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2LT3
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BU of 2lt3 by Molmil
Solution NMR structure of the C-terminal domain of CdnL from Myxococcus xanthus
Descriptor: Transcriptional regulator, CarD family
Authors:Mirassou, Y, Garcia-Moreno, D, Padmanabhan, S, Jimenez, M.A.
Deposit date:2012-05-14
Release date:2013-11-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights into RNA Polymerase Recognition and Essential Function of Myxococcus xanthus CdnL.
Plos One, 9, 2014
2LT4
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CdnLNt from Myxoccoccus xanthus
Descriptor: Transcriptional regulator, CarD family
Authors:Jimenez, M.A, Padmanabhan, S, Mirassou, Y.
Deposit date:2012-05-14
Release date:2013-11-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights into RNA Polymerase Recognition and Essential Function of Myxococcus xanthus CdnL.
Plos One, 9, 2014
1SY4
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BU of 1sy4 by Molmil
Refined solution structure of the S. cerevisiae U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS)
Descriptor: U6 Intramolecular Stem-Loop RNA
Authors:Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E.
Deposit date:2004-03-31
Release date:2004-04-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification.
RNA, 9, 2003
1DQF
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BU of 1dqf by Molmil
CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS
Descriptor: CALCIUM ION, RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'), RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3')
Authors:Xiong, Y, Sundaralingam, M.
Deposit date:2000-01-04
Release date:2000-11-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.
RNA, 6, 2000
1E21
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BU of 1e21 by Molmil
Ribonuclease 1 des1-7 Crystal Structure at 1.9A
Descriptor: RIBONUCLEASE 1
Authors:Pous, J, Mallorqui-Fernandez, G, Peracaula, R, Terzyan, S.S, Futami, J, Tada, H, Yamada, H, Seno, M, De Llorens, R, Gomis-Ruth, F.X, Coll, M.
Deposit date:2000-05-15
Release date:2001-05-03
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Three-Dimensional Crystal Structure of Human Rnase 1Dn7 at 1.9A Resolution
Acta Crystallogr.,Sect.D, 57, 2001
217D
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BU of 217d by Molmil
CRYSTAL STRUCTURES OF THE B-FORM DNA-RNA CHIMER (5'-D(*IP*)-R(*CP*)-D(*IP*)-R(*CP*)-D(*IP*CP*IP*C)-3') COMPLEXED WITH DISTAMYCIN
Descriptor: DISTAMYCIN A, DNA/RNA (5'-D(*IP*)-R(*CP*)-D(*IP*)-R(*CP*)-D(*IP*CP*IP*C)-3'), MAGNESIUM ION
Authors:Chen, X, Ramakrishnan, B, Sundaralingam, M.
Deposit date:1995-07-18
Release date:1996-01-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of B-form DNA-RNA chimers complexed with distamycin.
Nat.Struct.Biol., 2, 1995
216D
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CRYSTAL STRUCTURES OF THE B-FORM DNA-RNA CHIMER (5'-D(*IP*)-R(*CP*)-D(*IP*CP*IP*CP*IP*C)-3') COMPLEXED WITH DISTAMYCIN
Descriptor: DISTAMYCIN A, DNA/RNA (5'-D(*IP*)-R(*CP*)-D(*IP*CP*IP*CP*IP*C)-3'), MAGNESIUM ION
Authors:Chen, X, Ramakrishnan, B, Sundaralingam, M.
Deposit date:1995-07-18
Release date:1996-01-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structures of B-form DNA-RNA chimers complexed with distamycin.
Nat.Struct.Biol., 2, 1995
1U7X
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BU of 1u7x by Molmil
crystal structure of a mutant M. jannashii tyrosyl-tRNA synthetase specific for O-methyl-tyrosine
Descriptor: POTASSIUM ION, Tyrosyl-tRNA synthetase
Authors:Zhang, Y, Wang, L, Schultz, P.G, Wilson, I.A.
Deposit date:2004-08-04
Release date:2005-05-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine.
Protein Sci., 14, 2005
2LWJ
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BU of 2lwj by Molmil
NMR solution structure Myxoccoccus xanthus CdnL
Descriptor: Transcriptional regulator, CarD family
Authors:Jimenez, M, Padmanabhan, S, Mirassou, Y.
Deposit date:2012-08-01
Release date:2014-02-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights into RNA Polymerase Recognition and Essential Function of Myxococcus xanthus CdnL.
Plos One, 9, 2014
8IE2
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BU of 8ie2 by Molmil
Crystal structure of Lactiplantibacillus plantarum GlyRS
Descriptor: Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit
Authors:Yamashita, S, Tomita, K.
Deposit date:2023-02-15
Release date:2023-06-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria.
J.Biochem., 174, 2023
2R1S
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BU of 2r1s by Molmil
Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.4 A (Br1)
Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION
Authors:Timsit, Y, Bombard, S.
Deposit date:2007-08-23
Release date:2007-09-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction.
Rna, 13, 2007
2LT1
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BU of 2lt1 by Molmil
Solution NMR structure of the 72-residue N-terminal domain of Myxococcus xanthus CarD
Descriptor: CarD protein
Authors:Jimenez, M.A, Padmanabhan, S.
Deposit date:2012-05-10
Release date:2013-11-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure-Function Dissection of Myxococcus xanthus CarD N-Terminal Domain, a Defining Member of the CarD_CdnL_TRCF Family of RNA Polymerase Interacting Proteins.
Plos One, 10
1RRR
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BU of 1rrr by Molmil
RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES
Descriptor: RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3')
Authors:Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T.
Deposit date:1997-10-21
Release date:1998-04-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes.
Biochemistry, 37, 1998
4D79
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BU of 4d79 by Molmil
Crystal structure of E. coli tRNA N6-threonylcarbamoyladenosine dehydratase, TcdA, in complex with ATP at 1.768 Angstroem resolution
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, POTASSIUM ION, ...
Authors:Lopez-Estepa, M, Arda, A, Savko, M, Round, A, Shepard, W, Bruix, M, Coll, M, Fernandez, F.J, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2014-11-21
Release date:2015-05-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.768 Å)
Cite:The Crystal Structure and Small-Angle X-Ray Analysis of Csdl/Tcda Reveal a New tRNA Binding Motif in the Moeb/E1 Superfamily.
Plos One, 10, 2015
4D7A
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BU of 4d7a by Molmil
Crystal structure of E. coli tRNA N6-threonylcarbamoyladenosine dehydratase, TcdA, in complex with AMP at 1.801 Angstroem resolution
Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, PHOSPHATE ION, ...
Authors:Lopez-Estepa, M, Arda, A, Savko, M, Round, A, Shepard, W, Bruix, M, Coll, M, Fernandez, F.J, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2014-11-21
Release date:2015-05-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:The Crystal Structure and Small-Angle X-Ray Analysis of Csdl/Tcda Reveal a New tRNA Binding Motif in the Moeb/E1 Superfamily.
Plos One, 10, 2015
5THH
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BU of 5thh by Molmil
Crystal structure of a human tyrosyl-tRNA synthetase mutant
Descriptor: TYROSINE, Tyrosine--tRNA ligase, cytoplasmic
Authors:Blocquel, D, Yang, X.L.
Deposit date:2016-09-29
Release date:2017-05-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.959 Å)
Cite:Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
1DK1
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BU of 1dk1 by Molmil
DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX
Descriptor: 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Nikulin, A, Serganov, A, Ennifar, E, Tischenko, S, Nevskaya, N.
Deposit date:1999-12-06
Release date:2000-04-02
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the S15-rRNA complex.
Nat.Struct.Biol., 7, 2000
2O32
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BU of 2o32 by Molmil
Solution structure of U2 snRNA stem I from human, containing modified nucleotides
Descriptor: 5'-R(*(PSU)P*CP*UP*CP*(OMG)P*(OMG)P*CP*CP*(PSU)P*UP*UP*UP*(OMG)P*GP*CP*UP*AP*AP*(OMG)P*A)-3'
Authors:Sashital, D.G, Venditti, V, Angers, C.G, Cornilescu, G, Butcher, S.E.
Deposit date:2006-11-30
Release date:2007-02-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human.
Rna, 13, 2007
6EZD
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BU of 6ezd by Molmil
Pyrrolysyl-tRNA synthetase from Canditatus Methanomethylophilus alvus (MmaPylRS)
Descriptor: Pyrrolysyl-tRNA synthetase
Authors:Pavkov-Keller, T, Schweiger, K, Gruber, K.
Deposit date:2017-11-15
Release date:2018-12-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A new archaeal pyrrolysyl-tRNA synthetase/amber suppressor tRNA pair for orthogonal protein translation
to be published
2R20
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BU of 2r20 by Molmil
Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.3 A (Br2)
Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION
Authors:Timsit, Y, Bombard, S.
Deposit date:2007-08-24
Release date:2007-09-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction.
Rna, 13, 2007
5Z5E
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BU of 5z5e by Molmil
Crystal structure of the Glycyl-tRNA synthetase (GlyRS) in Nanoarchaeum equitans
Descriptor: GLYCEROL, NEQ417, SULFATE ION
Authors:Noguchi, H, Park, S.Y, Tamura, K.
Deposit date:2018-01-18
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation.
Biochem.Biophys.Res.Commun., 511, 2019
6AGT
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BU of 6agt by Molmil
Crystal structure of PfKRS complexed with chromone inhibitor
Descriptor: COBALT (II) ION, FORMIC ACID, LYSINE, ...
Authors:Yogavel, M, Sharma, A, Sharma, A, Baragana, B, Walpole, C.
Deposit date:2018-08-14
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:Lysyl-tRNA synthetase as a drug target in malaria and cryptosporidiosis.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
4J75
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BU of 4j75 by Molmil
Crystal Structure of a parasite tRNA synthetase, product-bound
Descriptor: GLYCEROL, TRYPTOPHANYL-5'AMP, Tryptophanyl-tRNA synthetase
Authors:Koh, C.Y, Kim, J.E, Verlinde, C.L.M.J, Hol, W.G.J.
Deposit date:2013-02-12
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design.
Mol.Biochem.Parasitol., 189, 2013
4J76
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BU of 4j76 by Molmil
Crystal Structure of a parasite tRNA synthetase, ligand-free
Descriptor: GLYCEROL, Tryptophanyl-tRNA synthetase
Authors:Koh, C.Y, Kim, J.E, Verlinde, C.L.M.J, Hol, W.G.J.
Deposit date:2013-02-12
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Crystal structures of Plasmodium falciparum cytosolic tryptophanyl-tRNA synthetase and its potential as a target for structure-guided drug design.
Mol.Biochem.Parasitol., 189, 2013
2D3K
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Structural study on Project ID PH1539 from Pyrococcus horikoshii OT3
Descriptor: Peptidyl-tRNA hydrolase, ZINC ION
Authors:Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-29
Release date:2006-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of peptidyl-tRNA hydrolase 2 from Pyrococcus horikoshii OT3: insight into the functional role of its dimeric state.
Acta Crystallogr.,Sect.D, 64, 2008

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