Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6Y9J
DownloadVisualize
BU of 6y9j by Molmil
Crystal Structure of subtype-switched Epithelial Adhesin 1 to 9 A domain (Epa1-CBL2Epa9) from Candida glabrata in complex with beta-lactose
Descriptor: CALCIUM ION, CHLORIDE ION, Epa1p, ...
Authors:Hoffmann, D, Diderrich, R, Kock, M, Friederichs, S, Reithofer, V, Essen, L.-O, Moesch, H.-U.
Deposit date:2020-03-09
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Functional reprogramming ofCandida glabrataepithelial adhesins: the role of conserved and variable structural motifs in ligand binding.
J.Biol.Chem., 295, 2020
6YQQ
DownloadVisualize
BU of 6yqq by Molmil
ForT-PRPP complex
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, ForT-PRPP complex, ...
Authors:Naismith, J.H, Gao, S.
Deposit date:2020-04-18
Release date:2020-05-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.
Chem.Commun.(Camb.), 56, 2020
8JTO
DownloadVisualize
BU of 8jto by Molmil
Outer membrane porin of Burkholderia pseudomallei (BpsOmp38) in complex with ceftazidime
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Outer membrane porin (Fragment), SODIUM ION
Authors:Bunkum, P, Aunkham, A, Bert van den, B, Robinson, R.C, Suginta, W.
Deposit date:2023-06-22
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure and function of outer membrane protein from Burkholderia pseudomallei (BpsOmp38)
To be published
1O8U
DownloadVisualize
BU of 1o8u by Molmil
The 2 Angstrom Structure of 6-Oxo Camphor Hydrolase: New Structural Diversity in the Crotonase Superfamily
Descriptor: 6-OXO CAMPHOR HYDROLASE, SODIUM ION
Authors:Grogan, G, Whittingham, J.L, Turkenburg, J.P, Verma, C.S, Walsh, M.A.
Deposit date:2002-12-04
Release date:2003-01-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2 a Crystal Structure of 6-Oxo Camphor Hydrolase: New Structural Diversity in the Crotonase Superfamily
J.Biol.Chem., 278, 2003
8JUR
DownloadVisualize
BU of 8jur by Molmil
Crystal structure of Chitoporin from Vibrio harveyi in complex with gentamicin c1a (multiple binding sites)
Descriptor: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Chitoporin, ...
Authors:Sanram, S, Suginta, W, Robinson, R.
Deposit date:2023-06-27
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Crystal structure of Chitoporin from Vibrio harveyi in complex with gentamicin c1a (multiple binding sites)
To Be Published
6P8M
DownloadVisualize
BU of 6p8m by Molmil
Crystal Structure of Antibody P-p3b3 A60C Heavy Chain in Complex with 426c HIV-1 gp120 core G459C
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2019-06-07
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.594 Å)
Cite:Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization.
Cell Rep, 29, 2019
6Y8K
DownloadVisualize
BU of 6y8k by Molmil
Crystal structure of CD137 in complex with the cyclic peptide BCY10916
Descriptor: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Upadhyaya, P, Kublin, J, Dods, R, Kristensson, J, Lahdenranta, J, Kleyman, M, Repash, E, Ma, J, Mudd, G, Van Rietschoten, K, Haines, E, Harrison, H, Beswick, P, Chen, L, McDonnell, K, Battula, S, Hurov, K, Keen, N.
Deposit date:2020-03-05
Release date:2021-02-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.011 Å)
Cite:Anticancer immunity induced by a synthetic tumor-targeted CD137 agonist.
J Immunother Cancer, 9, 2021
8I0B
DownloadVisualize
BU of 8i0b by Molmil
The crystal structure of human glutamate receptor 2 in complex with LT-102
Descriptor: 8-[4-(2-fluorophenyl)phenyl]-3,4-dihydro-1,2$l^{6},3-benzoxathiazine 2,2-dioxide, CHLORIDE ION, Glutamate receptor 2,Isoform Flip of Glutamate receptor 2, ...
Authors:Qi, X.Y, Wu, C.Y.
Deposit date:2023-01-10
Release date:2024-02-07
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure of the human GluA2 LBD in complex with LT-102
To Be Published
1QOP
DownloadVisualize
BU of 1qop by Molmil
CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE COMPLEXED WITH INDOLE PROPANOL PHOSPHATE
Descriptor: INDOLE-3-PROPANOL PHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
Authors:Weyand, M, Schlichting, I.
Deposit date:1999-11-15
Release date:2000-11-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Wild-Type Tryptophan Synthase Complexed with the Natural Substrate Indole-3-Glycerol Phosphate
Biochemistry, 38, 1999
6Y8Y
DownloadVisualize
BU of 6y8y by Molmil
Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5) with bound Glucose-1-Phosphate
Descriptor: 1-O-phosphono-alpha-D-glucopyranose, ACETATE ION, CALCIUM ION, ...
Authors:Gustafsson, R, Eckhard, U, Selmer, M.
Deposit date:2020-03-06
Release date:2020-12-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and Characterization of Phosphoglucomutase 5 from Atlantic and Baltic Herring-An Inactive Enzyme with Intact Substrate Binding.
Biomolecules, 10, 2020
8IG1
DownloadVisualize
BU of 8ig1 by Molmil
Crystal structure of wild-type transthyretin in complex with rafoxanide
Descriptor: SODIUM ION, Transthyretin, ~{N}-[3-chloranyl-4-(4-chloranylphenoxy)phenyl]-3,5-bis(iodanyl)-2-oxidanyl-benzamide
Authors:Yokoyama, T.
Deposit date:2023-02-20
Release date:2023-08-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:Rafoxanide, a salicylanilide anthelmintic, interacts with human plasma protein transthyretin.
Febs J., 290, 2023
6YI0
DownloadVisualize
BU of 6yi0 by Molmil
Human histidine triad nucleotide-binding protein 2 (hHINT2) refined to 1.65 A in P41212 space group
Descriptor: Histidine triad nucleotide-binding protein 2, mitochondrial, SODIUM ION
Authors:Dolot, R.D, Wlodarczyk, A, Bujacz, G.D, Nawrot, B.C.
Deposit date:2020-03-31
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Biochemical, crystallographic and biophysical characterization of histidine triad nucleotide-binding protein 2 with different ligands including a non-hydrolyzable analog of Ap4A.
Biochim Biophys Acta Gen Subj, 1865, 2021
6YGG
DownloadVisualize
BU of 6ygg by Molmil
NADase from Aspergillus fumigatus complexed with a substrate anologue
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, AfNADase, ...
Authors:Stromland, O, Ziegler, M, Kallio, J.P.
Deposit date:2020-03-27
Release date:2020-12-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Discovery of fungal surface NADases predominantly present in pathogenic species.
Nat Commun, 12, 2021
8KB2
DownloadVisualize
BU of 8kb2 by Molmil
Crystal Structure of M- and C-Domains of the shaft pilin LrpA from Ligilactobacillus ruminis - iodide derivative
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Prajapati, A, Palva, A, von Ossowski, I, Krishnan, V.
Deposit date:2023-08-03
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The crystal structure of the N-terminal domain of the backbone pilin LrpA reveals a new closure-and-twist motion for assembling dynamic pili in Ligilactobacillus ruminis.
Acta Crystallogr D Struct Biol, 80, 2024
6PYD
DownloadVisualize
BU of 6pyd by Molmil
Structure of 3E9 antibody Fab bound to marinobufagenin
Descriptor: (3beta,5beta,14alpha,15beta)-3,5-dihydroxy-14,15-epoxybufa-20,22-dienolide, 3E9 anti-marinobufagenin antibody Fab heavy chain, recloned with human IgG4 C region, ...
Authors:Franklin, M.C, Macdonald, L.E, McWhirter, J, Murphy, A.J.
Deposit date:2019-07-29
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kappa-on-Heavy (KoH) bodies are a distinct class of fully-human antibody-like therapeutic agents with antigen-binding properties.
Proc.Natl.Acad.Sci.USA, 117, 2020
8KG4
DownloadVisualize
BU of 8kg4 by Molmil
Crystal Structure of M- and C-Domains of the shaft pilin LrpA from Ligilactobacillus ruminis - orthorhombic form
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, IODIDE ION, ...
Authors:Prajapati, A, Palva, A, von Ossowski, I, Krishnan, V.
Deposit date:2023-08-17
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The crystal structure of the N-terminal domain of the backbone pilin LrpA reveals a new closure-and-twist motion for assembling dynamic pili in Ligilactobacillus ruminis.
Acta Crystallogr D Struct Biol, 80, 2024
8IUB
DownloadVisualize
BU of 8iub by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltotriose
Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, SULFATE ION, ...
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8J5A
DownloadVisualize
BU of 8j5a by Molmil
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Descriptor: Ferritin heavy chain, SODIUM ION
Authors:Kawakami, K, Maki-Yonekura, S, Hamaguchi, T, Takaba, K, Yonekura, K.
Deposit date:2023-04-21
Release date:2023-07-12
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (1.19 Å)
Cite:Measurement of charges and chemical bonding in a cryo-EM structure.
Commun Chem, 6, 2023
8KFL
DownloadVisualize
BU of 8kfl by Molmil
Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET in 100 mM Na+
Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*G)-3')
Authors:Zhang, Y.P, Lan, W.X, Yin, S.W, Liu, Z.J, Xue, H.J, Cao, C.Y.
Deposit date:2023-08-15
Release date:2024-09-04
Method:SOLUTION NMR
Cite:Stable G-quadruplex Conformation Formed in Promoter Region of Oncogene RET Indicates New Target for Anti-cancer Drug Screening
To Be Published
8J6G
DownloadVisualize
BU of 8j6g by Molmil
Neutron structure of copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pD 9.0
Descriptor: 2-PHENYLETHYLAMINE, COPPER (II) ION, Phenylethylamine oxidase, ...
Authors:Murakawa, T, Okajima, T.
Deposit date:2023-04-25
Release date:2023-09-20
Method:NEUTRON DIFFRACTION (1.09 Å), X-RAY DIFFRACTION
Cite:Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor
Acs Catalysis, 2023
8J0U
DownloadVisualize
BU of 8j0u by Molmil
Crystal structure of horse spleen L-ferritin A115T mutant at -180deg Celsius.
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
Authors:Maity, B, Tian, J, Abe, S, Ueno, T.
Deposit date:2023-04-12
Release date:2023-05-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Atomic-Level Insights into a Unique Semi-Clathrate Hydrate Formed in a Confined Environment of Porous Protein Crystal.
Cryst.Growth Des., 23, 2023
8IUA
DownloadVisualize
BU of 8iua by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltose
Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ...
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8JFS
DownloadVisualize
BU of 8jfs by Molmil
Phosphate bound acylphosphatase from Deinococcus radiodurans at 1 Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, Acylphosphatase, CITRIC ACID, ...
Authors:Khakerwala, Z, Kumar, A, Makde, R.D.
Deposit date:2023-05-18
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1 Å)
Cite:Crystal structure of phosphate bound Acyl phosphatase mini-enzyme from Deinococcus radiodurans at 1 angstrom resolution.
Biochem.Biophys.Res.Commun., 671, 2023
8IU9
DownloadVisualize
BU of 8iu9 by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with glucose
Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose, ...
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8OKM
DownloadVisualize
BU of 8okm by Molmil
Crystal structure of F2F-2020197-00X bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 3C-like proteinase nsp5, ...
Authors:Costanzi, E, Demitri, N, Storici, P.
Deposit date:2023-03-28
Release date:2023-05-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Broad-spectrum coronavirus 3C-like protease peptidomimetic inhibitors effectively block SARS-CoV-2 replication in cells: Design, synthesis, biological evaluation, and X-ray structure determination.
Eur.J.Med.Chem., 253, 2023

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon