PDB: 98225 resultsInfo pagesStatus searchChemie searchBIRD

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4LRR	Ternary complex between E. coli thymidylate synthase, dUMP, and F9 Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 2-oxo-2H-naphtho[1,8-bc]furan-6-yl 4-nitrobenzoate, SULFATE ION, ... Authors: Mangani, S, Pozzi, C, Ferrari, S, Costi, M.P. Deposit date: 2013-07-20 Release date: 2013-11-06 Last modified: 2013-12-11 Method: X-RAY DIFFRACTION (2.41 Å) Cite: 2'-Deoxyuridine 5'-Monophosphate Substrate Displacement in Thymidylate Synthase through 6-Hydroxy-2H-naphtho[1,8-bc]furan-2-one Derivatives. J.Med.Chem., 56, 2013
4QWE	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)FTC-DP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QW9	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)FTC-PPNP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWC	Ternary Crystal Structures of a Y-family DNA polymerase DPO4 from Sulfobus Solfataricus in Comples with DNA and L-DCDP Descriptor: 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one, ACETATE ION, CALCIUM ION, ... Authors: Vyas, R, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
6PH6	Ternary complex crystal structure of DNA polymerase Beta with 2nt-gap with dCTP bound downstream Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*G)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2019-06-25 Release date: 2019-12-11 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DNA polymerase beta nucleotide-stabilized template misalignment fidelity depends on local sequence context. J.Biol.Chem., 295, 2020
4QWA	TERNARY CRYSTAL STRUCTURES OF A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS in COMPLEX WITH DNA AND (-)3TC-DP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QW8	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND D-DCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
8UH1	Crystal structure of T. brucei EIF4E6 in complex with EIF4G5 peptide Descriptor: Eukaryotic translation initiation factor 4E type 6, MIF4G domain-containing protein Authors: Guimaraes, B.G, Penteado, R.F. Deposit date: 2023-10-06 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.898 Å) Cite: Structural analysis of the Trypanosoma brucei EIF4E6/EIF4G5 complex reveals details of the interaction between unusual eIF4F subunits. Sci Rep, 14, 2024
6PH5	Binary product complex crystal structure of DNA polymerase Beta with an extra-helical template base Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*GP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2019-06-25 Release date: 2019-12-11 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.602 Å) Cite: DNA polymerase beta nucleotide-stabilized template misalignment fidelity depends on local sequence context. J.Biol.Chem., 295, 2020
1Q0T	Ternary Structure of T4DAM with AdoHcy and DNA Descriptor: 5'-D(*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*T)-3', DNA adenine methylase, IODIDE ION, ... Authors: Yang, Z, Horton, J.R, Zhou, L, Zhang, X.J, Dong, A, Zhang, X, Schlagman, S.L, Kossykh, V, Hattman, S, Cheng, X. Deposit date: 2003-07-17 Release date: 2003-09-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure of the bacteriophage T4 DNA adenine methyltransferase Nat.Struct.Biol., 10, 2003
5DDY	Binary complex of human Polymerase lambda with dCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, MAGNESIUM ION, ... Authors: Liu, M.S, Tsai, M.D. Deposit date: 2015-08-25 Release date: 2016-02-24 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.36 Å) Cite: Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
4ZGQ	Structure of Cdc123 bound to eIF2-gammaDIII domain Descriptor: Cell division cycle protein 123, Eukaryotic translation initiation factor 2 subunit gamma Authors: Panvert, M, Dubiez, E, Arnold, L, Perez, J, Seufert, W, Mechulam, Y, Schmitt, E. Deposit date: 2015-04-23 Release date: 2015-10-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Cdc123, a Cell Cycle Regulator Needed for eIF2 Assembly, Is an ATP-Grasp Protein with Unique Features. Structure, 23, 2015
2G07	X-ray structure of mouse pyrimidine 5'-nucleotidase type 1, phospho-enzyme intermediate analog with Beryllium fluoride Descriptor: Cytosolic 5'-nucleotidase III, MAGNESIUM ION Authors: Bitto, E, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2006-02-11 Release date: 2006-04-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning. J.Biol.Chem., 281, 2006
4ZGN	Structure Cdc123 complexed with the C-terminal domain of eIF2gamma Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cell division cycle protein 123, Eukaryotic translation initiation factor 2 subunit gamma, ... Authors: Panvert, M, Dubiez, E, Arnold, L, Perez, J, Seufert, W, Mechulam, Y, Schmitt, E. Deposit date: 2015-04-23 Release date: 2015-09-30 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Cdc123, a Cell Cycle Regulator Needed for eIF2 Assembly, Is an ATP-Grasp Protein with Unique Features. Structure, 23, 2015
2G06	X-ray structure of mouse pyrimidine 5'-nucleotidase type 1, with bound magnesium(II) Descriptor: Cytosolic 5'-nucleotidase III, MAGNESIUM ION, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) Authors: Bitto, E, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2006-02-11 Release date: 2006-04-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning. J.Biol.Chem., 281, 2006
2G0A	X-ray structure of mouse pyrimidine 5'-nucleotidase type 1 with lead(II) bound in active site Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cytosolic 5'-nucleotidase III, LEAD (II) ION Authors: Bitto, E, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2006-02-11 Release date: 2006-04-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning. J.Biol.Chem., 281, 2006
2G09	X-ray structure of mouse pyrimidine 5'-nucleotidase type 1, product complex Descriptor: Cytosolic 5'-nucleotidase III, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Bitto, E, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2006-02-11 Release date: 2006-04-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning. J.Biol.Chem., 281, 2006
4PTF	Ternary crystal structure of yeast DNA polymerase epsilon with template G Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', ... Authors: Jain, R, Rajashankar, K.R, Buku, A, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K. Deposit date: 2014-03-10 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.809 Å) Cite: Crystal Structure of Yeast DNA Polymerase epsilon Catalytic Domain. Plos One, 9, 2014
2G08	X-ray structure of mouse pyrimidine 5'-nucleotidase type 1, product-transition complex analog with Aluminum fluoride Descriptor: ALUMINUM FLUORIDE, Cytosolic 5'-nucleotidase III, MAGNESIUM ION Authors: Bitto, E, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2006-02-11 Release date: 2006-04-04 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning. J.Biol.Chem., 281, 2006
4QWD	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)3TC-PPNP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
1Q0S	Binary Structure of T4DAM with AdoHcy Descriptor: DNA adenine methylase, S-ADENOSYL-L-HOMOCYSTEINE Authors: Yang, Z, Horton, J.R, Zhou, L, Zhang, X.J, Dong, A, Zhang, X, Schlagman, S.L, Kossykh, V, Hattman, S, Cheng, X. Deposit date: 2003-07-17 Release date: 2003-09-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the bacteriophage T4 DNA adenine methyltransferase Nat.Struct.Biol., 10, 2003
4U0Z	Eukaryotic Fic Domain containing protein with bound APCPP Descriptor: Adenosine monophosphate-protein transferase FICD, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION Authors: Cole, A.R, Bunney, T.D, Katan, M. Deposit date: 2014-07-14 Release date: 2014-12-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions. Structure, 22, 2014
5SY7	Crystal Structure of the Heterodimeric NPAS3-ARNT Complex with HRE DNA Descriptor: Aryl hydrocarbon receptor nuclear translocator, DNA (5'-D(*CP*AP*CP*GP*AP*CP*CP*CP*GP*CP*AP*CP*GP*TP*AP*CP*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*TP*GP*CP*GP*TP*AP*CP*GP*TP*GP*CP*GP*GP*GP*TP*CP*GP*T)-3'), ... Authors: Wu, D, Su, X, Potluri, N, Kim, Y, Rastinejad, F. Deposit date: 2016-08-10 Release date: 2016-11-09 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (4.2 Å) Cite: NPAS1-ARNT and NPAS3-ARNT crystal structures implicate the bHLH-PAS family as multi-ligand binding transcription factors. Elife, 5, 2016
6I9E	Thermophage P23-45 empty expanded capsid Descriptor: Auxiliary protein, Major head protein Authors: Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A. Deposit date: 2018-11-23 Release date: 2019-02-06 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.74 Å) Cite: Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3ARG	Ternary crystal structure of the mouse NKT TCR-CD1d-alpha-glucosylceramide(C20:2) Descriptor: (11E,14E)-N-[(2S,3S,4R)-1-(alpha-D-glucopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Wun, K.S, Rossjohn, J. Deposit date: 2010-11-27 Release date: 2011-03-30 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (3 Å) Cite: A molecular basis for the exquisite CD1d-restricted antigen specificity and functional responses of natural killer T cells Immunity, 34, 2011

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