Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MGH
DownloadVisualize
BU of 6mgh by Molmil
X-ray structure of monomeric near-infrared fluorescent protein miRFP670nano
Descriptor: 3-[2-[(~{Z})-[5-[(~{Z})-[(3~{S},4~{R})-3-ethenyl-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Pletnev, S.
Deposit date:2018-09-13
Release date:2018-12-19
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Smallest near-infrared fluorescent protein evolved from cyanobacteriochrome as versatile tag for spectral multiplexing.
Nat Commun, 10, 2019
4DXQ
DownloadVisualize
BU of 4dxq by Molmil
Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA Q38A
Descriptor: LEA Q38A GFP-LIKE PROTEINS
Authors:Kim, H, Wachter, R.M.
Deposit date:2012-02-27
Release date:2013-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Acid-Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion.
Biochemistry, 52, 2013
3URN
DownloadVisualize
BU of 3urn by Molmil
Crystal Structure of PTE mutant H254G/H257W/L303T/K185R/I274N/A80V/S61T with cyclohexyl methylphosphonate inhibitor
Descriptor: COBALT (II) ION, IMIDAZOLE, Parathion hydrolase, ...
Authors:Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M.
Deposit date:2011-11-22
Release date:2012-08-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents.
Biochemistry, 51, 2012
2PSP
DownloadVisualize
BU of 2psp by Molmil
Porcine pancreatic spasmolytic polypeptide
Descriptor: PORCINE PANCREATIC SPASMOLYTIC POLYPEPTIDE
Authors:Petersen, T.N, Henriksen, A, Gajhede, M.
Deposit date:1996-02-01
Release date:1996-07-11
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of porcine pancreatic spasmolytic polypeptide at 1.95 A resolution.
Acta Crystallogr.,Sect.D, 52, 1996
4EMQ
DownloadVisualize
BU of 4emq by Molmil
Crystal structure of a single mutant of Dronpa, the green-on-state PDM1-4
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, Fluorescent protein Dronpa, ...
Authors:Ngan, N.B, Van Hecke, K, Van Meervelt, L.
Deposit date:2012-04-12
Release date:2012-11-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for the influence of a single mutation K145N on the oligomerization and photoswitching rate of Dronpa.
Acta Crystallogr.,Sect.D, 68, 2012
4N0H
DownloadVisualize
BU of 4n0h by Molmil
Crystal structure of S. cerevisiae mitochondrial GatFAB
Descriptor: Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial, Glutamyl-tRNA(Gln) amidotransferase subunit B, ...
Authors:Araiso, Y, Ishitani, R, Nureki, O.
Deposit date:2013-10-02
Release date:2014-04-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases
Nucleic Acids Res., 42, 2014
4W6H
DownloadVisualize
BU of 4w6h by Molmil
Crystal Structure of Full-Length Split GFP Mutant D190C Disulfide Dimer, P 65 Space Group
Descriptor: fluorescent protein D190C
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-20
Release date:2015-02-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
5NHN
DownloadVisualize
BU of 5nhn by Molmil
Super-Folder Green Fluorescent Protein Artificiall dimer linked via 148 position
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Green fluorescent protein, ...
Authors:Worthy, H.L, Rizkallah, P.J.
Deposit date:2017-03-22
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Positive functional synergy of structurally integrated artificial protein dimers assembled by Click chemistry
Commun Chem, 2019
3MNE
DownloadVisualize
BU of 3mne by Molmil
Crystal structure of the agonist form of mouse glucocorticoid receptor stabilized by F608S mutation at 1.96A
Descriptor: DEXAMETHASONE, GLYCEROL, Glucocorticoid receptor, ...
Authors:Schoch, G.A, Seitz, T, Benz, J, Banner, D, Stihle, M, D'Arcy, B, Thoma, R, Sterner, R, Hennig, M, Ruf, A.
Deposit date:2010-04-21
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening.
J.Mol.Biol., 403, 2010
1ZIO
DownloadVisualize
BU of 1zio by Molmil
PHOSPHOTRANSFERASE
Descriptor: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Berry, M.B, Phillips Jr, G.N.
Deposit date:1996-06-07
Release date:1997-07-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+.
Proteins, 32, 1998
2AKY
DownloadVisualize
BU of 2aky by Molmil
HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER
Descriptor: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION
Authors:Abele, U, Schulz, G.E.
Deposit date:1995-07-28
Release date:1995-11-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer.
Protein Sci., 4, 1995
8U21
DownloadVisualize
BU of 8u21 by Molmil
A Highly Stable Variant of Corynactis Californica Green Fluorescent Protein, ccGFP E6
Descriptor: Green Fluorescent Protein Variant E6, ccGFP E6
Authors:Hung, L.-W, Terwilliger, T.C, Waldo, G, Nguyen, H.B.
Deposit date:2023-09-05
Release date:2024-01-31
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Engineering highly stable variants of Corynactis californica green fluorescent proteins.
Protein Sci., 33, 2024
2HR1
DownloadVisualize
BU of 2hr1 by Molmil
Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy
Descriptor: 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', Modification methylase HhaI, ...
Authors:Shieh, F.
Deposit date:2006-07-19
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The Role of Arg165 Towards Base Flipping, Base Stabilization and Catalysis in M.HhaI.
J.Mol.Biol., 362, 2006
6A1T
DownloadVisualize
BU of 6a1t by Molmil
Charcot-Leyden crystal protein/Galectin-10 variant E33A with lactose
Descriptor: Galectin-10, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Su, J.
Deposit date:2018-06-08
Release date:2018-12-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Identification of key amino acid residues determining ligand binding specificity, homodimerization and cellular distribution of human galectin-10
Glycobiology, 29, 2019
8CCS
DownloadVisualize
BU of 8ccs by Molmil
80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G.
Deposit date:2023-01-27
Release date:2023-09-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (1.97 Å)
Cite:mRNA reading frame maintenance during eukaryotic ribosome translocation.
Nature, 625, 2024
3ZU7
DownloadVisualize
BU of 3zu7 by Molmil
Crystal structure of a designed selected Ankyrin Repeat protein in complex with the MAP kinase ERK2
Descriptor: DESIGNED ANKYRIN REPEAT PROTEIN, MITOGEN-ACTIVATED PROTEIN KINASE 1
Authors:Kummer, L, Mittl, P.R, Pluckthun, A.
Deposit date:2011-07-16
Release date:2012-06-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and Functional Analysis of Phosphorylation-Specific Binders of the Kinase Erk from Designed Ankyrin Repeat Protein Libraries.
Proc.Natl.Acad.Sci.USA, 109, 2012
3UF4
DownloadVisualize
BU of 3uf4 by Molmil
Crystal structure of a SH3 and SH2 domains of FYN protein (Proto-concogene Tyrosine-protein kinase Fyn) from Mus musculus at 1.98 A resolution
Descriptor: CHLORIDE ION, GLYCEROL, SODIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)
Deposit date:2011-10-31
Release date:2011-12-07
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of a SH3 and SH2 domains of FYN protein (Proto-concogene Tyrosine-protein kinase Fyn) from Mus musculus at 1.98 A resolution
To be published
2AHA
DownloadVisualize
BU of 2aha by Molmil
Crystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the reduced form, roGFP1-R8.
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Cannon, M.B, Remington, S.J.
Deposit date:2005-07-27
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Re-engineering redox-sensitive green fluorescent protein for improved response rate.
Protein Sci., 15, 2006
4RVR
DownloadVisualize
BU of 4rvr by Molmil
Crystal Structure of the bromodomain of human BAZ2B in complex WITH GSK2801
Descriptor: 1,2-ETHANEDIOL, 1-{1-[2-(methylsulfonyl)phenyl]-7-propoxyindolizin-3-yl}ethanone, Bromodomain adjacent to zinc finger domain protein 2B
Authors:Chaikuad, A, Felletar, I, Chung, C.W, Drewry, D, Chen, P, Filippakopoulos, P, Fedorov, O, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2014-11-27
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B.
J.Med.Chem., 59, 2016
6A1V
DownloadVisualize
BU of 6a1v by Molmil
Charcot-Leyden crystal protein/Galectin-10 variant E33Q
Descriptor: Galectin-10
Authors:Su, J.
Deposit date:2018-06-08
Release date:2018-12-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.984 Å)
Cite:Identification of key amino acid residues determining ligand binding specificity, homodimerization and cellular distribution of human galectin-10
Glycobiology, 29, 2019
2YZE
DownloadVisualize
BU of 2yze by Molmil
Crystal structure of uricase from Arthrobacter globiformis
Descriptor: (dihydroxyboranyloxy-hydroxy-boranyl)oxylithium, Uricase
Authors:Juan, E.C.M, Hossain, M.T, Hoque, M.M, Suzuki, K, Sekiguchi, T, Takenaka, A.
Deposit date:2007-05-05
Release date:2008-05-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Trapping of the uric acid substrate in the crystal structure of urate oxidase from Arthrobacter globiformis
To be Published
6A1X
DownloadVisualize
BU of 6a1x by Molmil
Charcot-Leyden crystal protein/Galectin-10 variant W127A
Descriptor: Galectin-10
Authors:Su, J.
Deposit date:2018-06-08
Release date:2018-12-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Identification of key amino acid residues determining ligand binding specificity, homodimerization and cellular distribution of human galectin-10
Glycobiology, 29, 2019
6OE8
DownloadVisualize
BU of 6oe8 by Molmil
The crystal structure of hyper-thermostable AgUricase mutant K12C/E286C
Descriptor: MALONATE ION, TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ...
Authors:Shi, Y, Wang, T, Zhou, X.E, Liu, Q, Jiang, Y, Xu, H.E.
Deposit date:2019-03-27
Release date:2019-08-21
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structure-based design of a hyperthermostable AgUricase for hyperuricemia and gout therapy.
Acta Pharmacol.Sin., 40, 2019
6RAU
DownloadVisualize
BU of 6rau by Molmil
PostS3_Pmar_lig4_WT
Descriptor: ADENOSINE MONOPHOSPHATE, ATP-dependent DNA ligase, DNA (5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*CP*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3'), ...
Authors:Leiros, H.K.S, Williamson, A.
Deposit date:2019-04-08
Release date:2019-07-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural intermediates of a DNA-ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation.
Nucleic Acids Res., 47, 2019
6WVH
DownloadVisualize
BU of 6wvh by Molmil
Human VKOR with Brodifacoum
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Brodifacoum, Vitamin K epoxide reductase, ...
Authors:Liu, S, Sukumar, N, Li, W.
Deposit date:2020-05-06
Release date:2020-11-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation.
Science, 371, 2021

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon