Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5R0K
DownloadVisualize
BU of 5r0k by Molmil
PanDDA analysis group deposition -- Aar2/RNaseH in complex with fragment F2X-Entry G12, DMSO-free
Descriptor: A1 cistron-splicing factor AAR2, Pre-mRNA-splicing factor 8, ~{N}-[(~{E})-thiophen-2-ylmethylideneamino]cyclopropanecarboxamide
Authors:Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G, Weiss, M.S.
Deposit date:2020-02-12
Release date:2020-06-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
7S19
DownloadVisualize
BU of 7s19 by Molmil
Crystal structure of cruzain with gallinamide analog from 2-indolyl series
Descriptor: Cruzipain, N,N-dimethyl-L-valyl-L-leucyl-N-[(3S)-6-{(2S)-2-[(1H-indol-3-yl)methyl]-3-methoxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl}-6-oxo-1-phenylhexan-3-yl]-L-leucinamide
Authors:Sharma, V, Podust, L.M.
Deposit date:2021-09-01
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Intramolecular Interactions Enhance the Potency of Gallinamide A Analogues against Trypanosoma cruzi .
J.Med.Chem., 65, 2022
7S18
DownloadVisualize
BU of 7s18 by Molmil
Crystal structure of cruzain with gallinamide analog from 2-biaryl series
Descriptor: Cruzipain, N,N-dimethyl-L-valyl-L-leucyl-N-[(3S)-6-{(2S)-2-[([1,1'-biphenyl]-4-yl)methyl]-3-methoxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl}-6-oxo-1-phenylhexan-3-yl]-L-leucinamide
Authors:Sharma, V, Podust, L.M.
Deposit date:2021-09-01
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Intramolecular Interactions Enhance the Potency of Gallinamide A Analogues against Trypanosoma cruzi .
J.Med.Chem., 65, 2022
4NPV
DownloadVisualize
BU of 4npv by Molmil
Crystal structure of human PDE1B bound to inhibitor 7A (6,7,8-trimethoxy-N-(pentan-3-yl)quinazolin-4-amine)
Descriptor: 6,7,8-trimethoxy-N-(pentan-3-yl)quinazolin-4-amine, Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B, MAGNESIUM ION, ...
Authors:Pandit, J, Evdomikov, A, Mansour, M, Simons, S.
Deposit date:2013-11-22
Release date:2014-07-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Small-molecule phosphodiesterase probes: discovery of potent and selective CNS-penetrable quinazoline inhibitors of PDE1
MEDCHEMCOMM, 2014
5R1Z
DownloadVisualize
BU of 5r1z by Molmil
PanDDA analysis group deposition -- Endothiapepsin in complex with fragment F2X-Entry D11, DMSO-free
Descriptor: 3-(1,3-thiazol-2-yl)propanoic acid, Endothiapepsin
Authors:Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G, Weiss, M.S.
Deposit date:2020-02-13
Release date:2020-06-03
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (1.067 Å)
Cite:F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
2D1T
DownloadVisualize
BU of 2d1t by Molmil
Crystal structure of the thermostable Japanese Firefly Luciferase red-color emission S286N mutant complexed with High-energy intermediate analogue
Descriptor: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, CHLORIDE ION, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
3EPW
DownloadVisualize
BU of 3epw by Molmil
Crystal structure of Trypanosoma vivax nucleoside hydrolase in complex with the inhibitor (2R,3R,4S)-1-[(4-hydroxy-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidin-3,4-diol
Descriptor: 7-(((2R,3R,4S)-3,4-dihydroxy-2-(hydroxymethyl)pyrrolidin-1-yl)methyl)-3H-pyrrolo[3,2-d]pyrimidin-4(5H)-one, CALCIUM ION, IAG-nucleoside hydrolase, ...
Authors:Versees, W, Goeminne, A, Berg, M, Vandemeulebroucke, A, Haemers, A, Augustyns, K, Steyaert, J.
Deposit date:2008-09-30
Release date:2009-03-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structures of T. vivax nucleoside hydrolase in complex with new potent and specific inhibitors.
Biochim.Biophys.Acta, 1794, 2009
1BEU
DownloadVisualize
BU of 1beu by Molmil
TRP SYNTHASE (D60N-IPP-SER) WITH K+
Descriptor: INDOLE-3-PROPANOL PHOSPHATE, POTASSIUM ION, TRYPTOPHAN SYNTHASE, ...
Authors:Rhee, S, Mozzarelli, A, Miles, E.W, Davies, D.R.
Deposit date:1998-05-18
Release date:1998-08-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cryocrystallography and microspectrophotometry of a mutant (alpha D60N) tryptophan synthase alpha 2 beta 2 complex reveals allosteric roles of alpha Asp60.
Biochemistry, 37, 1998
7TAN
DownloadVisualize
BU of 7tan by Molmil
Structure of VRK1 C-terminal tail bound to nucleosome core particle
Descriptor: Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, Histone H3.2, ...
Authors:Spangler, C.J, Budziszewski, G.R, McGinty, R.K.
Deposit date:2021-12-21
Release date:2022-05-04
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Multivalent DNA and nucleosome acidic patch interactions specify VRK1 mitotic localization and activity.
Nucleic Acids Res., 50, 2022
6B5M
DownloadVisualize
BU of 6b5m by Molmil
Structure of PfCSP peptide 21 with human protective antibody CIS43
Descriptor: 1,2-ETHANEDIOL, CIS43 Fab Heavy chain, CIS43 Fab Light chain, ...
Authors:Pancera, M, Weidle, C.
Deposit date:2017-09-29
Release date:2018-03-21
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018
6B5N
DownloadVisualize
BU of 6b5n by Molmil
Structure of PfCSP peptide 25 with human protective antibody CIS43
Descriptor: CIS43 Fab Heavy chain, CIS43 Fab Light chain, pfCSP peptide 25: ASN-VAL-ASP-PRO-ASN-ALA-ASN-PRO-ASN-VAL-ASP
Authors:Pancera, M, Weidle, C.
Deposit date:2017-09-29
Release date:2018-03-21
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018
6B5O
DownloadVisualize
BU of 6b5o by Molmil
Structure of PfCSP peptide 29 with human protective antibody CIS43
Descriptor: CIS43 Fab Heavy chain, CIS43 Fab Light chain, PfCSP peptide 29: ASN-PRO-ASN-ALA-ASN-PRO-ASN-ALA-ASN
Authors:Pancera, M, Weidle, C.
Deposit date:2017-09-29
Release date:2018-03-21
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018
6B5L
DownloadVisualize
BU of 6b5l by Molmil
Structure of PfCSP peptide 20 with human protective antibody CIS43
Descriptor: CIS43 Fab Heavy chain, CIS43 Fab Light Chain, PfCSP peptide 20: ASN-PRO-ASP-PRO-ASN-ALA-ASN-PRO-ASN-VAL
Authors:Pancera, M, Weidle, C.
Deposit date:2017-09-29
Release date:2018-03-21
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018
7BVY
DownloadVisualize
BU of 7bvy by Molmil
Crystal structure of MreB 5 of Spiroplasma citri bound to AMPPNP
Descriptor: Cell shape determining protein MreB, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Pande, V, Gayathri, P.
Deposit date:2020-04-12
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:MreB5 Is a Determinant of Rod-to-Helical Transition in the Cell-Wall-less Bacterium Spiroplasma.
Curr.Biol., 30, 2020
6BZQ
DownloadVisualize
BU of 6bzq by Molmil
Crystal structure of halogenase PltM in complex with FAD
Descriptor: BROMIDE ION, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Pang, A.H, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2017-12-25
Release date:2019-03-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Unusual substrate and halide versatility of phenolic halogenase PltM.
Nat Commun, 10, 2019
7BVZ
DownloadVisualize
BU of 7bvz by Molmil
Crystal structure of MreB5 of Spiroplasma citri bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell shape determining protein MreB, MAGNESIUM ION, ...
Authors:Pande, V, Bagde, S.R, Gayathri, P.
Deposit date:2020-04-12
Release date:2020-10-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:MreB5 Is a Determinant of Rod-to-Helical Transition in the Cell-Wall-less Bacterium Spiroplasma.
Curr.Biol., 30, 2020
6BZA
DownloadVisualize
BU of 6bza by Molmil
Crystal structure of halogenase PltM in complex with phloroglucinol and FAD
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Halogenase PltM, ...
Authors:Pang, A.H, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2017-12-22
Release date:2019-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Unusual substrate and halide versatility of phenolic halogenase PltM.
Nat Commun, 10, 2019
6BZT
DownloadVisualize
BU of 6bzt by Molmil
Crystal structure of halogenase PltM L111Y mutant in complex with FAD
Descriptor: BROMIDE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Pang, A.H, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2017-12-26
Release date:2019-03-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unusual substrate and halide versatility of phenolic halogenase PltM.
Nat Commun, 10, 2019
6GX9
DownloadVisualize
BU of 6gx9 by Molmil
Crystal structure of the TNPO3 - CPSF6 RSLD complex
Descriptor: BENZAMIDINE, BICINE, Cleavage and polyadenylation specificity factor subunit 6, ...
Authors:Cherepanov, P, Cook, N.
Deposit date:2018-06-26
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Differential role for phosphorylation in alternative polyadenylation function versus nuclear import of SR-like protein CPSF6.
Nucleic Acids Res., 47, 2019
4Z6K
DownloadVisualize
BU of 4z6k by Molmil
Alcohol dehydrogenase from the antarctic psychrophile Moraxella sp. TAE 123
Descriptor: Alcohol dehydrogenase, ZINC ION
Authors:Papanikolau, Y, Bouriotis, V, Petratos, K.
Deposit date:2015-04-05
Release date:2016-04-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and Dynamics of a Thermostable Alcohol Dehydrogenase from the Antarctic Psychrophile Moraxella sp. TAE123
Acs Omega, 2020
6GYR
DownloadVisualize
BU of 6gyr by Molmil
Transcription factor dimerization activates the p300 acetyltransferase
Descriptor: Histone acetyltransferase p300, ZINC ION, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R,20R)-20-carbamoyl-3-hydroxy-2,2-dimethyl-4,8,14,22-tetraoxo-12-thia-5,9,15,21-tetraazatricos-1-yl dihydrogen diphosphate
Authors:Panne, D, Ortega, E.
Deposit date:2018-07-01
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Transcription factor dimerization activates the p300 acetyltransferase.
Nature, 562, 2018
6BZZ
DownloadVisualize
BU of 6bzz by Molmil
Crystal structure of halogenase PltM in complex with partially bound FAD
Descriptor: CALCIUM ION, FLAVIN-ADENINE DINUCLEOTIDE, Halogenase PltM
Authors:Pang, A.H, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2017-12-26
Release date:2019-03-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Unusual substrate and halide versatility of phenolic halogenase PltM.
Nat Commun, 10, 2019
5OW4
DownloadVisualize
BU of 5ow4 by Molmil
Crystal structure of a protease-resistant fragment of the Trypanosoma cruzi gamete fusion protein HAP2 ectodomain
Descriptor: Uncharacterized protein
Authors:Fedry, J, Rey, F.A, Krey, T.
Deposit date:2017-08-30
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Evolutionary diversification of the HAP2 membrane insertion motifs to drive gamete fusion across eukaryotes.
PLoS Biol., 16, 2018
1TRY
DownloadVisualize
BU of 1try by Molmil
STRUCTURE OF INHIBITED TRYPSIN FROM FUSARIUM OXYSPORUM AT 1.55 ANGSTROMS
Descriptor: ISOPROPYL ALCOHOL, PHOSPHORYLISOPROPANE, TRYPSIN
Authors:Rypniewski, W.R, Dambmann, C, Von Der Osten, C, Dauter, M, Wilson, K.S.
Deposit date:1994-03-07
Release date:1996-01-01
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of inhibited trypsin from Fusarium oxysporum at 1.55 A.
Acta Crystallogr.,Sect.D, 51, 1995
5R9H
DownloadVisualize
BU of 5r9h by Molmil
PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment TCJ658 in complex with MAP kinase p38-alpha
Descriptor: CHLORIDE ION, MAGNESIUM ION, Mitogen-activated protein kinase 14, ...
Authors:De Nicola, G.F, Nichols, C.E.
Deposit date:2020-03-04
Release date:2020-07-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes.
J.Med.Chem., 63, 2020

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon