-of-Function K659E Mutation Identified in Endometrial Cancer. Descriptor: Fibroblast growth factor receptor 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SULFATE ION Authors: Chen, H, Mohammadi, M. Deposit date: 2013-02-15 Release date: 2013-08-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.5482 Å) Cite: Cracking the Molecular Origin of Intrinsic Tyrosine Kinase Activity through Analysis of Pathogenic Gain-of-Function Mutations. Cell Rep, 4, 2013
5POP	PanDDA analysis group deposition -- Crystal Structure of BRD1 in complex with N10987a Descriptor: 1,2-ETHANEDIOL, 1-[4-(pyridin-4-yl)piperazin-1-yl]ethan-1-one, Bromodomain-containing protein 1, ... Authors: Pearce, N.M, Krojer, T, Talon, R, Bradley, A.R, Fairhead, M, Sethi, R, Wright, N, MacLean, E, Collins, P, Brandao-Neto, J, Douangamath, A, Renjie, Z, Dias, A, Ng, J, Brennan, P.E, Cox, O, Bountra, C, Arrowsmith, C.H, Edwards, A, von Delft, F. Deposit date: 2017-02-07 Release date: 2017-03-15 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.579 Å) Cite: A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density. Nat Commun, 8, 2017
4DWP	SeMet protelomerase tela covalently complexed with substrate DNA Descriptor: DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*GP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*AP*CP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), Protelomerase, ... Authors: Shi, K, Aihara, H. Deposit date: 2012-02-26 Release date: 2013-02-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
4JK2	X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with guanosine pentaphosphate (pppGpp) Descriptor: Escherichia coli RNA polymerase alpha subunit, Escherichia coli RNA polymerase beta subunit, Escherichia coli RNA polymerase beta' subunit, ... Authors: Murakami, K.S. Deposit date: 2013-03-09 Release date: 2013-04-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (4.201 Å) Cite: Differential regulation by ppGpp versus pppGpp in Escherichia coli. Nucleic Acids Res., 41, 2013

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