PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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4E78	Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin loop deletion bound to primer-template RNA with 3'-dG Descriptor: 5'-R(*U*AP*CP*CP*GP*(GDO))-3', PROTEIN (RNA-directed RNA polymerase) Authors: Edwards, T.E, Mosley, R.T. Deposit date: 2012-03-16 Release date: 2012-04-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of hepatitis C virus polymerase in complex with primer-template RNA. J.Virol., 86, 2012
4S0K	Biphenylalanine modified threonyl-tRNA synthetase from Pyrococcus abyssi: 11BIF, 42F, 79V, and 123A mutant Descriptor: DI(HYDROXYETHYL)ETHER, Threonine--tRNA ligase Authors: Pearson, A.D, Mills, J.H, Song, Y, Nasertorabi, F, Han, G.W, Baker, D, Stevens, R.C, Schultz, P.G. Deposit date: 2014-12-31 Release date: 2015-03-18 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Transition states. Trapping a transition state in a computationally designed protein bottle. Science, 347, 2015
4S02	Biphenylalanine modified threonyl-tRNA synthetase from Pyrococcus abyssi: I11BIF, F42W, Y79A, and F123Y mutant Descriptor: DI(HYDROXYETHYL)ETHER, Threonine--tRNA ligase Authors: Pearson, A.D, Mills, J.H, Song, Y, Nasertorabi, F, Han, G.W, Baker, D, Stevens, R.C, Schultz, P.G. Deposit date: 2014-12-30 Release date: 2015-03-18 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Transition states. Trapping a transition state in a computationally designed protein bottle. Science, 347, 2015
2KUU	Solution Structure of K10 TLS RNA (GC mutant in upper helix) Descriptor: K10 TLS RNA Authors: Bullock, S.L, Ringel, I, Ish-Horowicz, D, Lukavsky, P.J. Deposit date: 2010-03-01 Release date: 2010-05-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila. Nat.Struct.Mol.Biol., 17, 2010
4ILM	CRISPR RNA Processing endoribonuclease Descriptor: CRISPR-associated endoribonuclease Cas6 2, RNA (5'-R(*GP*CP*UP*AP*AP*UP*CP*UP*AP*CP*UP*AP*UP*AP*GP*A)-3') Authors: Shao, Y, Li, H. Deposit date: 2012-12-31 Release date: 2013-03-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.068 Å) Cite: Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6. Structure, 21, 2013
4ILL	Recognition and Cleavage of a non-structured CRISPR RNA by its Processing Endoribonuclease Cas6 Descriptor: CRISPR-associated endoribonuclease Cas6 2, RNA (5'-R(*GP*CP*UP*AP*AP*UP*CP*UP*AP*CP*UP*AP*UP*AP*GP*AP*AP*UP*UP*GP*AP*AP*AP*G)-3') Authors: Shao, Y, Li, H. Deposit date: 2012-12-31 Release date: 2013-03-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.484 Å) Cite: Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6. Structure, 21, 2013
2KUW	Solution Structure of K10 TLS RNA (A-form mutant in lower helix) Descriptor: K10 TLS RNA Authors: Bullock, S.L, Ringel, I, Ish-Horowicz, D, Lukavsky, P.J. Deposit date: 2010-03-01 Release date: 2010-05-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila. Nat.Struct.Mol.Biol., 17, 2010
3LRR	Crystal structure of human RIG-I CTD bound to a 12 bp AU rich 5' ppp dsRNA Descriptor: Probable ATP-dependent RNA helicase DDX58, RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U)-3'), ZINC ION Authors: Li, P. Deposit date: 2010-02-11 Release date: 2010-06-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The Structural Basis of 5' Triphosphate Double-Stranded RNA Recognition by RIG-I C-Terminal Domain. Structure, 18, 2010
2N8L	Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the KH3 RNA target Descriptor: Insulin-like growth factor 2 mRNA-binding protein 1, RNA (5'-R(P*GP*CP*AP*CP*AP*CP*CP*C)-3') Authors: Nicastro, G, Candel, A.M, Ramos, A, Hollingworth, D. Deposit date: 2015-10-21 Release date: 2017-01-25 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Zipcode-binding-protein-1 KH3KH4(DD) domains in complex with the RNA target GCACACCC To be Published
1HQ1	STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE Descriptor: 4.5S RNA DOMAIN IV, MAGNESIUM ION, POTASSIUM ION, ... Authors: Batey, R.T, Sagar, M.B, Doudna, J.A. Deposit date: 2000-12-13 Release date: 2001-01-03 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.52 Å) Cite: Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle. J.Mol.Biol., 307, 2001
2DB3	Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ATP-dependent RNA helicase vasa, MAGNESIUM ION, ... Authors: Sengoku, T, Nureki, O, Nakamura, A, Kobayashi, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-12-14 Release date: 2006-05-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell(Cambridge,Mass.), 125, 2006
3LRN	Crystal structure of human RIG-I CTD bound to a 14 bp GC 5' ppp dsRNA Descriptor: Probable ATP-dependent RNA helicase DDX58, RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), ZINC ION Authors: Li, P. Deposit date: 2010-02-11 Release date: 2010-06-02 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The Structural Basis of 5' Triphosphate Double-Stranded RNA Recognition by RIG-I C-Terminal Domain. Structure, 18, 2010
2WB1	The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase Descriptor: DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT, ... Authors: Korkhin, Y, Unligil, U.M, Littlefield, O, Nelson, P.J, Stuart, D.I, Sigler, P.B, Bell, S.D, Abrescia, N.G.A. Deposit date: 2009-02-19 Release date: 2009-05-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.52 Å) Cite: Evolution of Complex RNA Polymerase: The Complete Archaeal RNA Polymerase Structure Plos Biol., 7, 2009
7OA3	Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium hexammine co-crystallized form) Descriptor: Chili RNA Aptamer, DMHBO+, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Mieczkowski, M, Pena, V, Hoebartner, C. Deposit date: 2021-04-19 Release date: 2021-06-16 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine. Nat Commun, 12, 2021
7OAX	Crystal structure of the Chili RNA aptamer in complex with DMHBO+ Descriptor: CHLORIDE ION, Chili RNA Aptamer, DMHBO+, ... Authors: Mieczkowski, M, Pena, V, Hoebartner, C. Deposit date: 2021-04-20 Release date: 2021-06-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine. Nat Commun, 12, 2021
7OAW	Crystal structure of the Chili RNA aptamer in complex with DMHBI+ Descriptor: CHLORIDE ION, Chili RNA Aptamer, DMHBI+, ... Authors: Mieczkowski, M, Pena, V, Hoebartner, C. Deposit date: 2021-04-20 Release date: 2021-06-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine. Nat Commun, 12, 2021
7OAV	Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium III hexammine soaking crystal form) Descriptor: CHLORIDE ION, Chili RNA Aptamer, DMHBO+, ... Authors: Mieczkowski, M, Pena, V, Hoebartner, C. Deposit date: 2021-04-20 Release date: 2021-06-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine. Nat Commun, 12, 2021
2Y9H	Structure A of CRISPR endoribonuclease Cse3 bound to 19 nt RNA Descriptor: 5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3', CSE3 Authors: Sashital, D.G, Jinek, M, Doudna, J.A. Deposit date: 2011-02-14 Release date: 2011-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: An RNA-Induced Conformational Change Required for Crispr RNA Cleavage by the Endoribonuclease Cse3. Nat.Struct.Mol.Biol., 18, 2011
2Y8W	Structure of CRISPR endoribonuclease Cse3 bound to 20 nt RNA Descriptor: 5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP*G)-3', CSE3 Authors: Sashital, D.G, Jinek, M, Doudna, J.A. Deposit date: 2011-02-11 Release date: 2011-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.8 Å) Cite: An RNA-Induced Conformational Change Required for Crispr RNA Cleavage by the Endoribonuclease Cse3. Nat.Struct.Mol.Biol., 18, 2011
2Y8Y	Structure B of CRISPR endoribonuclease Cse3 bound to 19 nt RNA Descriptor: 5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*U)-3', CSE3 Authors: Sashital, D.G, Jinek, M, Doudna, J.A. Deposit date: 2011-02-11 Release date: 2011-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.44 Å) Cite: An RNA-Induced Conformational Change Required for Crispr RNA Cleavage by the Endoribonuclease Cse3. Nat.Struct.Mol.Biol., 18, 2011
3KNC	Crystal structure of the CeNA-RNA hybrid octamer ce(GCGTAGCG):r(CGCUACGC) Descriptor: 5'-D(*(XGR)P*(XCR)P*(XGR)P*(XTR)P*(XAR)P*(XGR)P*(XCR)P*(XGR)P*(XGR))-3', 5'-R(*CP*GP*CP*UP*AP*CP*GP*C)-3', MAGNESIUM ION Authors: Ovaere, M, Van Meervelt, L. Deposit date: 2009-11-12 Release date: 2010-12-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The Crystal Structure of the CeNA:RNA Hybrid ce(GCGTAGCG):r(CGCUACGC). Chemistry, 17, 2011
1Q0U	Crystal Structure of the BstDEAD N-terminal Domain Descriptor: BstDEAD Authors: Carmel, A.B, Matthews, B.W. Deposit date: 2003-07-17 Release date: 2003-10-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of the BstDEAD N-terminal domain: a novel DEAD protein from Bacillus stearothermophilus RNA, 10, 2004
3KS4	Crystal structure of Reston ebolavirus VP35 RNA binding domain Descriptor: Polymerase cofactor VP35 Authors: Kimberlin, C.R, Bornholdt, Z.A, Li, S, Woods, V.L, Macrae, I.J, Saphire, E.O. Deposit date: 2009-11-20 Release date: 2010-01-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression. Proc.Natl.Acad.Sci.USA, 107, 2009
2WAQ	The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase Descriptor: DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO11 SUBUNIT, DNA-DIRECTED RNA POLYMERASE RPO12 SUBUNIT, ... Authors: Korkhin, Y, Unligil, U.M, Littlefield, O, Nelson, P.J, Stuart, D.I, Sigler, P.B, Bell, S.D, Abrescia, N.G.A. Deposit date: 2009-02-11 Release date: 2009-05-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure. Plos Biol., 7, 2009
3OG8	Crystal structure of human RIG-I CTD bound to a 14-bp blunt-ended dsRNA Descriptor: Antiviral innate immune response receptor RIG-I, RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), ZINC ION Authors: Li, P. Deposit date: 2010-08-16 Release date: 2010-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of RIG-I C-terminal domain bound to blunt-ended double-strand RNA without 5' triphosphate. Nucleic Acids Res., 39, 2011

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