PDB: 1230 resultsInfo pagesStatus searchChemie searchBIRD

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8FWJ	Structure of dodecameric KaiC-RS-S413E/S414E complexed with KaiB-RS solved by cryo-EM Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein KaiB, ... Authors: Padua, R.A.P, Grant, T, Pitsawong, W, Hoemberger, M.S, Otten, R, Bradshaw, N, Grigorieff, N, Kern, D. Deposit date: 2023-01-22 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: From primordial clocks to circadian oscillators. Nature, 616, 2023
3IYD	Three-dimensional EM structure of an intact activator-dependent transcription initiation complex Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, DNA (98-MER), ... Authors: Hudson, B.P, Quispe, J, Lara, S, Kim, Y, Berman, H, Arnold, E, Ebright, R.H, Lawson, C.L. Deposit date: 2009-08-01 Release date: 2009-11-10 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (19.799999 Å) Cite: Three-dimensional EM structure of an intact activator-dependent transcription initiation complex Proc.Natl.Acad.Sci.USA, 106, 2009
8B0F	CryoEM structure of C5b8-CD59 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Bubeck, D, Couves, E.C, Gardner, S. Deposit date: 2022-09-07 Release date: 2023-02-22 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis for membrane attack complex inhibition by CD59. Nat Commun, 14, 2023
6PAJ	Structure of the SrrAB Histidine Kinase DHp-CA domain Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Sensor protein SrrB Authors: Lopez Redondo, M.L, Marina Moreno, A. Deposit date: 2019-06-11 Release date: 2020-04-22 Last modified: 2020-06-03 Method: X-RAY DIFFRACTION (2 Å) Cite: The SrrAB two-component system regulatesStaphylococcus aureuspathogenicity through redox sensitive cysteines. Proc.Natl.Acad.Sci.USA, 117, 2020
8G9B	Human IMPDH2 mutant - L245P, treated with GTP, ATP, IMP, and NAD+; compressed filament segment reconstruction Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, INOSINIC ACID, ... Authors: O'Neill, A.G, Kollman, J.M. Deposit date: 2023-02-21 Release date: 2023-04-19 Last modified: 2023-08-09 Method: ELECTRON MICROSCOPY (3 Å) Cite: Neurodevelopmental disorder mutations in the purine biosynthetic enzyme IMPDH2 disrupt its allosteric regulation. J.Biol.Chem., 299, 2023
8V5D	Human mitochondrial DNA polymerase catalytic subunit, PolG, in an APO conformation Descriptor: DNA polymerase subunit gamma-1 Authors: Riccio, A.A, Brannon, A.J, Krahn, J.M, Bouvette, J, Borgnia, J.M, Copeland, W.C. Deposit date: 2023-11-30 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (3 Å) Cite: Coordinated DNA polymerization by Pol gamma and the region of LonP1 regulated proteolysis. Nucleic Acids Res., 2024
8FWI	Structure of dodecameric KaiC-RS-S413E/S414E solved by cryo-EM Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein KaiC, ... Authors: Padua, R.A.P, Grant, T, Pitsawong, W, Hoemberger, M.S, Otten, R, Bradshaw, N, Grigorieff, N, Kern, D. Deposit date: 2023-01-22 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: From primordial clocks to circadian oscillators. Nature, 616, 2023
8V54	Engaged conformation of the human mitochondrial DNA polymerase gamma bound to DNA Descriptor: DNA (25-MER), DNA (44-MER), DNA polymerase subunit gamma-1, ... Authors: Riccio, A.A, Krahn, J.M, Bouvette, J, Borgnia, J.M, Copeland, W.C. Deposit date: 2023-11-30 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Coordinated DNA polymerization by Pol gamma and the region of LonP1 regulated proteolysis. Nucleic Acids Res., 2024
8V55	Human mitochondrial DNA polymerase gamma bound to a replication fork in an open conformation Descriptor: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... Authors: Riccio, A.A, Krahn, J.M, Bouvette, J, Borgnia, M.J, Copeland, W.C. Deposit date: 2023-11-30 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Coordinated DNA polymerization by Pol gamma and the region of LonP1 regulated proteolysis. Nucleic Acids Res., 2024
8V5R	Active conformation of DNA polymerase gamma bound to DNA Descriptor: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, ... Authors: Riccio, A.A, Krahn, J.M, Bouvette, J, Borgnia, J.M, Copeland, W.C. Deposit date: 2023-11-30 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (3 Å) Cite: Coordinated DNA polymerization by Pol gamma and the region of LonP1 regulated proteolysis. Nucleic Acids Res., 2024
8FTH	Chaetomium thermophilum SETX - NPPC internal deletion Descriptor: 5'-3' RNA helicase-like protein, ADENOSINE-5'-DIPHOSPHATE Authors: Williams, R.S, Appel, C.D. Deposit date: 2023-01-12 Release date: 2023-10-25 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Mol.Cell, 83, 2023
8FTK	Chaetomium thermophilum SETX (Full-length) Descriptor: 5'-3' RNA helicase-like protein Authors: Williams, R.S, Appel, C.D. Deposit date: 2023-01-12 Release date: 2023-10-25 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (4.56 Å) Cite: Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Mol.Cell, 83, 2023
8FTM	Setx-ssRNA-ADP-SO4 complex Descriptor: 5'-3' RNA helicase-like protein, ADENOSINE-5'-DIPHOSPHATE, RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), ... Authors: Williams, R.S, Appel, C.D. Deposit date: 2023-01-12 Release date: 2023-10-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Mol.Cell, 83, 2023
3I9W	Crystal structure of the E. coli histidine kinase sensor TorS sensor domain Descriptor: Sensor protein torS Authors: Moore, J.O, Hendrickson, W.A. Deposit date: 2009-07-13 Release date: 2009-10-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural analysis of sensor domains from the TMAO-responsive histidine kinase receptor TorS Structure, 17, 2009
5B70	OxyR2 E204G regulatory domain from Vibrio vulnificus Descriptor: GLYCEROL, LysR family transcriptional regulator Authors: Jo, I, Ha, N.-C. Deposit date: 2016-06-02 Release date: 2017-03-15 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The hydrogen peroxide hypersensitivity of OxyR2 in Vibrio vulnificus depends on conformational constraints J. Biol. Chem., 292, 2017
3I9Y	Crystal structure of the V. parahaemolyticus histidine kinase sensor TorS sensor domain Descriptor: Sensor protein Authors: Moore, J.O, Hendrickson, W.A. Deposit date: 2009-07-13 Release date: 2009-10-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Structural analysis of sensor domains from the TMAO-responsive histidine kinase receptor TorS Structure, 17, 2009
5TBZ	E. Coli RNA Polymerase complexed with NusG Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Liu, B, Steitz, T.A. Deposit date: 2016-09-13 Release date: 2016-12-07 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (7 Å) Cite: Structural insights into NusG regulating transcription elongation. Nucleic Acids Res., 45, 2017
6BCD	Crystal structure of Rev7-K44A/R124A/A135D in complex with Rev3-RBM2 (residues 1988-2014) Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B Authors: Rizzo, A.A, Hao, B, Li, Y, Korzhnev, D.M. Deposit date: 2017-10-20 Release date: 2018-08-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8IGR	Cryo-EM structure of CII-dependent transcription activation complex Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhao, M, Gao, B, Wen, A, Feng, Y, Lu, Y. Deposit date: 2023-02-21 Release date: 2023-05-17 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of lambda CII-dependent transcription activation. Structure, 31, 2023
6BC8	Crystal structure of Rev7-R124A/Rev3-RBM2 (residues 1988-2014) complex Descriptor: ACETATE ION, DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B, ... Authors: Rizzo, A.A, Hao, B, Li, Y, Korzhnev, D.M. Deposit date: 2017-10-20 Release date: 2018-08-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7QQY	yeast Gid10 bound to Art2 Pro/N-degron Descriptor: CHLORIDE ION, ECM21, Uncharacterized protein YGR066C Authors: Chrustowicz, J, Sherpa, D, Schulman, B.A. Deposit date: 2022-01-10 Release date: 2022-03-09 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.26 Å) Cite: A GID E3 ligase assembly ubiquitinates an Rsp5 E3 adaptor and regulates plasma membrane transporters. Embo Rep., 23, 2022
6XZ5	RovC - regulator of virulence interconnected with the Csr system Descriptor: SULFATE ION, Uncharacterized protein,RovC,Uncharacterized protein Authors: Sadana, P, Scrima, A. Deposit date: 2020-02-02 Release date: 2020-09-16 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.3 Å) Cite: RovC - a novel type of hexameric transcriptional activator promoting type VI secretion gene expression. Plos Pathog., 16, 2020
5B7D	OxyR2 E204G mutant regulatory domain from Vibrio vulnificus (sulfate-bound) Descriptor: LysR family transcriptional regulator, SULFATE ION Authors: Jo, I, Ha, N.-C. Deposit date: 2016-06-07 Release date: 2017-03-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.52 Å) Cite: The hydrogen peroxide hypersensitivity of OxyR2 in Vibrio vulnificus depends on conformational constraints J. Biol. Chem., 292, 2017
3FVQ	Crystal structure of the nucleotide binding domain FbpC complexed with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Fe(3+) ions import ATP-binding protein fbpC Authors: Newstead, S, Bilton, P, Carpenter, E.P, Campopiano, D, Iwata, S. Deposit date: 2009-01-16 Release date: 2009-08-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Insights into how nucleotide-binding domains power ABC transport. Structure, 17, 2009
6BI7	Crystal structure of Rev7-WT/Rev3 as a monomer under high-salt conditions Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B Authors: Rizzo, A.A, Korzhnev, D.M, Hao, B, Li, Y. Deposit date: 2017-11-01 Release date: 2018-08-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Rev7 dimerization is important for assembly and function of the Rev1/Pol zeta translesion synthesis complex. Proc. Natl. Acad. Sci. U.S.A., 115, 2018

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