Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3VXN
DownloadVisualize
BU of 3vxn by Molmil
HLA-A24 in complex with HIV-1 Nef134-10(wt)
Descriptor: 10-mer peptide from Protein Nef, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
4F9D
DownloadVisualize
BU of 4f9d by Molmil
Structure of Escherichia coli PgaB 42-655 in complex with nickel
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETIC ACID, CALCIUM ION, ...
Authors:Little, D.J, Poloczek, J, Whitney, J.C, Robinson, H, Nitz, M, Howell, P.L.
Deposit date:2012-05-18
Release date:2012-07-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Structure and Metal Dependent Activity of Escherichia coli PgaB Provides Insight into the Partial De-N-acetylation of Poly-b-1,6-N-acetyl-D-glucosamine
J.Biol.Chem., 287, 2012
1YRS
DownloadVisualize
BU of 1yrs by Molmil
Crystal structure of KSP in complex with inhibitor 1
Descriptor: 3-[(5S)-1-ACETYL-3-(2-CHLOROPHENYL)-4,5-DIHYDRO-1H-PYRAZOL-5-YL]PHENOL, ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF11, ...
Authors:Cox, C.D, Breslin, M.J, Mariano, B.J, Coleman, P.J, Buser, C.A, Walsh, E.S, Hamilton, K, Kohl, N.E, Torrent, M, Yan, Y, Kuo, L.C, Hartman, G.D.
Deposit date:2005-02-04
Release date:2005-04-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Kinesin spindle protein (KSP) inhibitors. Part 1: The discovery of 3,5-diaryl-4,5-dihydropyrazoles as potent and selective inhibitors of the mitotic kinesin KSP
BIOORG.MED.CHEM.LETT., 15, 2005
1H8H
DownloadVisualize
BU of 1h8h by Molmil
Bovine mitochondrial F1-ATPase crystallised in the presence of 5mm AMPPNP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, BOVINE MITOCHONDRIAL F1-ATPASE, ...
Authors:Braig, K, Menz, R.I, Montgomery, M.G, Leslie, A.G.W, Walker, J.E.
Deposit date:2001-02-06
Release date:2001-04-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Structure and Nucleotide Occupancy of Bovine Mitochondrial F(1)-ATPase are not Influenced by Crystallisation at High Concentrations of Nucleotide
FEBS Lett., 494, 2001
3CZA
DownloadVisualize
BU of 3cza by Molmil
Crystal Structure of E18D DJ-1
Descriptor: MALONIC ACID, Protein DJ-1
Authors:Witt, A.C, Lakshminarasimhan, M, Remington, B.C, Hashim, S, Pozharski, E, Wilson, M.A.
Deposit date:2008-04-28
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Cysteine pKa depression by a protonated glutamic acid in human DJ-1.
Biochemistry, 47, 2008
6A8I
DownloadVisualize
BU of 6a8i by Molmil
Crystal structure of endo-arabinanase ABN-TS D147N mutant in complex with arabinohexaose
Descriptor: CALCIUM ION, alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose-(1-5)-alpha-L-arabinofuranose, endo-alpha-(1->5)-L-arabinanase
Authors:Yamaguchi, A, Tada, T.
Deposit date:2018-07-09
Release date:2018-12-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of endo-1,5-alpha-L-arabinanase mutants from Bacillus thermodenitrificans TS-3 in complex with arabino-oligosaccharides.
Acta Crystallogr F Struct Biol Commun, 74, 2018
2NO2
DownloadVisualize
BU of 2no2 by Molmil
Crystal structure of the DLLRKN-containing coiled-coil domain of Huntingtin-interacting protein 1
Descriptor: Huntingtin-interacting protein 1
Authors:Ybe, J.A, Mishra, S, Helms, S, Nix, J.
Deposit date:2006-10-24
Release date:2007-10-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure at 2.8 A of the DLLRKN-containing coiled-coil domain of huntingtin-interacting protein 1 (HIP1) reveals a surface suitable for clathrin light chain binding
J.Mol.Biol., 367, 2007
1YNO
DownloadVisualize
BU of 1yno by Molmil
High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate
Descriptor: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxylase, CALCIUM ION, ...
Authors:Bera, A.K, Hasson, M.S.
Deposit date:2005-01-24
Release date:2006-01-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate;
To be Published
7JN3
DownloadVisualize
BU of 7jn3 by Molmil
Cryo-EM structure of Rous sarcoma virus cleaved synaptic complex (CSC) with HIV-1 integrase strand transfer inhibitor MK-2048
Descriptor: (6S)-2-(3-chloro-4-fluorobenzyl)-8-ethyl-10-hydroxy-N,6-dimethyl-1,9-dioxo-1,2,6,7,8,9-hexahydropyrazino[1',2':1,5]pyrrolo[2,3-d]pyridazine-4-carboxamide, DNA (5'-D(*AP*AP*TP*GP*TP*TP*GP*TP*CP*TP*TP*AP*TP*GP*CP*AP*AP*T)-3'), DNA (5'-D(*AP*TP*TP*GP*CP*AP*TP*AP*AP*GP*AP*CP*AP*AP*CP*A)-3'), ...
Authors:Pandey, K.K, Bera, S, Shi, K, Aihara, H, Grandgenett, D.P.
Deposit date:2020-08-03
Release date:2021-03-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Cryo-EM structure of the Rous sarcoma virus octameric cleaved synaptic complex intasome.
Commun Biol, 4, 2021
7JS5
DownloadVisualize
BU of 7js5 by Molmil
Phospholipase D engineered mutant (TNYR) inactive enzyme (H168A) bound to 1-inositol phosphate
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D-MYO-INOSITOL-1-PHOSPHATE, GLYCEROL, ...
Authors:Vrielink, A, Samantha, A.
Deposit date:2020-08-13
Release date:2021-04-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation.
Biochem.J., 478, 2021
7JS7
DownloadVisualize
BU of 7js7 by Molmil
Phospholipase D engineered mutant (TNYR) H442 covalent adduct with 1-inositol phosphate
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D-MYO-INOSITOL-1-PHOSPHATE, GLYCEROL, ...
Authors:Vrielink, A, Samantha, A.
Deposit date:2020-08-13
Release date:2021-04-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation.
Biochem.J., 478, 2021
1YTG
DownloadVisualize
BU of 1ytg by Molmil
SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT
Descriptor: HIV PROTEASE, PEPTIDE PRODUCT
Authors:Rose, R.B, Craik, C.S, Douglas, N.L, Stroud, R.M.
Deposit date:1996-08-01
Release date:1997-03-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of HIV-1 and SIV protease product complexes.
Biochemistry, 35, 1996
3VQ9
DownloadVisualize
BU of 3vq9 by Molmil
HIV-1 IN core domain in complex with 6-fluoro-1,3-benzothiazol-2-amine
Descriptor: 6-fluoro-1,3-benzothiazol-2-amine, POL polyprotein
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-20
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
3VQP
DownloadVisualize
BU of 3vqp by Molmil
HIV-1 IN core domain in complex with 2,3-dihydro-1,4-benzodioxin-5-ylmethanol
Descriptor: 2,3-dihydro-1,4-benzodioxin-5-ylmethanol, CADMIUM ION, CHLORIDE ION, ...
Authors:Wielens, J, Chalmers, D.K, Parker, M.W, Scanlon, M.J.
Deposit date:2012-03-29
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
J Biomol Screen, 18, 2013
4OLW
DownloadVisualize
BU of 4olw by Molmil
Crystal structure of antibody VRC07-G54H in complex with clade A/E 93TH057 HIV-1 gp120 core
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen binding fragment of heavy chain: Antibody VRC01, Antigen binding fragment of light chain: Antibody VRC01, ...
Authors:Kwon, Y.D, Kwong, P.D.
Deposit date:2014-01-25
Release date:2014-09-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.709 Å)
Cite:Enhanced Potency of a Broadly Neutralizing HIV-1 Antibody In Vitro Improves Protection against Lentiviral Infection In Vivo.
J.Virol., 88, 2014
6ALB
DownloadVisualize
BU of 6alb by Molmil
CREBBP bromodomain in complex with Cpd 30 (1-(3-(3-(1-methyl-1H-pyrazol-4-yl)isoquinolin-8-yl)-1-(tetrahydro-2H-pyran-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl)ethan-1-one)
Descriptor: 1-{3-[3-(1-methyl-1H-pyrazol-4-yl)isoquinolin-8-yl]-1-(oxan-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl}ethan-1-one, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CREB-binding protein, ...
Authors:Murray, J.M.
Deposit date:2017-08-07
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.053 Å)
Cite:Design and Synthesis of A Biaryl Series As Inhibitors for the Bromodomains of CBP/P300
To be published
3D5V
DownloadVisualize
BU of 3d5v by Molmil
Crystal structure of an activated (Thr->Asp) Polo-like kinase 1 (Plk1) catalytic domain.
Descriptor: Polo-like kinase 1
Authors:Elling, R.A, Fucini, R.V, Romanowski, M.J.
Deposit date:2008-05-17
Release date:2008-08-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of the wild-type and activated catalytic domains of Brachydanio rerio Polo-like kinase 1 (Plk1): changes in the active-site conformation and interactions with ligands.
Acta Crystallogr.,Sect.D, 64, 2008
3VXO
DownloadVisualize
BU of 3vxo by Molmil
HLA-A24 in complex with HIV-1 Nef134-10(2F)
Descriptor: 10-mer peptide from Protein Nef, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
Deposit date:2012-09-20
Release date:2013-10-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3DBS
DownloadVisualize
BU of 3dbs by Molmil
Structure of PI3K gamma in complex with GDC0941
Descriptor: 2-(1H-indazol-4-yl)-6-{[4-(methylsulfonyl)piperazin-1-yl]methyl}-4-morpholin-4-yl-thieno[3,2-d]pyrimidine, Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Authors:Wiesmann, C, Ultsch, M.
Deposit date:2008-06-02
Release date:2008-06-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The identification of 2-(1H-indazol-4-yl)-6-(4-methanesulfonyl-piperazin-1-ylmethyl)-4-morpholin-4-yl-thieno[3,2-d]pyrimidine (GDC-0941) as a potent, selective, orally bioavailable inhibitor of class I PI3 kinase for the treatment of cancer
J.Med.Chem., 51, 2008
6AGF
DownloadVisualize
BU of 6agf by Molmil
Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta1
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Pan, X.J, li, Z.Q, Zhou, Q, Shen, H.Z, Wu, K, Huang, X.S, Chen, J.F, Zhang, J.R, Zhu, X.C, Lei, J.L, Xiong, W, Gong, H.P, Xiao, B.L, Yan, N.
Deposit date:2018-08-11
Release date:2018-10-10
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the human voltage-gated sodium channel Nav1.4 in complex with beta 1.
Science, 362, 2018
4OLX
DownloadVisualize
BU of 4olx by Molmil
Crystal structure of antibody VRC07-G54L in complex with clade A/E 93TH057 HIV-1 gp120 core
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen binding fragment of heavy chain: Antibody VRC01, Antigen binding fragment of light chain: Antibody VRC01, ...
Authors:Kwon, Y.D, Kwong, P.D.
Deposit date:2014-01-25
Release date:2014-09-03
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Enhanced Potency of a Broadly Neutralizing HIV-1 Antibody In Vitro Improves Protection against Lentiviral Infection In Vivo.
J.Virol., 88, 2014
5XZF
DownloadVisualize
BU of 5xzf by Molmil
Vitamin D receptor with a synthetic ligand ADRO1
Descriptor: (1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6S)-6-(1-adamantyl)-6-oxidanyl-hex-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, FORMIC ACID, Mediator of RNA polymerase II transcription subunit 1, ...
Authors:Otero, R, Numoto, N, Ikura, T, Yamada, S, Mourino, A, Makishima, M, Ito, N.
Deposit date:2017-07-12
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:25 S-Adamantyl-23-yne-26,27-dinor-1 alpha ,25-dihydroxyvitamin D3: Synthesis, Tissue Selective Biological Activities, and X-ray Crystal Structural Analysis of Its Vitamin D Receptor Complex.
J. Med. Chem., 61, 2018
4JFM
DownloadVisualize
BU of 4jfm by Molmil
Increasing the Efficiency Efficiency of Ligands for the FK506-Binding Protein 51 by Conformational Control: Complex of FKBP51 with 2-(3,4-dimethoxyphenoxy)ethyl (2S)-1-[(2-oxo-2,3-dihydro-1,3-benzothiazol-6-yl)sulfonyl]piperidine-2-carboxylate
Descriptor: 2-(3,4-dimethoxyphenoxy)ethyl (2S)-1-[(2-oxo-2,3-dihydro-1,3-benzothiazol-6-yl)sulfonyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Wang, Y, Kirschner, A, Fabian, A, Gopalakrishnan, R, Kress, C, Hoogeland, B, Koch, U, Kozany, C, Bracher, A, Hausch, F.
Deposit date:2013-02-28
Release date:2013-08-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Increasing the efficiency of ligands for FK506-binding protein 51 by conformational control.
J.Med.Chem., 56, 2013
7JKX
DownloadVisualize
BU of 7jkx by Molmil
Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with YF3-6
Descriptor: Bromodomain-containing protein 4, N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-[1-methyl-5-(methylamino)-6-oxo-1,6-dihydropyridin-3-yl]-1H-indol-4-yl}ethanesulfonamide
Authors:Ratia, K.M, Xiong, R, Li, Y, Shen, Z, Zhao, J, Huang, F, Dubrovyskyii, O, Thatcher, G.R.
Deposit date:2020-07-29
Release date:2021-06-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with YF3-6
To Be Published
1A1X
DownloadVisualize
BU of 1a1x by Molmil
CRYSTAL STRUCTURE OF MTCP-1 INVOLVED IN T CELL MALIGNANCIES
Descriptor: HMTCP-1
Authors:Fu, Z.Q, Dubois, G.C, Song, S.P, Kulikovskaya, I, Virgilio, L, Rothstein, J, Croce, C.M, Weber, I.T, Harrison, R.W.
Deposit date:1997-12-18
Release date:1998-05-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of MTCP-1: implications for role of TCL-1 and MTCP-1 in T cell malignancies.
Proc.Natl.Acad.Sci.USA, 95, 1998

243531

PDB entries from 2025-10-22

PDB statisticsPDBj update infoContact PDBjnumon