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8EML
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BU of 8eml by Molmil
Crystal Structure of Gsx2 Homeodomain in Complex with DNA
Descriptor: DNA (5'-D(P*GP*AP*GP*CP*TP*AP*AP*TP*TP*AP*AP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*TP*TP*TP*AP*AP*TP*TP*AP*GP*CP*TP*C)-3'), GS homeobox 2, ...
Authors:Webb, J.A, Kovall, R.A.
Deposit date:2022-09-28
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal Structure of Gsx2 Homeodomain in Complex with DNA
To Be Published
5IF1
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BU of 5if1 by Molmil
Crystal structure apo CDK2/cyclin A
Descriptor: Cyclin-A2, Cyclin-dependent kinase 2
Authors:Ayaz, P, Andres, D, Kwiatkowski, D.A, Kolbe, C, Lienau, P, Siemeister, G, Luecking, U, Stegmann, C.M.
Deposit date:2016-02-25
Release date:2016-04-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Conformational Adaption May Explain the Slow Dissociation Kinetics of Roniciclib (BAY 1000394), a Type I CDK Inhibitor with Kinetic Selectivity for CDK2 and CDK9.
Acs Chem.Biol., 11, 2016
8ERN
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BU of 8ern by Molmil
Cyclin-free CDK2 in complex with Cpd21
Descriptor: Cyclin-dependent kinase 2, GLYCEROL, N,3-dimethyl-4-({7-[(2S)-2-methylpyrrolidine-1-carbonyl]quinazolin-2-yl}amino)benzene-1-sulfonamide
Authors:Murray, J.M, Oh, A.
Deposit date:2022-10-12
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Cyclin-free CDK2 in complex with Cpd21
To Be Published
5IFR
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BU of 5ifr by Molmil
Structure of the stable UBE2D3-UbDha conjugate
Descriptor: GLYCEROL, Polyubiquitin-B, Ubiquitin-conjugating enzyme E2 D3
Authors:Pruneda, J.N, Mulder, M.P.C, Witting, K, Ovaa, H, Komander, D.
Deposit date:2016-02-26
Release date:2016-05-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A cascading activity-based probe sequentially targets E1-E2-E3 ubiquitin enzymes.
Nat.Chem.Biol., 12, 2016
8ERD
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BU of 8erd by Molmil
Cyclin-free CDK2 in complex with Cpd17
Descriptor: (2-{[1-(methanesulfonyl)piperidin-4-yl]amino}quinazolin-7-yl)[(2S)-2-methylpyrrolidin-1-yl]methanone, Cyclin-dependent kinase 2
Authors:Murray, J.M, Oh, A.
Deposit date:2022-10-11
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Cyclin-free CDK2 in complex with Cpd17
To Be Published
6YLU
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BU of 6ylu by Molmil
14-3-3sigma in complex with BLNKpT152 phosphopeptide crystal structure
Descriptor: 14-3-3 protein sigma, BLNKpT152, MAGNESIUM ION
Authors:Soini, L, Leysen, S, Davis, J, Ottmann, C.
Deposit date:2020-04-07
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:14-3-3sigma in complex with BLNKpT152 phosphopeptide crystal structure
J.Struct.Biol., 2020
5ILS
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BU of 5ils by Molmil
Autoinhibited ETV1
Descriptor: ETS translocation variant 1
Authors:Whitby, F.G, Currie, S.L.
Deposit date:2016-03-04
Release date:2017-02-22
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Structured and disordered regions cooperatively mediate DNA-binding autoinhibition of ETS factors ETV1, ETV4 and ETV5.
Nucleic Acids Res., 45, 2017
6YL6
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BU of 6yl6 by Molmil
Cdk2(F80C)
Descriptor: Cyclin-dependent kinase 2
Authors:Craven, G, Morgan, R.M.L, Mann, D.J.
Deposit date:2020-04-06
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Multiparameter Kinetic Analysis for Covalent Fragment Optimization by Using Quantitative Irreversible Tethering (qIT).
Chembiochem, 21, 2020
6Y1D
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BU of 6y1d by Molmil
Binary complex of 14-3-3 sigma (C38N) with the Estrogen Related Receptor gamma (DBD) phosphopeptide
Descriptor: 14-3-3 protein sigma, CHLORIDE ION, Estrogen related receptor gamma phosphopeptide, ...
Authors:Somsen, B.A, Ottmann, C.
Deposit date:2020-02-12
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Fluorescence Anisotropy-Based Tethering for Discovery of Protein-Protein Interaction Stabilizers.
Acs Chem.Biol., 15, 2020
6Y3M
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BU of 6y3m by Molmil
14-3-3 Sigma in complex with phosphorylated ATPase peptide
Descriptor: 14-3-3 protein sigma, ATPase peptide, CALCIUM ION, ...
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-02-18
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A new soaking procedure for X-ray crystallographic structural determination of protein-peptide complexes.
Acta Crystallogr.,Sect.F, 76, 2020
5IEV
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BU of 5iev by Molmil
Crystal structure of BAY 1000394 (Roniciclib) bound to CDK2
Descriptor: Cyclin-dependent kinase 2, Roniciclib
Authors:Ayaz, P, Andres, D, Kwiatkowski, D.A, Kolbe, C, Lienau, P, Siemeister, G, Luecking, U, Stegmann, C.M.
Deposit date:2016-02-25
Release date:2016-04-27
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Conformational Adaption May Explain the Slow Dissociation Kinetics of Roniciclib (BAY 1000394), a Type I CDK Inhibitor with Kinetic Selectivity for CDK2 and CDK9.
Acs Chem.Biol., 11, 2016
6Y8E
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BU of 6y8e by Molmil
14-3-3 Sigma in complex with phosphorylated MLF1 peptide
Descriptor: 14-3-3 protein sigma, ARG-SER-PHE-SEP-GLU-PRO-PHE-GLY, CALCIUM ION, ...
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-03-04
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:A new soaking procedure for X-ray crystallographic structural determination of protein-peptide complexes.
Acta Crystallogr.,Sect.F, 76, 2020
8F7L
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BU of 8f7l by Molmil
Human NAMPT in complex with substrate NAM and small molecule activator ZN-29-S
Descriptor: (3S)-N-[(1-benzothiophen-5-yl)methyl]-1-[(2P)-2-(3-fluoro-4-methylphenyl)-2H-pyrazolo[3,4-d]pyrimidin-4-yl]piperidine-3-carboxamide, CHLORIDE ION, NICOTINAMIDE, ...
Authors:Ratia, K, Xiong, R, Shen, Z, Thatcher, G.R.
Deposit date:2022-11-18
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Human NAMPT in complex with substrate NAM and small molecule activator ZN-29-S
To Be Published
6YOY
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BU of 6yoy by Molmil
14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-025
Descriptor: 14-3-3 protein sigma, 5-methyl-2-nitrophenol, CHLORIDE ION, ...
Authors:Wolter, M, Ottmann, C.
Deposit date:2020-04-15
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fragment-Based Stabilizers of Protein-Protein Interactions through Imine-Based Tethering.
Angew.Chem.Int.Ed.Engl., 59, 2020
6YP2
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BU of 6yp2 by Molmil
14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-011
Descriptor: 1-(4-methylphenyl)imidazole, 14-3-3 protein sigma, CHLORIDE ION, ...
Authors:Wolter, M, Ottmann, C.
Deposit date:2020-04-15
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fragment-Based Stabilizers of Protein-Protein Interactions through Imine-Based Tethering.
Angew.Chem.Int.Ed.Engl., 59, 2020
5IBK
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BU of 5ibk by Molmil
Skp1-F-box in complex with a ubiquitin variant
Descriptor: F-box/WD repeat-containing protein 7, Polyubiquitin-B, S-phase kinase-associated protein 1,S-phase kinase-associated protein 1
Authors:Orlicky, S, Sicheri, F.
Deposit date:2016-02-22
Release date:2016-03-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1-F-box interface.
Proc.Natl.Acad.Sci.USA, 113, 2016
6Y35
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BU of 6y35 by Molmil
CCAAT-binding complex from Aspergillus fumigatus with cycA DNA
Descriptor: CCAAT-binding factor complex subunit HapC, CCAAT-binding factor complex subunit HapE, CCAAT-binding transcription factor subunit HAPB, ...
Authors:Groll, M, Huber, E.M.
Deposit date:2020-02-17
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of HapE P88L -linked antifungal triazole resistance in Aspergillus fumigatus .
Life Sci Alliance, 3, 2020
6Y58
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BU of 6y58 by Molmil
Binary complex of 14-3-3 sigma (C38N) with the Estrogen Related Receptor gamma (LBD) phosphopeptide
Descriptor: 14-3-3 protein sigma, Estrogen Related Receptor gamma phosphopeptide, MAGNESIUM ION
Authors:Somsen, B.A, Sijbesma, E, Leijten-van de Gevel, I.A, Ottmann, C.
Deposit date:2020-02-25
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Fluorescence Anisotropy-Based Tethering for Discovery of Protein-Protein Interaction Stabilizers.
Acs Chem.Biol., 15, 2020
6YP3
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BU of 6yp3 by Molmil
14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-028
Descriptor: 1-(4-methylphenyl)-1,2,4-triazole, 14-3-3 protein sigma, CHLORIDE ION, ...
Authors:Wolter, M, Ottmann, C.
Deposit date:2020-04-15
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fragment-Based Stabilizers of Protein-Protein Interactions through Imine-Based Tethering.
Angew.Chem.Int.Ed.Engl., 59, 2020
6YP8
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BU of 6yp8 by Molmil
14-3-3 sigma with RelA/p65 binding site pS45 and covalently bound TCF521-033
Descriptor: 14-3-3 protein sigma, 3-imidazol-1-ylbenzaldehyde, CHLORIDE ION, ...
Authors:Wolter, M, Ottmann, C.
Deposit date:2020-04-15
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fragment-Based Stabilizers of Protein-Protein Interactions through Imine-Based Tethering.
Angew.Chem.Int.Ed.Engl., 59, 2020
7YLV
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BU of 7ylv by Molmil
yeast TRiC-plp2-substrate complex at S2 ATP binding state
Descriptor: Phosducin-like protein 2, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
Authors:Han, W.Y.
Deposit date:2022-07-27
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.91 Å)
Cite:Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.
Sci Adv, 9, 2023
7YLU
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BU of 7ylu by Molmil
yeast TRiC-plp2-substrate complex at S1 TRiC-NPP state
Descriptor: Phosducin-like protein 2, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
Authors:Han, W.Y.
Deposit date:2022-07-27
Release date:2023-03-29
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.55 Å)
Cite:Structural basis of plp2-mediated cytoskeletal protein folding by TRiC/CCT.
Sci Adv, 9, 2023
6Y39
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BU of 6y39 by Molmil
HapE-P88L mutant CCAAT-binding complex from Aspergillus nidulans with cycA DNA
Descriptor: CBFD_NFYB_HMF domain-containing protein, CHLORIDE ION, DNA (25 mer), ...
Authors:Groll, M, Huber, E.M.
Deposit date:2020-02-17
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of HapE P88L -linked antifungal triazole resistance in Aspergillus fumigatus .
Life Sci Alliance, 3, 2020
6Y3S
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BU of 6y3s by Molmil
14-3-3 Sigma in complex with phosphorylated (pS210) Gab2 peptide
Descriptor: 14-3-3 protein sigma, Gab2, MAGNESIUM ION
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-02-18
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A new soaking procedure for X-ray crystallographic structural determination of protein-peptide complexes.
Acta Crystallogr.,Sect.F, 76, 2020
4HHY
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BU of 4hhy by Molmil
Crystal structure of PARP catalytic domain in complex with novel inhibitors
Descriptor: (9aR)-1-[(1-{2-fluoro-5-[(4-oxo-3,4-dihydrophthalazin-1-yl)methyl]benzoyl}piperidin-4-yl)carbonyl]-1,2,3,8,9,9a-hexahydro-7H-benzo[de][1,7]naphthyridin-7-one, DI(HYDROXYETHYL)ETHER, Poly [ADP-ribose] polymerase 1, ...
Authors:Liu, Q.F, Chen, T.T, Xu, Y.C.
Deposit date:2012-10-10
Release date:2013-03-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3637 Å)
Cite:Design, Synthesis, and Biological Evaluation of a Series of Benzo[de][1,7]naphthyridin-7(8H)-ones Bearing a Functionalized Longer Chain Appendage as Novel PARP1 Inhibitors.
J.Med.Chem., 56, 2013

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PDB entries from 2024-09-04

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