Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5RP5
DownloadVisualize
BU of 5rp5 by Molmil
PanDDA analysis group deposition -- Proteinase K crystal structure Apo48
Descriptor: Proteinase K, SULFATE ION
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5RPA
DownloadVisualize
BU of 5rpa by Molmil
PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen E3a
Descriptor: 3-[(4E)-4-imino-5,6-dimethylfuro[2,3-d]pyrimidin-3(4H)-yl]-N,N-dimethylpropan-1-amine, Proteinase K, SULFATE ION
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5RPG
DownloadVisualize
BU of 5rpg by Molmil
PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen H2a
Descriptor: Proteinase K, SULFATE ION, TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5RPJ
DownloadVisualize
BU of 5rpj by Molmil
PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen B12a
Descriptor: 4-oxo-N-[(1S)-1-(pyridin-3-yl)ethyl]-4-(thiophen-2-yl)butanamide, Proteinase K, SULFATE ION
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5RON
DownloadVisualize
BU of 5ron by Molmil
PanDDA analysis group deposition -- Proteinase K changed state model for fragment Frag Xtal Screen E4a
Descriptor: 2-(1H-imidazol-1-yl)-N-(trans-4-methylcyclohexyl)acetamide, Proteinase K, SULFATE ION
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5ROM
DownloadVisualize
BU of 5rom by Molmil
PanDDA analysis group deposition -- Proteinase K crystal structure Apo45
Descriptor: Proteinase K, SULFATE ION
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5ROZ
DownloadVisualize
BU of 5roz by Molmil
PanDDA analysis group deposition -- Proteinase K crystal structure Apo41
Descriptor: Proteinase K, SULFATE ION
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
5RPU
DownloadVisualize
BU of 5rpu by Molmil
PanDDA analysis group deposition -- Proteinase K crystal structure Apo67
Descriptor: Proteinase K, SULFATE ION
Authors:Lima, G.M.A, Talibov, V, Benz, L.S, Jagudin, E, Mueller, U.
Deposit date:2020-09-23
Release date:2021-05-26
Last modified:2021-06-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:FragMAXapp: crystallographic fragment-screening data-analysis and project-management system.
Acta Crystallogr D Struct Biol, 77, 2021
7AGG
DownloadVisualize
BU of 7agg by Molmil
HAd7 knob in complex with 2 EC2-EC3 modules of DSG-2
Descriptor: Desmoglein-2, Fiber
Authors:Effantin, G, Vassal-Stermann, E, Fender, P.
Deposit date:2020-09-22
Release date:2020-10-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Binding Mechanism Elucidation of the Acute Respiratory Disease Causing Agent Adenovirus of Serotype 7 to Desmoglein-2.
Viruses, 12, 2020
7AGF
DownloadVisualize
BU of 7agf by Molmil
HAd7 knob in complex with 3 EC2-EC3 modules of DSG-2
Descriptor: Desmoglein-2, Fiber
Authors:Effantin, G, Vassal-Stermann, E, Fender, P.
Deposit date:2020-09-22
Release date:2020-10-14
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Binding Mechanism Elucidation of the Acute Respiratory Disease Causing Agent Adenovirus of Serotype 7 to Desmoglein-2.
Viruses, 12, 2020
7K7J
DownloadVisualize
BU of 7k7j by Molmil
EphB6 receptor ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ephrin type-B receptor 6
Authors:Goldgur, Y, Himanen, J.
Deposit date:2020-09-22
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Structure of the EphB6 receptor ectodomain.
Plos One, 16, 2021
7AGB
DownloadVisualize
BU of 7agb by Molmil
Protease Sapp1p from Candida parapsilosis in complex with KB70
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, Candidapepsin, ...
Authors:Dostal, J, Heidingsfeld, O, Brynda, J.
Deposit date:2020-09-22
Release date:2021-04-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural determinants for subnanomolar inhibition of the secreted aspartic protease Sapp1p from Candida parapsilosis .
J Enzyme Inhib Med Chem, 36, 2021
7AGE
DownloadVisualize
BU of 7age by Molmil
Protease Sapp1p from Candida parapsilosis in complex with KB32
Descriptor: Candidapepsin, DI(HYDROXYETHYL)ETHER, Pepstatin
Authors:Dostal, J, Heidingsfeld, O, Brynda, J.
Deposit date:2020-09-22
Release date:2021-04-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural determinants for subnanomolar inhibition of the secreted aspartic protease Sapp1p from Candida parapsilosis .
J Enzyme Inhib Med Chem, 36, 2021
7AGD
DownloadVisualize
BU of 7agd by Molmil
Protease Sapp1p from Candida parapsilosis in complex with KB75
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Candidapepsin, DI(HYDROXYETHYL)ETHER, ...
Authors:Dostal, J, Heidingsfeld, O, Brynda, J.
Deposit date:2020-09-22
Release date:2021-04-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural determinants for subnanomolar inhibition of the secreted aspartic protease Sapp1p from Candida parapsilosis .
J Enzyme Inhib Med Chem, 36, 2021
7AGC
DownloadVisualize
BU of 7agc by Molmil
Protease Sapp1p from Candida parapsilosis in complex with KB74
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Candidapepsin, DI(HYDROXYETHYL)ETHER, ...
Authors:Dostal, J, Heidingsfeld, O, Brynda, J.
Deposit date:2020-09-22
Release date:2021-04-21
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural determinants for subnanomolar inhibition of the secreted aspartic protease Sapp1p from Candida parapsilosis .
J Enzyme Inhib Med Chem, 36, 2021
7D43
DownloadVisualize
BU of 7d43 by Molmil
eIF2B-eIF2(aP), aPg complex
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2020-09-22
Release date:2020-12-09
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7AG0
DownloadVisualize
BU of 7ag0 by Molmil
Complex between the bone morphogenetic protein 2 and its antagonist Noggin
Descriptor: Bone morphogenetic protein 2, GLYCEROL, Noggin
Authors:Robert, C, Bruck, F, Herman, R, Vandevenne, M, Filee, P, Kerff, F, Matagne, A.
Deposit date:2020-09-21
Release date:2022-04-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.104 Å)
Cite:Structural analysis of the interaction between human cytokine BMP-2 and the antagonist Noggin reveals molecular details of cell chondrogenesis inhibition.
J.Biol.Chem., 299, 2023
7D3R
DownloadVisualize
BU of 7d3r by Molmil
FOOT AND MOUTH DISEASE VIRUS A/WH/CHA/09-BOUND THE SINGLE CHAIN FRAGME ANTIBODY R50
Descriptor: A/WH/CHA/09 VP1, A/WH/CHA/09 VP2, A/WH/CHA/09 VP3, ...
Authors:He, Y, Lou, Z.
Deposit date:2020-09-20
Release date:2021-04-14
Last modified:2021-05-12
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Structures of Foot-and-mouth Disease Virus with neutralizing antibodies derived from recovered natural host reveal a mechanism for cross-serotype neutralization.
Plos Pathog., 17, 2021
7D3S
DownloadVisualize
BU of 7d3s by Molmil
Human SECR in complex with an engineered Gs heterotrimer
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Fukuhara, S, Kobayashi, K, Kusakizako, T, Shihoya, W, Nureki, O.
Deposit date:2020-09-20
Release date:2020-11-04
Last modified:2020-12-30
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of the human secretin receptor coupled to an engineered heterotrimeric G protein.
Biochem.Biophys.Res.Commun., 533, 2020
7D3E
DownloadVisualize
BU of 7d3e by Molmil
Cryo-EM structure of human DUOX1-DUOXA1 in low-calcium state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dual oxidase 1, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Chen, L, Wu, J.X.
Deposit date:2020-09-19
Release date:2020-12-09
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structures of human dual oxidase 1 complex in low-calcium and high-calcium states.
Nat Commun, 12, 2021
7D3M
DownloadVisualize
BU of 7d3m by Molmil
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY R50
Descriptor: O/TIBET/99 VP1, O/TIBET/99 VP2, O/TIBET/99 VP3, ...
Authors:He, Y, Lou, Z.
Deposit date:2020-09-19
Release date:2021-04-14
Last modified:2021-05-12
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:Structures of Foot-and-mouth Disease Virus with neutralizing antibodies derived from recovered natural host reveal a mechanism for cross-serotype neutralization.
Plos Pathog., 17, 2021
7D3K
DownloadVisualize
BU of 7d3k by Molmil
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY B77
Descriptor: B77 VH, B77 VL, O/TIBET/99 VP1, ...
Authors:He, Y, Lou, Z.
Deposit date:2020-09-19
Release date:2021-04-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structures of Foot-and-mouth Disease Virus with neutralizing antibodies derived from recovered natural host reveal a mechanism for cross-serotype neutralization.
Plos Pathog., 17, 2021
7D3L
DownloadVisualize
BU of 7d3l by Molmil
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY F145
Descriptor: F145 VH, F145 VL, O/TIBET/99 VP1, ...
Authors:He, Y, Lou, Z.
Deposit date:2020-09-19
Release date:2021-04-14
Last modified:2021-05-12
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:Structures of Foot-and-mouth Disease Virus with neutralizing antibodies derived from recovered natural host reveal a mechanism for cross-serotype neutralization.
Plos Pathog., 17, 2021
7D3F
DownloadVisualize
BU of 7d3f by Molmil
Cryo-EM structure of human DUOX1-DUOXA1 in high-calcium state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Dual oxidase 1, ...
Authors:Chen, L, Wu, J.X.
Deposit date:2020-09-19
Release date:2020-12-09
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Structures of human dual oxidase 1 complex in low-calcium and high-calcium states.
Nat Commun, 12, 2021
7D36
DownloadVisualize
BU of 7d36 by Molmil
Crystal Structure of BACE1 in complex with N-{3-[(3S)-1-amino-5-fluoro-3-methyl-3,4-dihydro-2,6-naphthyridin-3-yl]-4-fluorophenyl}-5-cyano-3-methylpyridine-2-carboxamide
Descriptor: Beta-secretase 1, GLYCEROL, IODIDE ION, ...
Authors:Nakahara, K, Mitsuoka, Y, Kasuya, S, Yamamoto, T, Yamamoto, S, Ito, H, Kido, Y, Kusakabe, K.I.
Deposit date:2020-09-18
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Balancing potency and basicity by incorporating fluoropyridine moieties: Discovery of a 1-amino-3,4-dihydro-2,6-naphthyridine BACE1 inhibitor that affords robust and sustained central A beta reduction.
Eur.J.Med.Chem., 216, 2021

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon