Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9G74
DownloadVisualize
BU of 9g74 by Molmil
Mouse mitochondrial DNA polymerase gamma ternary complex in replication conformer
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ...
Authors:Valenzuela, S, Falkenberg, M.
Deposit date:2024-07-19
Release date:2025-06-04
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity.
Nat Commun, 16, 2025
9G75
DownloadVisualize
BU of 9g75 by Molmil
Mouse mitochondrial DNA polymerase gamma ternary complex in intermediate conformer
Descriptor: DNA (primer strand), DNA (template strand), DNA polymerase subunit gamma-1, ...
Authors:Valenzuela, S, Falkenberg, M.
Deposit date:2024-07-19
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity.
Nat Commun, 16, 2025
2ERJ
DownloadVisualize
BU of 2erj by Molmil
Crystal structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Debler, E.W, Stauber, D.J, Wilson, I.A.
Deposit date:2005-10-25
Release date:2006-02-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the IL-2 signaling complex: Paradigm for a heterotrimeric cytokine receptor.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1A2B
DownloadVisualize
BU of 1a2b by Molmil
HUMAN RHOA COMPLEXED WITH GTP ANALOGUE
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, MAGNESIUM ION, TRANSFORMING PROTEIN RHOA
Authors:Ihara, K, Muraguchi, S, Kato, M, Shimizu, T, Shirakawa, M, Kuroda, S, Kaibuchi, K, Hakoshima, T.
Deposit date:1997-12-26
Release date:1998-06-17
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human RhoA in a dominantly active form complexed with a GTP analogue.
J.Biol.Chem., 273, 1998
9IBZ
DownloadVisualize
BU of 9ibz by Molmil
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in human-like error-editing conformer (composite)
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ...
Authors:Valenzuela, S, Falkenberg, M.
Deposit date:2025-02-14
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity.
Nat Commun, 16, 2025
9IC1
DownloadVisualize
BU of 9ic1 by Molmil
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in replication conformer
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ...
Authors:Valenzuela, S, Falkenberg, M.
Deposit date:2025-02-14
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity.
Nat Commun, 16, 2025
3GCS
DownloadVisualize
BU of 3gcs by Molmil
Human P38 MAP kinase in complex with Sorafenib
Descriptor: 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Gruetter, C, Simard, J.R, Rauh, D.
Deposit date:2009-02-22
Release date:2009-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Development of a fluorescent-tagged kinase assay system for the detection and characterization of allosteric kinase inhibitors.
J.Am.Chem.Soc., 131, 2009
3GCU
DownloadVisualize
BU of 3gcu by Molmil
Human P38 MAP kinase in complex with RL48
Descriptor: 1-{3-[(6-aminoquinazolin-4-yl)amino]phenyl}-3-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]urea, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mitogen-activated protein kinase 14, ...
Authors:Gruetter, C, Simard, J.R, Getlik, M, Rauh, D.
Deposit date:2009-02-22
Release date:2009-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Development of a fluorescent-tagged kinase assay system for the detection and characterization of allosteric kinase inhibitors.
J.Am.Chem.Soc., 131, 2009
1NHA
DownloadVisualize
BU of 1nha by Molmil
Solution Structure of the Carboxyl-Terminal Domain of RAP74 and NMR Characterization of the FCP-Binding Sites of RAP74 and CTD of RAP74, the subunit of Human TFIIF
Descriptor: Transcription initiation factor IIF, alpha subunit
Authors:Nguyen, B.D, Chen, H.T, Kobor, M.S, Greenblatt, J, Legault, P, Omichinski, J.G.
Deposit date:2002-12-19
Release date:2003-02-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of the Carboxyl-Terminal Domain of RAP74 and NMR Characterization of the FCP1-Binding Sites of RAP74 and Human TFIIB.
Biochemistry, 42, 2003
3HL7
DownloadVisualize
BU of 3hl7 by Molmil
Crystal Structure of Human p38alpha complexed with SD-0006
Descriptor: 2-fluoro-4-[4-(4-fluorophenyl)-1H-pyrazol-3-yl]pyridine, 2-{4-[5-(4-chlorophenyl)-4-pyrimidin-4-yl-1H-pyrazol-3-yl]piperidin-1-yl}-2-oxoethanol, Mitogen-activated protein kinase 14
Authors:Shieh, H.-S, Kurumbail, R.G, Stegeman, R.A, Williams, J.M.
Deposit date:2009-05-26
Release date:2009-07-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural bioinformatics-based prediction of exceptional selectivity of p38 MAP kinase inhibitor PH-797804.
Biochemistry, 48, 2009
3HLL
DownloadVisualize
BU of 3hll by Molmil
Crystal Structure of Human p38alpha complexed with PH-797804
Descriptor: 2-fluoro-4-[4-(4-fluorophenyl)-1H-pyrazol-3-yl]pyridine, 3-{3-bromo-4-[(2,4-difluorobenzyl)oxy]-6-methyl-2-oxopyridin-1(2H)-yl}-N,4-dimethylbenzamide, HYPOPHOSPHITE, ...
Authors:Shieh, H.-S, Williams, J.M, Stegeman, R.A, Kurumbail, R.G.
Deposit date:2009-05-27
Release date:2009-07-14
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural bioinformatics-based prediction of exceptional selectivity of p38 MAP kinase inhibitor PH-797804.
Biochemistry, 48, 2009
6WK2
DownloadVisualize
BU of 6wk2 by Molmil
SETD3 mutant (N255V) in Complex with an Actin Peptide with His73 Replaced with Methionine
Descriptor: 1,2-ETHANEDIOL, Actin, cytoplasmic 2, ...
Authors:Dai, S, Horton, J.R, Cheng, X.
Deposit date:2020-04-15
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Characterization of SETD3 methyltransferase-mediated protein methionine methylation.
J.Biol.Chem., 295, 2020
9IC0
DownloadVisualize
BU of 9ic0 by Molmil
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in mouse-like error-editing conformer (composite)
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ...
Authors:Valenzuela, S, Falkenberg, M.
Deposit date:2025-02-14
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity.
Nat Commun, 16, 2025
9IBX
DownloadVisualize
BU of 9ibx by Molmil
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in replication conformer
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ...
Authors:Valenzuela, S, Falkenberg, M.
Deposit date:2025-02-14
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity.
Nat Commun, 16, 2025
9IC3
DownloadVisualize
BU of 9ic3 by Molmil
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in mouse-like error-editing conformer (composite)
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ...
Authors:Valenzuela, S, Falkenberg, M.
Deposit date:2025-02-14
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity.
Nat Commun, 16, 2025
8R7Z
DownloadVisualize
BU of 8r7z by Molmil
transcription factor BARHL2 homodimer with spacing four bp
Descriptor: BarH-like 2 homeobox protein, DNA (5'-D(P*AP*CP*CP*GP*TP*TP*TP*AP*G)-3'), DNA (5'-D(P*CP*TP*AP*AP*AP*CP*GP*GP*T)-3'), ...
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-11-27
Release date:2024-12-04
Last modified:2025-06-11
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:DNA-guided transcription factor interactions extend human gene regulatory code.
Nature, 641, 2025
3UIN
DownloadVisualize
BU of 3uin by Molmil
Complex between human RanGAP1-SUMO2, UBC9 and the IR1 domain from RanBP2
Descriptor: E3 SUMO-protein ligase RanBP2, Ran GTPase-activating protein 1, SUMO-conjugating enzyme UBC9, ...
Authors:Gareau, J.R, Reverter, D, Lima, C.D.
Deposit date:2011-11-05
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:Determinants of small ubiquitin-like modifier 1 (SUMO1) protein specificity, E3 ligase, and SUMO-RanGAP1 binding activities of nucleoporin RanBP2.
J.Biol.Chem., 287, 2012
8XBK
DownloadVisualize
BU of 8xbk by Molmil
Crystal Structure of Human Liver Fructose-1,6-bisphosphatase Complexed with a Covalent Inhibitor
Descriptor: 1,2-ETHANEDIOL, Fructose-1,6-bisphosphatase 1, MAGNESIUM ION, ...
Authors:Cao, H, Zhang, X, Ren, Y, Wan, J.
Deposit date:2023-12-06
Release date:2024-11-20
Last modified:2024-12-11
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structure-Guided Design of Affinity/Covalent-Bond Dual-Driven Inhibitors Targeting the AMP Site of FBPase.
J.Med.Chem., 67, 2024
8DL7
DownloadVisualize
BU of 8dl7 by Molmil
Cryo-EM structure of human ferroportin/slc40 bound to minihepcidin PR73 in nanodisc
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 11F9 heavy-chain, 11F9 light-chain, ...
Authors:Shen, J, Wilbon, A.S, Pan, Y, Zhou, M.
Deposit date:2022-07-07
Release date:2022-12-07
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of ferroportin inhibition by minihepcidin PR73.
Plos Biol., 21, 2023
5V8W
DownloadVisualize
BU of 5v8w by Molmil
Crystal structure of human Integrator IntS9-IntS11 CTD complex
Descriptor: Integrator complex subunit 11, Integrator complex subunit 9
Authors:Wu, Y, Tong, L.
Deposit date:2017-03-22
Release date:2017-04-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis for the interaction between Integrator subunits IntS9 and IntS11 and its functional importance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6IAM
DownloadVisualize
BU of 6iam by Molmil
Modulating Protein-Protein Interactions with Visible Light Peptide Backbone Switches
Descriptor: POTASSIUM ION, SER-ALA-ARG-ALA-XY5-VAL-HIS-LEU-ARG-LYS-SER-ALA, SODIUM ION, ...
Authors:Werel, L, Essen, L.-O.
Deposit date:2018-11-27
Release date:2019-02-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Modulating Protein-Protein Interactions with Visible-Light-Responsive Peptide Backbone Photoswitches.
Chembiochem, 20, 2019
2YOL
DownloadVisualize
BU of 2yol by Molmil
West Nile Virus NS2B-NS3 protease in complex with 3,4- dichlorophenylacetyl-Lys-Lys-GCMA
Descriptor: (S)-6-amino-N-((S)-6-amino-1-(((1r,4S)-4-guanidinocyclohexyl)methylamino)-1-oxohexan-2-yl)-2-(2-(3,4-dichlorophenyl)acetamido)hexanamide, CHLORIDE ION, NICKEL (II) ION, ...
Authors:Hammamy, M.Z, Haase, C, Hammami, M, Hilgenfeld, R, Steinmetzer, T.
Deposit date:2012-10-25
Release date:2013-03-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Development and Characterization of New Peptidomimetic Inhibitors of the West Nile Virus Ns2B-Ns3 Protease.
Chemmedchem, 8, 2013
5N10
DownloadVisualize
BU of 5n10 by Molmil
Cucurbit[8]uril and 14-3-3 based binary bivalent supramolecular-protein assembly platform
Descriptor: 14-3-3 protein beta/alpha, Cucurbit[8]uril, Estrogen receptor, ...
Authors:de Vink, P.J, Ottmann, C.
Deposit date:2017-02-04
Release date:2017-05-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Binary Bivalent Supramolecular Assembly Platform Based on Cucurbit[8]uril and Dimeric Adapter Protein 14-3-3.
Angew. Chem. Int. Ed. Engl., 56, 2017
1FBP
DownloadVisualize
BU of 1fbp by Molmil
CRYSTAL STRUCTURE OF FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH FRUCTOSE 6-PHOSPHATE, AMP, AND MAGNESIUM
Descriptor: 6-O-phosphono-beta-D-fructofuranose, ADENOSINE MONOPHOSPHATE, FRUCTOSE 1,6-BISPHOSPHATASE, ...
Authors:Ke, H, Zhang, Y, Lipscomb, W.N.
Deposit date:1990-05-31
Release date:1992-04-15
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of fructose-1,6-bisphosphatase complexed with fructose 6-phosphate, AMP, and magnesium.
Proc.Natl.Acad.Sci.USA, 87, 1990
5NO6
DownloadVisualize
BU of 5no6 by Molmil
TEAD4-HOXB13 complex bound to DNA
Descriptor: DNA, Homeobox protein Hox-B13, Transcriptional enhancer factor TEF-3
Authors:Morgunova, E, Jolma, A, Yin, Y, Popov, A, Taipale, J.
Deposit date:2017-04-11
Release date:2018-05-16
Last modified:2025-04-23
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:DNA-guided transcription factor interactions extend human gene regulatory code.
Nature, 2025

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon