PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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1SYZ	Solution structure of the S. Cerevisiae U6 intramolecular stem loop (ISL) RNA at pH 5.7 Descriptor: U6 INTRAMOLECULAR STEM-LOOP RNA Authors: Reiter, N.J, Blad, H, Abildgaard, F, Butcher, S.E. Deposit date: 2004-04-02 Release date: 2004-11-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Dynamics in the U6 RNA Intramolecular Stem-Loop: A Base Flipping Conformational Change. Biochemistry, 43, 2004
2ES5	Structure of the SRE RNA Descriptor: 5'-R(*GP*GP*AP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*UP*CP*C)-3' Authors: Allain, F.H.T. Deposit date: 2005-10-25 Release date: 2006-01-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Shape-specific recognition in the structure of the Vts1p SAM domain with RNA. Nat.Struct.Mol.Biol., 13, 2006
1PJO	Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT Descriptor: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', MAGNESIUM ION Authors: Kopka, M.L, Lavelle, L, Han, G.W, Ng, H.-L, Dickerson, R.E. Deposit date: 2003-06-03 Release date: 2003-12-09 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.1 Å) Cite: An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H J.Mol.Biol., 334, 2003
4A4K	Crystal structure of the S. cerevisiae Ski2 insertion domain Descriptor: ANTIVIRAL HELICASE SKI2, ZINC ION Authors: Halbach, F, Rode, M, Conti, E. Deposit date: 2011-10-17 Release date: 2011-12-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.25 Å) Cite: The Crystal Structure of S. Cerevisiae Ski2, a Dexh Helicase Associated with the Cytoplasmic Functions of the Exosome. RNA, 18, 2012
3G80	Nodamura virus protein b2, RNA-binding domain Descriptor: Protein B2 Authors: Korber, S, Shaik Syed Ali, P, Chen, J.C. Deposit date: 2009-02-11 Release date: 2010-01-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the RNA-Binding Domain of Nodamura Virus Protein B2, a Suppressor of RNA Interference. Biochemistry, 48, 2009
2I7E	GAAA tetralooop receptor complex with associated cobalt hexammine. Descriptor: 43-MER, COBALT HEXAMMINE(III) Authors: Davis, J.H, Butcher, S.E. Deposit date: 2006-08-30 Release date: 2007-04-03 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Role of metal ions in the tetraloop-receptor complex as analyzed by NMR. Rna, 13, 2007
3NPN	Structure of the s-adenosylhomocysteine riboswitch at 3.0A Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH Authors: Reyes, F.E, Edwards, A.E, Batey, R.T. Deposit date: 2010-06-28 Release date: 2010-10-06 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.792 Å) Cite: Structural basis for recognition of S-adenosylhomocysteine by riboswitches. Rna, 16, 2010
1DDY	MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER Descriptor: COBALAMIN, METHYLAMINE, VITAMIN B12 BINDING RNA Authors: Sussman, D, Nix, J.C, Wilson, C. Deposit date: 1999-11-12 Release date: 2000-01-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3 Å) Cite: The structural basis for molecular recognition by the vitamin B 12 RNA aptamer. Nat.Struct.Biol., 7, 2000
3NPQ	Structure of the S-adenosylhomocysteine riboswitch at 2.18 A Descriptor: COBALT HEXAMMINE(III), S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH Authors: Reyes, F.E, Edwards, A.E, Batey, R.T. Deposit date: 2010-06-28 Release date: 2010-10-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1814 Å) Cite: Structural basis for recognition of S-adenosylhomocysteine by riboswitches. Rna, 16, 2010
2WB1	The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase Descriptor: DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT, ... Authors: Korkhin, Y, Unligil, U.M, Littlefield, O, Nelson, P.J, Stuart, D.I, Sigler, P.B, Bell, S.D, Abrescia, N.G.A. Deposit date: 2009-02-19 Release date: 2009-05-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.52 Å) Cite: Evolution of Complex RNA Polymerase: The Complete Archaeal RNA Polymerase Structure Plos Biol., 7, 2009
3QTN	Structure of S. pombe nuclear import adaptor Nro1 (Space group P6522) Descriptor: Uncharacterized protein C4B3.07 Authors: Rispal, D, Henri, J, van Tilbeurgh, H, Graille, M, Seraphin, B. Deposit date: 2011-02-23 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.499 Å) Cite: Structural and functional analysis of Nro1/Ett1: a protein involved in translation termination in S. cerevisiae and in O2-mediated gene control in S. pombe Rna, 17, 2011
3QTM	Structure of S. pombe nuclear import adaptor Nro1 (Space group P21) Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ... Authors: Rispal, D, Henri, J, van Tilbeurgh, H, Graille, M, Seraphin, B. Deposit date: 2011-02-23 Release date: 2011-09-21 Last modified: 2018-01-03 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural and functional analysis of Nro1/Ett1: a protein involved in translation termination in S. cerevisiae and in O2-mediated gene control in S. pombe Rna, 17, 2011
3B5A	Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active site Descriptor: 29-mer Loop A and Loop B Ribozyme strand, COBALT HEXAMMINE(III), Loop A Substrate strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-10-25 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
2YKG	Structural insights into RNA recognition by RIG-I Descriptor: 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3', PROBABLE ATP-DEPENDENT RNA HELICASE DDX58, SULFATE ION, ... Authors: Luo, D, Pyle, A.M. Deposit date: 2011-05-27 Release date: 2011-10-26 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Insights Into RNA Recognition by Rig-I. Cell(Cambridge,Mass.), 147, 2011
3B58	Minimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active Site Descriptor: 29-mer Loop A and Loop B Ribozyme strand, COBALT HEXAMMINE(III), Loop A Substrate strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-10-25 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
6DB9	Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer Descriptor: Fab-Heavy-Chain, Fab-Light-Chain, MAGNESIUM ION, ... Authors: Shao, Y, Shelke, S.A, Laski, A, Piccirilli, J.A. Deposit date: 2018-05-02 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.025 Å) Cite: Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif. Nat Commun, 9, 2018
6DB8	Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer Descriptor: 2-[(Z)-(3-methyl-1,3-benzoxazol-2(3H)-ylidene)methyl]-3-(3-sulfopropyl)-1,3-benzothiazol-3-ium, Fab-Heavy chain, Fab-Light chain, ... Authors: Shao, Y, Shelke, S.A, Laski, A, Piccirilli, J.A. Deposit date: 2018-05-02 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.86541343 Å) Cite: Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif. Nat Commun, 9, 2018
1XOK	crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide Descriptor: BROMIDE ION, Coat protein, alfalfa mosaic virus RNA 3' UTR Authors: Guogas, L.M, Filman, D.J, Hogle, J.M, Gehrke, L. Deposit date: 2004-10-06 Release date: 2005-01-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Cofolding organizes alfalfa mosaic virus RNA and coat protein for replication. Science, 306, 2004
8FEO	16mer self-complementary duplex RNA with two separated native U:U pairs Descriptor: MAGNESIUM ION, RNA 16mer, STRONTIUM ION Authors: Fang, Z, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.52 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
8FEQ	16mer self-complementary duplex RNA with two separated s(2)U:s(2)U pairs Descriptor: CALCIUM ION, RNA 16mer with two separated s(2)U Authors: Fang, Z, Zhou, L, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
1EXY	SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET Descriptor: HTLV-1 REX PEPTIDE, RNA APTAMER, 33-MER Authors: Jiang, F, Gorin, A, Hu, W, Majumdar, A, Baskerville, S, Xu, W, Ellington, A, Patel, D.J. Deposit date: 2000-05-05 Release date: 2000-05-15 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples. Structure Fold.Des., 7, 1999
2WAQ	The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase Descriptor: DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT, ... Authors: Korkhin, Y, Unligil, U.M, Littlefield, O, Nelson, P.J, Stuart, D.I, Sigler, P.B, Bell, S.D, Abrescia, N.G.A. Deposit date: 2009-02-11 Release date: 2009-05-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure. Plos Biol., 7, 2009
3NYB	Structure and function of the polymerase core of TRAMP, a RNA surveillance complex Descriptor: Poly(A) RNA polymerase protein 2, Protein AIR2, ZINC ION Authors: Reinisch, K.M, Hamill, S. Deposit date: 2010-07-14 Release date: 2010-08-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7007 Å) Cite: Structure and function of the polymerase core of TRAMP, a RNA surveillance complex. Proc.Natl.Acad.Sci.USA, 107, 2010
2R7S	Crystal Structure of Rotavirus SA11 VP1 / RNA (UGUGCC) complex Descriptor: PHOSPHATE ION, RNA (5'-R(*UP*GP*UP*GP*CP*C)-3'), RNA-dependent RNA polymerase Authors: Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L. Deposit date: 2007-09-10 Release date: 2008-07-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. Structure, 16, 2008
2R7X	Crystal Structure of Rotavirus SA11 VP1/RNA (UGUGACC)/GTP complex Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA (5'-R(*UP*GP*UP*GP*AP*CP*C)-3'), RNA-dependent RNA polymerase Authors: Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L. Deposit date: 2007-09-10 Release date: 2008-07-29 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. Structure, 16, 2008

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