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8PKC
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BU of 8pkc by Molmil
Structure of Api m1 in complex with the AM1-4 nanobody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AM1-4 nanobody, Phospholipase A2
Authors:Aagaard, J.B, Gandini, R, Spillner, E, Miehe, M.
Deposit date:2023-06-26
Release date:2024-05-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Nanobody-based IgG formats as blocking antibodies of the major honeybee venom allergen Api m 1
To be published
8PIH
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BU of 8pih by Molmil
Structure of Api m1 in complex with two nanobodies
Descriptor: CHLORIDE ION, Phospholipase A2, nanobdoy AM1-1, ...
Authors:Aagaard, J.B, Gandini, R, Spillner, E, Miehe, M, Andersen, G.R.
Deposit date:2023-06-21
Release date:2024-05-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Nanobody-based IgG formats as blocking antibodies of the major honeybee venom allergen Api m 1
To be published
6YJL
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BU of 6yjl by Molmil
Solution NMR structure of the C-terminal arm of RSV nucleoprotein
Descriptor: Nucleoprotein
Authors:Cardone, C, Eleouet, J.-F, Galloux, M, Sizun, C.
Deposit date:2020-04-03
Release date:2021-04-14
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Solution NMR structure of the C-terminal arm of RSV nucleoprotein
To Be Published
1BJJ
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BU of 1bjj by Molmil
AGKISTRODOTOXIN, A PHOSPHOLIPASE A2-TYPE PRESYNAPTIC NEUROTOXIN FROM AGKISTRODON HALYS PALLAS
Descriptor: AGKISTRODOTOXIN, CALCIUM ION
Authors:Tang, L, Zhou, Y, Lin, Z.
Deposit date:1998-06-25
Release date:1999-07-29
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of agkistrodotoxin in an orthorhombic crystal form with six molecules per asymmetric unit.
Acta Crystallogr.,Sect.D, 55, 1999
4RFP
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BU of 4rfp by Molmil
Crystal structure of a acidic PLA2 from Trimeresurus stejnegeri venom
Descriptor: Acidic phospholipase A2 5, DI(HYDROXYETHYL)ETHER
Authors:Zeng, F, Niu, L, Li, X, Teng, M.
Deposit date:2014-09-26
Release date:2014-10-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a acidic PLA2 from Trimeresurus stejnegeri venom
To be Published
9MOV
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BU of 9mov by Molmil
Cryo-EM structure of factor Va bound to activated protein C
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Coagulation factor Va heavy chain, ...
Authors:Mohammed, B.M, Basore, K, Di Cera, E.
Deposit date:2024-12-27
Release date:2025-05-21
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structure of coagulation factor Va bound to activated protein C.
Blood, 145, 2025
4L6V
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BU of 4l6v by Molmil
Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Mazor, Y, Nataf, D, Toporik, H, Nelson, N.
Deposit date:2013-06-13
Release date:2014-02-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Crystal structures of virus-like photosystem I complexes from the mesophilic cyanobacterium Synechocystis PCC 6803.
Elife, 3, 2014
2V22
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BU of 2v22 by Molmil
REPLACE: A strategy for Iterative Design of Cyclin Binding Groove Inhibitors
Descriptor: CELL DIVISION PROTEIN KINASE 2, CYCLIN-A2, N~2~-{[1-(4-CHLOROPHENYL)-5-METHYL-1H-1,2,4-TRIAZOL-3-YL]CARBONYL}-N~5~-(DIAMINOMETHYLIDENE)-L-ORNITHYL-L-LEUCYL-L-ISOLEUCYL-4-FLUORO-L-PHENYLALANINAMIDE
Authors:Andrews, M.J, Kontopidis, G, McInnes, C, Plater, A, Innes, L, Cowan, A, Jewsbury, P, Fischer, P.M.
Deposit date:2007-05-31
Release date:2008-01-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Replace: A Strategy for Iterative Design of Cyclin- Binding Groove Inhibitors
Chembiochem, 7, 2006
8ROZ
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BU of 8roz by Molmil
Cryo-EM structure of CDK2-cyclin A in complex with CDC25A
Descriptor: Cyclin-A2, Cyclin-dependent kinase 2, M-phase inducer phosphatase 1
Authors:Rowland, R.J, Noble, M.E.M, Endicott, J.A.
Deposit date:2024-01-12
Release date:2024-05-29
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structure of the CDK2-cyclin A-CDC25A complex.
Nat Commun, 15, 2024
1JLT
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BU of 1jlt by Molmil
Vipoxin Complex
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHOLIPASE A2, ...
Authors:Banumathi, S, Rajashankar, K.R, Notzel, C, Aleksiev, B, Singh, T.P, Genov, N, Betzel, C.
Deposit date:2001-07-16
Release date:2001-10-31
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the neurotoxic complex vipoxin at 1.4 A resolution.
Acta Crystallogr.,Sect.D, 57, 2001
3FL7
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BU of 3fl7 by Molmil
Crystal structure of the human ephrin A2 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Ephrin receptor, ...
Authors:Walker, J.R, Yermekbayeva, L, Seitova, A, Butler-Cole, C, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-12-18
Release date:2009-01-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Architecture of Eph receptor clusters.
Proc.Natl.Acad.Sci.USA, 107, 2010
1XTC
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BU of 1xtc by Molmil
CHOLERA TOXIN
Descriptor: CHOLERA TOXIN
Authors:Zhang, R.-G, Westbrook, E.
Deposit date:1996-01-10
Release date:1996-08-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The three-dimensional crystal structure of cholera toxin.
J.Mol.Biol., 251, 1995
7B5R
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BU of 7b5r by Molmil
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27
Descriptor: Cullin-1, Cyclin-A2, Cyclin-dependent kinase 2, ...
Authors:Horn-Ghetko, D, Prabu, J.R, Schulman, B.A.
Deposit date:2020-12-07
Release date:2021-02-10
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Ubiquitin ligation to F-box protein targets by SCF-RBR E3-E3 super-assembly.
Nature, 590, 2021
7B5L
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BU of 7b5l by Molmil
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1
Descriptor: 5-azanylpentan-2-one, Cullin-1, Cyclin-A2, ...
Authors:Horn-Ghetko, D, Prabu, J.R, Schulman, B.A.
Deposit date:2020-12-04
Release date:2021-02-10
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Ubiquitin ligation to F-box protein targets by SCF-RBR E3-E3 super-assembly.
Nature, 590, 2021
6R2L
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BU of 6r2l by Molmil
NYBR1-A2-SLSKILDTV
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-2-microglobulin, ...
Authors:Rizkallah, P.J, Cole, D.K, Sami, M.
Deposit date:2019-03-18
Release date:2020-02-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Specificity of bispecific T cell receptors and antibodies targeting peptide-HLA.
J.Clin.Invest., 130, 2020
6WQK
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BU of 6wqk by Molmil
hnRNPA2 Low complexity domain (LCD) determined by cryoEM
Descriptor: MCherry fluorescent protein,Heterogeneous nuclear ribonucleoproteins A2/B1 chimera
Authors:Lu, J, Cao, Q, Hughes, M.P, Sawaya, M.R, Boyer, D.R, Cascio, D, Eisenberg, D.S.
Deposit date:2020-04-29
Release date:2020-08-26
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:CryoEM structure of the low-complexity domain of hnRNPA2 and its conversion to pathogenic amyloid.
Nat Commun, 11, 2020
1AYP
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BU of 1ayp by Molmil
A PROBE MOLECULE COMPOSED OF SEVENTEEN PERCENT OF TOTAL DIFFRACTING MATTER GIVES CORRECT SOLUTIONS IN MOLECULAR REPLACEMENT
Descriptor: 1-OCTADECYL-2-ACETAMIDO-2-DEOXY-SN-GLYCEROL-3-PHOSPHOETHYLMETHYL SULFIDE, CALCIUM ION, PHOSPHOLIPASE A2
Authors:Oh, B.-H.
Deposit date:1994-07-19
Release date:1995-07-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:A probe molecule composed of seventeen percent of total diffracting matter gives correct solutions in molecular replacement.
Acta Crystallogr.,Sect.D, 51, 1995
6XCP
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BU of 6xcp by Molmil
Immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Hybrid insulin peptide, ...
Authors:Tran, T.M, Faridi, P, Lim, J.J, Ting, T.Y, Onwukwe, G, Bhattacharjee, P, Jones, M.C, Tresoldi, E, Cameron, J.F, La-Gruta, L.N, Purcell, W.A, Mannering, I.S, Rossjohn, J, Reid, H.H.
Deposit date:2020-06-08
Release date:2021-07-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:T cell receptor recognition of hybrid insulin peptides bound to HLA-DQ8.
Nat Commun, 12, 2021
2OSH
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BU of 2osh by Molmil
crystal structure of Natratoxin, a snake sPLA2 that blocks A-type K+ channel
Descriptor: Phospholipase A2 1
Authors:Teng, M.K, Sun, L.
Deposit date:2007-02-06
Release date:2007-03-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Natratoxin, a novel snake secreted phospholipaseA2 neurotoxin from Naja atra venom inhibiting A-type K+ currents.
Proteins, 72, 2008
8FJB
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BU of 8fjb by Molmil
CryoEM structure of HLA-A2 MAGEA4 (286-294) in complex with H2aM31345N Fab
Descriptor: Beta-2-microglobulin, H2aM31345N Fab heavy chain, H2aM31345N Fab light chain, ...
Authors:Saotome, K, Franklin, M.C.
Deposit date:2022-12-19
Release date:2023-12-20
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:CAR T cells based on fully human T cell receptor-mimetic antibodies exhibit potent antitumor activity in vivo.
Sci Transl Med, 17, 2025
8FJA
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BU of 8fja by Molmil
CryoEM structure of HLA-A2 MAGEA4 (230-239) in complex with REGN6972 Fab
Descriptor: Beta-2-microglobulin, MHC class I antigen, Melanoma-associated antigen 4 peptide, ...
Authors:Saotome, K, Franklin, M.C.
Deposit date:2022-12-19
Release date:2023-12-20
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3 Å)
Cite:CAR T cells based on fully human T cell receptor-mimetic antibodies exhibit potent antitumor activity in vivo.
Sci Transl Med, 17, 2025
2Q2J
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BU of 2q2j by Molmil
Crystal structure of PrTX-I, a PLA2 homolog from Bothrops pirajai
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Phospholipase A2 homolog 1, SULFATE ION
Authors:dos Santos, J.I, Fontes, M.R.
Deposit date:2007-05-28
Release date:2008-06-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Comparative structural studies on Lys49-phospholipases A(2) from Bothrops genus reveal their myotoxic site.
J.Struct.Biol., 167, 2009
2OK9
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BU of 2ok9 by Molmil
PrTX-I-BPB
Descriptor: ISOPROPYL ALCOHOL, Phospholipase A2 homolog 1, p-Bromophenacyl bromide
Authors:Marchi-Salvador, D.P, Fernandes, C.A.H, Soares, A.M, Fontes, M.R.
Deposit date:2007-01-16
Release date:2008-09-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Crystal structure of a phospholipase A(2) homolog complexed with p-bromophenacyl bromide reveals important structural changes associated with the inhibition of myotoxic activity.
Biochim.Biophys.Acta, 1794, 2009
1HSB
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BU of 1hsb by Molmil
DIFFERENT LENGTH PEPTIDES BIND TO HLA-AW68 SIMILARLY AT THEIR ENDS BUT BULGE OUT IN THE MIDDLE
Descriptor: ALANINE, ARGININE, BOUND PEPTIDE FRAGMENT, ...
Authors:Guo, H.-C, Strominger, J.L, Wiley, D.C.
Deposit date:1993-03-30
Release date:1993-10-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle.
Nature, 360, 1992
4E4C
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BU of 4e4c by Molmil
Crystal structure of Notexin at 1.8 A resolution
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Phospholipase A2, SULFATE ION
Authors:Ullah, A, Spencer, P, Murakami, M.T, Arni, R.K.
Deposit date:2012-03-12
Release date:2012-03-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High resolution structure of Notexin
To be Published

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