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7Z0O
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BU of 7z0o by Molmil
Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA
Descriptor: Histone H3, Histone H4, Non-template DNA, ...
Authors:Baudin, F, Murciano, B, Fung, H.K.H, Fromm, S.A, Mueller, C.W.
Deposit date:2022-02-23
Release date:2022-04-27
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Mechanism of RNA polymerase I selection by transcription factor UAF.
Sci Adv, 8, 2022
8XXT
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BU of 8xxt by Molmil
ASFV RNAP M1249L C-tail occupied complex2 (MCOC2)
Descriptor: C122R, C147L, D339L, ...
Authors:Zhu, G.L, Zhu, Y, Zhu, Z.X, Sun, F, Zheng, H.X.
Deposit date:2024-01-19
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural basis of RNA polymerase complexes in African swine fever virus.
Nat Commun, 16, 2025
8XX4
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BU of 8xx4 by Molmil
ASFV RNAP elongation complex
Descriptor: C122R, D339L, DNA (5'-D(P*CP*GP*CP*AP*AP*CP*GP*GP*CP*GP*A)-3'), ...
Authors:Zhu, G.L, Zhu, Y, Zhu, Z.X, Sun, F, Zheng, H.X.
Deposit date:2024-01-17
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural basis of RNA polymerase complexes in African swine fever virus.
Nat Commun, 16, 2025
8Y0E
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BU of 8y0e by Molmil
ASFV RNAP M1249L C-tail occupied complex4 (MCOC4)
Descriptor: C122R, C147L, D339L, ...
Authors:Zhu, G.L, Zhu, Y, Zhu, Z.X, Sun, F, Zheng, H.X.
Deposit date:2024-01-22
Release date:2025-01-29
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of RNA polymerase complexes in African swine fever virus.
Nat Commun, 16, 2025
8XX5
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BU of 8xx5 by Molmil
ASFV RNAP M1249L C-tail occupied complex1 (MCOC1)
Descriptor: C122R, C147L, D339L, ...
Authors:Zhu, G.L, Zhu, Y, Zhu, Z.X, Sun, F, Zheng, H.X.
Deposit date:2024-01-17
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural basis of RNA polymerase complexes in African swine fever virus.
Nat Commun, 16, 2025
8XY6
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BU of 8xy6 by Molmil
ASFV RNAP M1249L C-tail occupied complex3 (MCOC3)
Descriptor: C122R, C147L, D339L, ...
Authors:Zhu, G.L, Zhu, Y, Zhu, Z.X, Sun, F, Zheng, H.X.
Deposit date:2024-01-19
Release date:2025-01-22
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of RNA polymerase complexes in African swine fever virus.
Nat Commun, 16, 2025
8XXP
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BU of 8xxp by Molmil
ASFV RNAP core complex
Descriptor: C122R, C147L, D339L, ...
Authors:Zhu, G.L, Zhu, Y, Zhu, Z.X, Sun, F, Zheng, H.X.
Deposit date:2024-01-18
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural basis of RNA polymerase complexes in African swine fever virus.
Nat Commun, 16, 2025
8FIY
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BU of 8fiy by Molmil
Cryo-EM structure of E. coli RNA polymerase Elongation complex in the Transcription-Translation Complex (RNAP in an anti-swiveled conformation)
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Florez Ariza, A, Wee, L, Tong, A, Canari, C, Grob, P, Nogales, E, Bustamante, C.
Deposit date:2022-12-17
Release date:2023-03-29
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery.
Cell, 186, 2023
8FIX
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BU of 8fix by Molmil
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex harboring a terminal mismatch
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Florez Ariza, A, Wee, L, Tong, A, Canari, C, Grob, P, Nogales, E, Bustamante, C.
Deposit date:2022-12-17
Release date:2023-03-29
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:A trailing ribosome speeds up RNA polymerase at the expense of transcript fidelity via force and allostery.
Cell, 186, 2023
6RI7
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BU of 6ri7 by Molmil
Cryo-EM structure of E. coli RNA polymerase elongation complex bound to GreB transcription factor
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
Deposit date:2019-04-23
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
8DH0
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BU of 8dh0 by Molmil
T7 RNA polymerase elongation complex with unnatural base dDs
Descriptor: GLYCEROL, Non-template strand DNA, RNA, ...
Authors:Oh, J, Wang, D.
Deposit date:2022-06-24
Release date:2023-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase.
Nat Commun, 14, 2023
6RIP
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BU of 6rip by Molmil
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex in swiveled state
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
Deposit date:2019-04-24
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
6RI9
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BU of 6ri9 by Molmil
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex in non-swiveled state
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
Deposit date:2019-04-23
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
6RIN
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BU of 6rin by Molmil
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex bound to GreB transcription factor
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
Deposit date:2019-04-24
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
6RH3
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BU of 6rh3 by Molmil
Cryo-EM structure of E. coli RNA polymerase elongation complex bound to CTP substrate
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
Deposit date:2019-04-18
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
5UAG
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BU of 5uag by Molmil
Escherichia coli RNA polymerase mutant - RpoB D516V
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Molodtsov, V, Scharf, N.T, Stefan, M.A, Garcia, G.A, Murakami, K.S.
Deposit date:2016-12-19
Release date:2017-02-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.399 Å)
Cite:Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis.
Mol. Microbiol., 103, 2017
5UAQ
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BU of 5uaq by Molmil
Escherichia coli RNA polymerase RpoB H526Y mutant
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Molodtsov, V, Scharf, N.T, Stefan, M.A, Garcia, G.A, Murakami, K.S.
Deposit date:2016-12-19
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis.
Mol. Microbiol., 103, 2017
5UAJ
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BU of 5uaj by Molmil
Escherichia coli RNA polymerase RpoB S531L mutant
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Molodtsov, V, Scharf, N.T, Stefan, M.A, Garcia, G.A, Murakami, K.S.
Deposit date:2016-12-19
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.915 Å)
Cite:Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis.
Mol. Microbiol., 103, 2017
8B3G
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BU of 8b3g by Molmil
C(N)RL4CSA-UVSSA-E2-ubiquitin complex.
Descriptor: Cullin-4A, DNA damage-binding protein 1, DNA excision repair protein ERCC-8, ...
Authors:Kokic, G, Cramer, P.
Deposit date:2022-09-16
Release date:2024-09-04
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair.
Nat.Struct.Mol.Biol., 31, 2024
5OHO
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BU of 5oho by Molmil
Crystal structure of the KOWx-KOW4 domain of human DSIF
Descriptor: CHLORIDE ION, GLYCEROL, Transcription elongation factor SPT5
Authors:Bernecky, C, Plitzko, J.M, Cramer, P.
Deposit date:2017-07-17
Release date:2017-09-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp.
Nat. Struct. Mol. Biol., 24, 2017
5VT0
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BU of 5vt0 by Molmil
Escherichia coli 6S RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoenzyme
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Chen, J, Darst, S.A.
Deposit date:2017-05-15
Release date:2017-11-01
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase.
Mol. Cell, 68, 2017
2XI7
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BU of 2xi7 by Molmil
N-terminal endonuclease domain of La Crosse virus L-protein
Descriptor: 2-4-DIOXO-4-PHENYLBUTANOIC ACID, MANGANESE (II) ION, RNA POLYMERASE L
Authors:Reguera, J, Weber, F, Cusack, S.
Deposit date:2010-06-28
Release date:2010-10-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bunyaviridae RNA Polymerases (L-Protein) Have an N-Terminal, Influenza-Like Endonuclease Domain, Essential for Viral CAP-Dependent Transcription.
Plos Pathog., 6, 2010
9EI2
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BU of 9ei2 by Molmil
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to an apo RECQL5 helicase (RECQL5 IRI Module focused-classified)
Descriptor: ATP-dependent DNA helicase Q5, DNA-directed RNA polymerase II subunit RPB1
Authors:Florez Ariza, A, Lue, N, Nogales, E.
Deposit date:2024-11-25
Release date:2025-03-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural insights into transcriptional regulation by the helicase RECQL5.
Biorxiv, 2025
5LVF
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BU of 5lvf by Molmil
Solution structure of Rtt103 CTD-interacting domain bound to a Thr4 phosphorylated CTD peptide
Descriptor: PRO-SER-TYR-SER-PRO-PTH-SER-PRO-SER-TYR-SER-PRO-THR-SER-PRO-SER, Regulator of Ty1 transposition protein 103
Authors:Jasnovidova, O, Kubicek, K, Krejcikova, M, Stefl, R.
Deposit date:2016-09-14
Release date:2017-05-10
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Structural insight into recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by Rtt103p.
EMBO Rep., 18, 2017
2XI5
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BU of 2xi5 by Molmil
N-terminal endonuclease domain of La Crosse virus L-protein
Descriptor: MANGANESE (II) ION, RNA POLYMERASE L
Authors:Reguera, J, Weber, F, Cusack, S.
Deposit date:2010-06-28
Release date:2010-10-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bunyaviridae RNA Polymerases (L-Protein) Have an N-Terminal, Influenza-Like Endonuclease Domain, Essential for Viral CAP-Dependent Transcription.
Plos Pathog., 6, 2010

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PDB entries from 2025-07-09

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