PDB: 17019 resultsInfo pagesStatus searchChemie searchBIRD

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7XZO	Formate-tetrahydrofolate ligase in complex with ATP Descriptor: (R,R)-2,3-BUTANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Formate--tetrahydrofolate ligase, ... Authors: Fang, C.L, Zhang, Y. Deposit date: 2022-06-03 Release date: 2023-06-07 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.31 Å) Cite: Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol., 21, 2023
7XZN	Formate-tetrahydrofolate ligase from Peptostreptococcus anaerobius Descriptor: 1,2-ETHANEDIOL, Formate--tetrahydrofolate ligase, TRIS(HYDROXYETHYL)AMINOMETHANE Authors: Fang, C.L, Zhang, Y. Deposit date: 2022-06-03 Release date: 2023-06-07 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol., 21, 2023
7XZP	Formate-tetrahydrofolate ligase in complex with berberine Descriptor: BERBERINE, Formate--tetrahydrofolate ligase, PROLINE, ... Authors: Fang, C.L, Zhang, Y. Deposit date: 2022-06-03 Release date: 2023-06-07 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.56 Å) Cite: Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol., 21, 2023
6GJE	Structure of the Amnionless(20-357)-Cubilin(36-135) complex Descriptor: Cubilin, Protein amnionless Authors: Larsen, C, Etzerodt, A, Madsen, M, Skjoedt, K, Moestrup, S.K, Andersen, C.B.F. Deposit date: 2018-05-16 Release date: 2018-12-19 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural assembly of the megadalton-sized receptor for intestinal vitamin B12uptake and kidney protein reabsorption. Nat Commun, 9, 2018
7ZTH	Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the open conformation Descriptor: DNA (48-MER), PLP-dependent aminotransferase family protein Authors: Freda, I, Montemiglio, L.C, Tramonti, A, Contestabile, R, Vallone, B, Exertier, C, Savino, C, Chaves Sanjuan, A, Bolognesi, M. Deposit date: 2022-05-10 Release date: 2023-07-05 Last modified: 2024-01-17 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural insights into the DNA recognition mechanism by the bacterial transcription factor PdxR. Nucleic Acids Res., 51, 2023
7ZN5	Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the closed conformation, C2 symmetry. Descriptor: DNA (48-MER), PLP-dependent aminotransferase family protein Authors: Freda, I, Montemiglio, L.C, Tramonti, A, Contestabile, R, Vallone, B, Exertier, C, Savino, C, Chaves Sanjuan, A, Bolognesi, M. Deposit date: 2022-04-20 Release date: 2023-07-05 Last modified: 2024-01-17 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural insights into the DNA recognition mechanism by the bacterial transcription factor PdxR. Nucleic Acids Res., 51, 2023
7ZPA	Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the closed conformation, C1 symmetry Descriptor: DNA (48-MER), PLP-dependent aminotransferase family protein Authors: Freda, I, Montemiglio, L.C, Tramonti, A, Contestabile, R, Vallone, B, Exertier, C, Savino, C, Chaves Sanjuan, A, Bolognesi, M. Deposit date: 2022-04-27 Release date: 2023-07-05 Last modified: 2024-01-17 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural insights into the DNA recognition mechanism by the bacterial transcription factor PdxR. Nucleic Acids Res., 51, 2023
7ZLA	Cryo-EM structure of holo-PdxR from Bacillus clausii bound to its target DNA in the half-closed conformation Descriptor: DNA (48-MER), PLP-dependent aminotransferase family protein Authors: Freda, I, Montemiglio, L.C, Tramonti, A, Contestabile, R, Vallone, B, Savino, C, Exertier, C, Bolognesi, M, Chaves Sanjuan, A. Deposit date: 2022-04-14 Release date: 2023-07-05 Last modified: 2024-01-17 Method: ELECTRON MICROSCOPY (3.99 Å) Cite: Structural insights into the DNA recognition mechanism by the bacterial transcription factor PdxR. Nucleic Acids Res., 51, 2023
8BTR	Giardia Ribosome in PRE-T Hybrid State (D2) Descriptor: 5.8S rRNA, 5S rRNA, Large Subunit rRNA, ... Authors: Majumdar, S, Emmerich, A.G, Sanyal, S. Deposit date: 2022-11-29 Release date: 2023-03-22 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
8BTD	Giardia Ribosome in PRE-T Hybrid State (D1) Descriptor: 5.8S rRNA, 5S rRNA, Large Subunit rRNA, ... Authors: Majumdar, S, Emmerich, A.G, Sanyal, S. Deposit date: 2022-11-28 Release date: 2023-03-22 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (4.9 Å) Cite: Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
8BR8	Giardia ribosome in POST-T state (A1) Descriptor: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... Authors: Majumdar, S, Emmerich, A.G, Sanyal, S. Deposit date: 2022-11-22 Release date: 2023-03-15 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
8BRM	Giardia ribosome in POST-T state, no E-site tRNA (A6) Descriptor: 5.8S rRNA, 5S rRNA, Large Subunit rRNA, ... Authors: Majumdar, S, Emmerich, A.G, Sanyal, S. Deposit date: 2022-11-23 Release date: 2023-03-15 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (3.33 Å) Cite: Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
6HGL	Crystal structure of Alpha1-antichymotrypsin variant NewBG-III: a new binding globulin in complex with testosterone Descriptor: Alpha-1-antichymotrypsin, TESTOSTERONE Authors: Schmidt, K, Muller, Y.A. Deposit date: 2018-08-23 Release date: 2019-05-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.92 Å) Cite: NewBG: A surrogate corticosteroid-binding globulin with an unprecedentedly high ligand release efficacy. J.Struct.Biol., 207, 2019
7VJU	Crystal Structure of terephthalate dioxygenase from Comamonas testosteroni KF1 Descriptor: Aromatic-ring-hydroxylating dioxygenase beta subunit, DI(HYDROXYETHYL)ETHER, FE (II) ION, ... Authors: Mahto, J.K, Kumar, P. Deposit date: 2021-09-28 Release date: 2022-04-13 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Structural Insights into Dihydroxylation of Terephthalate, a Product of Polyethylene Terephthalate Degradation. J.Bacteriol., 204, 2022
1HXH	COMAMONAS TESTOSTERONI 3BETA/17BETA HYDROXYSTEROID DEHYDROGENASE Descriptor: 3BETA/17BETA-HYDROXYSTEROID DEHYDROGENASE Authors: Benach, J, Filling, C, Oppermann, U.C.T, Roversi, P, Bricogne, G, Berndt, K.D, Jornvall, H, Ladenstein, R. Deposit date: 2001-01-15 Release date: 2002-12-25 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.22 Å) Cite: Structure of Bacterial 3beta/17beta-Hydroxysteroid Dehydrogenase at 1.2 A Resolution: A Model for Multiple Steroid Recognition Biochemistry, 41, 2002
6ZE0	Orthorhombic crystal structure of the bulky-bulky ketone specific alcohol dehydrogenase from Comamonas testosteroni Descriptor: alcohol dehydrogenase Authors: Toelzer, C, Niefind, K. Deposit date: 2020-06-15 Release date: 2020-11-11 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Expanding the Application Range of Microbial Oxidoreductases by an Alcohol Dehydrogenase from Comamonas testosteroni with a Broad Substrate Spectrum and pH Profile Catalysts, 2020
6ZDZ	Tetragonal crystal structure of the bulky-bulky ketone specific alcohol dehydrogenase from Comamonas testosteroni Descriptor: SULFATE ION, alcohol dehydrogenase Authors: Toelzer, C, Niefind, K. Deposit date: 2020-06-15 Release date: 2020-11-11 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.153 Å) Cite: Expanding the Application Range of Microbial Oxidoreductases by an Alcohol Dehydrogenase from Comamonas testosteroni with a Broad Substrate Spectrum and pH Profile Catalysts, 2020
1OCV	the F116W mutant structure of ketosteroid isomerase from Comamonas testosteroni Descriptor: STEROID DELTA-ISOMERASE Authors: Yun, Y.S, Lee, T.-H, Shin, S. Deposit date: 2003-02-11 Release date: 2003-07-24 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Origin of the Different Ph Activity Profile in Two Homologous Ketosteroid Isomerases J.Biol.Chem., 278, 2003
6LY4	The crystal structure of the BM3 mutant LG-23 in complex with testosterone Descriptor: 1,2-ETHANEDIOL, Bifunctional cytochrome P450/NADPH--P450 reductase, IMIDAZOLE, ... Authors: Peng, Y, Chen, J, Zhou, J, Li, A, ReetZ, M.T. Deposit date: 2020-02-13 Release date: 2020-04-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Regio- and Stereoselective Steroid Hydroxylation at C7 by Cytochrome P450 Monooxygenase Mutants. Angew.Chem.Int.Ed.Engl., 59, 2020
9EQG	CryoEM structure of human full-length alpha1beta3gamma2L GABA(A)R in complex with GABA and puerarin Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kasaragod, V.B, Aricescu, A.R. Deposit date: 2024-03-21 Release date: 2024-09-18 Last modified: 2024-09-25 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: A brain-to-gut signal controls intestinal fat absorption. Nature, 2024
7KGY	Beta-glucuronidase from Faecalibacterium prausnitzii bound to the inhibitor UNC10201652-glucuronide Descriptor: 8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(morpholin-4-yl)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3 -c]isoquinoline, Beta-glucuronidase, GLYCEROL Authors: Simpson, J.B, Redinbo, M.R. Deposit date: 2020-10-19 Release date: 2021-11-10 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Microbial enzymes induce colitis by reactivating triclosan in the mouse gastrointestinal tract. Nat Commun, 13, 2022
7KGZ	FMN-binding beta-glucuronidase from Roseburia hominis Descriptor: Beta-glucuronidase, CALCIUM ION, FLAVIN MONONUCLEOTIDE, ... Authors: Walker, M.E, Redinbo, M.R. Deposit date: 2020-10-19 Release date: 2021-11-10 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Microbial enzymes induce colitis by reactivating triclosan in the mouse gastrointestinal tract. Nat Commun, 13, 2022
7WZD	Crystal Structure of cis-4,5-dihydrodiol phthalate dehydrogenase from Comamonas testosteroni KF1 Descriptor: 4,5-dihydroxyphthalate dehydrogenase, GLYCEROL Authors: Sharma, M, Mahto, J.K, Kumar, P. Deposit date: 2022-02-17 Release date: 2022-09-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Conformational flexibility enables catalysis of phthalate cis-4,5-dihydrodiol dehydrogenase. Arch.Biochem.Biophys., 727, 2022
7Y98	Crystal structure of CYP109B4 from Bacillus Sonorensis in complex with Testosterone Descriptor: Cytochrome P450 monooxygenase YjiB, PROTOPORPHYRIN IX CONTAINING FE, TESTOSTERONE Authors: Shen, P.P, Huang, J.-W, Li, X, Liu, W.D, Chen, C.-C, Guo, R.-T. Deposit date: 2022-06-24 Release date: 2023-05-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Rationally Controlling Selective Steroid Hydroxylation via Scaffold Sampling of a P450 Family Acs Catalysis, 13, 2023
3AKM	X-ray structure of iFABP from human and rat with bound fluorescent fatty acid analogue Descriptor: 11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid, Fatty acid-binding protein, intestinal, ... Authors: Wielens, J, Laguerre, A.J.K, Parker, M.W, Scanlon, M.J. Deposit date: 2010-07-14 Release date: 2011-07-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structures of human and rat intestinal fatty acid binding proteins in complex with 11-(Dansylamino)undecanoic acid To be Published

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