PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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7QWB	CC-Type2-(Ue)4 Descriptor: CC-Type2-(Ue)4 Authors: Martin, F.J.O, Zieleniewski, F, Dawson, W.M, Woolfson, D.N. Deposit date: 2022-01-25 Release date: 2023-02-01 Method: X-RAY DIFFRACTION (1.64 Å) Cite: CC-Type2-(Ue)4 To Be Published
7QWA	CC-Type2-(UgUe)4 Descriptor: AMMONIUM ION, CC-Type2-(UgUe)4, SULFATE ION Authors: Martin, F.J.O, Zieleniewski, F, Dawson, W.M, Woolfson, D.N. Deposit date: 2022-01-25 Release date: 2023-02-01 Method: X-RAY DIFFRACTION (1.54 Å) Cite: CC-Type2-(UgUe)4 To Be Published
8ED3	Structure of a nanoparticle with icosahedral symmetry Descriptor: Designed I3-01 icosahedron Authors: McCarthy, S, Gonen, S. Deposit date: 2022-09-02 Release date: 2023-01-11 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Improved interface packing and design opportunities revealed by CryoEM analysis of a designed protein nanocage. Heliyon, 8, 2022
7R50	Crystal structure of GMP reductase from mycobacterium smegmatis in complex with GMP. Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Inosine-5-monophosphate dehydrogenase guaB1 Authors: Dolezal, M, Klima, M, Pichova, I. Deposit date: 2022-02-09 Release date: 2022-04-27 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The mycobacterial guaB1 gene encodes a guanosine 5'-monophosphate reductase with a cystathionine-beta-synthase domain. Febs J., 289, 2022
7RTZ	X-ray crystallographic structure of a beta-hairpin peptide derived from amyloid beta 14-40 Descriptor: Amyloid-beta protein 40, CHLORIDE ION Authors: Samdin, T.D, Kreutzer, A.G, Nowick, J.S. Deposit date: 2021-08-16 Release date: 2022-08-31 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A beta-Barrel-Like Tetramer Formed by a beta-Hairpin Derived From A beta Chem Sci, 2023
4XSE	Complex structure of thymidylate synthase from varicella zoster virus Descriptor: PHOSPHATE ION, Thymidylate synthase Authors: Hew, K. Deposit date: 2015-01-22 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure of the Varicella Zoster Virus Thymidylate Synthase Establishes Functional and Structural Similarities as the Human Enzyme and Potentiates Itself as a Target of Brivudine. Plos One, 10, 2015
8DPY	Synthetic Beta Sheet Macrocycle Stabilized by Hydrogen Bond Surrogates Descriptor: beta sheet-forming peptide with flexible linker Authors: Lu, B, Vecchioni, S, Nazzaro, A, Arora, P.S. Deposit date: 2022-07-18 Release date: 2023-05-24 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1 Å) Cite: Macrocyclic beta-Sheets Stabilized by Hydrogen Bond Surrogates. Angew.Chem.Int.Ed.Engl., 62, 2023
8EC9	Covalently stabilized triangular trimer derived from Abeta16-36 with p-iodo-phenylalanine Descriptor: ORN-LYS-LEU-VAL-PHI-PHE-ALA-GLU-ORN-CYS-ILE-ILE-SAR-CYS-MET-VAL Authors: Kreutzer, A.G, Yoo, S, Nowick, J.S. Deposit date: 2022-09-01 Release date: 2023-05-31 Last modified: 2023-06-07 Method: X-RAY DIFFRACTION (2.169 Å) Cite: Probing differences among A beta oligomers with two triangular trimers derived from A beta. Proc.Natl.Acad.Sci.USA, 120, 2023
4XSD	Complex structure of thymidylate synthase from varicella zoster virus with a dUMP Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Thymidylate synthase Authors: Hew, K. Deposit date: 2015-01-22 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of the Varicella Zoster Virus Thymidylate Synthase Establishes Functional and Structural Similarities as the Human Enzyme and Potentiates Itself as a Target of Brivudine. Plos One, 10, 2015
8ECA	Covalently stabilized triangular trimer derived from Abeta16-36 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, ORN-LYS-LEU-VAL-PHE-PHE-ALA-GLU-ORN-CYS-ILE-ILE-SAR-CYS-MET Authors: Kreutzer, A.G, Yoo, S, Nowick, J.S. Deposit date: 2022-09-01 Release date: 2023-05-31 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Probing differences among A beta oligomers with two triangular trimers derived from A beta. Proc.Natl.Acad.Sci.USA, 120, 2023
7RX5	Cryo-EM reconstruction of Form1-N2 nanotube (Form I like) Descriptor: F1-N2 nanotube Authors: Wang, F, Gnewou, O.M, Solemanifar, A, Xu, C, Egelman, E.H, Conticello, V.P. Deposit date: 2021-08-21 Release date: 2021-09-08 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM of Helical Polymers. Chem.Rev., 122, 2022
6SG9	Head domain of the mt-SSU assemblosome from Trypanosoma brucei Descriptor: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Saurer, M, Ramrath, D.J.F, Niemann, M, Calderaro, S, Prange, C, Mattei, S, Scaiola, A, Leitner, A, Bieri, P, Horn, E.K, Leibundgut, M, Boehringer, D, Schneider, A, Ban, N. Deposit date: 2019-08-03 Release date: 2019-09-18 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Science, 365, 2019
4XSC	Complex structure of thymidylate synthase from varicella zoster virus with a phosphorylated BVDU Descriptor: (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, PENTAETHYLENE GLYCOL, Thymidylate synthase Authors: Hew, K. Deposit date: 2015-01-22 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.901 Å) Cite: Structure of the Varicella Zoster Virus Thymidylate Synthase Establishes Functional and Structural Similarities as the Human Enzyme and Potentiates Itself as a Target of Brivudine. Plos One, 10, 2015
8ERZ	Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Aib10Gly11 turn Descriptor: Designed miniprotein oPPalpha: Aib10Gly11 turn Authors: Harmon, T.W, Horne, W.S. Deposit date: 2022-10-13 Release date: 2023-04-05 Last modified: 2023-06-28 Method: SOLUTION NMR Cite: Protein Backbone Alteration in Non-Hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability. Chembiochem, 24, 2023
8ERY	Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Asp10Asn11 turn Descriptor: Designed miniprotein oPPalpha: Asp10Asn11 turn Authors: Harmon, T.W, Horne, W.S. Deposit date: 2022-10-13 Release date: 2023-04-05 Method: SOLUTION NMR Cite: Protein Backbone Alteration in Non-hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability. Chembiochem, 2023
8ES2	Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: Aib10Asn11 turn Descriptor: Designed miniprotein oPPalpha: Aib10Asn11 turn Authors: Harmon, T.W, Horne, W.S. Deposit date: 2022-10-13 Release date: 2023-04-05 Last modified: 2023-06-28 Method: SOLUTION NMR Cite: Protein Backbone Alteration in Non-Hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability. Chembiochem, 24, 2023
8ES3	Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: DPro10Pro11 turn Descriptor: Designed miniprotein oPPalpha: DPro10Pro11 turn Authors: Harmon, T.W, Horne, W.S. Deposit date: 2022-10-13 Release date: 2023-04-05 Last modified: 2023-06-28 Method: SOLUTION NMR Cite: Protein Backbone Alteration in Non-Hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability. Chembiochem, 24, 2023
8ES1	Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: deltaOrn10-11 turn Descriptor: Designed miniprotein oPPalpha: deltaOrn10-11 turn Authors: Harmon, T.W, Horne, W.S. Deposit date: 2022-10-13 Release date: 2023-04-05 Last modified: 2023-06-28 Method: SOLUTION NMR Cite: Protein Backbone Alteration in Non-Hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability. Chembiochem, 24, 2023
8ES0	Backbone modifications in the inter-helix loop of designed miniprotein oPPalpha: DPro10Gly11 turn Descriptor: Designed miniprotein oPPalpha: DPro10Gly11 turn Authors: Harmon, T.W, Horne, W.S. Deposit date: 2022-10-13 Release date: 2023-04-05 Last modified: 2023-06-28 Method: SOLUTION NMR Cite: Protein Backbone Alteration in Non-Hairpin beta-Turns: Impacts on Tertiary Folded Structure and Folded Stability. Chembiochem, 24, 2023
3VDZ	Tailoring Encodable Lanthanide-Binding Tags as MRI Contrast Agents: xq-dSE3-Ubiquitin at 2.4 Angstroms Descriptor: GADOLINIUM ATOM, SULFATE ION, Ubiquitin-40S ribosomal protein S27a Authors: Daughtry, K.D, Martin, L.J, Surraju, A, Imperiali, B, Allen, K.N. Deposit date: 2012-01-06 Release date: 2012-11-28 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Tailoring encodable lanthanide-binding tags as MRI contrast agents. Chembiochem, 13, 2012
7QLF	Conformational ensemble of solnatide in solution Descriptor: Tumor necrosis factor Authors: Macias, M.J, Martin-Malpartida, P. Deposit date: 2021-12-20 Release date: 2022-06-08 Method: SOLUTION NMR Cite: Conformational ensemble of the TNF-derived peptide solnatide in solution. Comput Struct Biotechnol J, 20, 2022
8EZG	Monobody 12D1 bound to KRAS(G12D) Descriptor: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Hattori, T, Glasser, E, Akkapeddi, P, Ketavarapu, G, Teng, K.W, Koide, A, Koide, S. Deposit date: 2022-10-31 Release date: 2023-07-19 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Exploring switch II pocket conformation of KRAS(G12D) with mutant-selective monobody inhibitors. Proc.Natl.Acad.Sci.USA, 120, 2023
8F0M	Monobody 12D5 bound to KRAS(G12D) Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, ... Authors: Hattori, T, Glasser, E, Akkapeddi, P, Ketavarapu, G, Teng, K.W, Koide, A, Koide, S. Deposit date: 2022-11-03 Release date: 2023-07-19 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Exploring switch II pocket conformation of KRAS(G12D) with mutant-selective monobody inhibitors. Proc.Natl.Acad.Sci.USA, 120, 2023
3VDX	Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains Descriptor: Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1 Authors: Lai, Y.-T, Cascio, D, Yeates, T.O. Deposit date: 2012-01-06 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.002 Å) Cite: Structure of a 16-nm cage designed by using protein oligomers. Science, 336, 2012
8EJA	Computational design of potent and selective inhibitors of Bak and Bax Descriptor: aBAK Authors: Bera, A.K, Berger, S.A, Baker, D. Deposit date: 2022-09-16 Release date: 2024-03-20 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Computational design of potent and selective inhibitors of Bak and Bax To Be Published

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