Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5U4X
DownloadVisualize
BU of 5u4x by Molmil
Coactivator-associated arginine methyltransferase 1 with TP-064
Descriptor: Histone-arginine methyltransferase CARM1, N-methyl-N-[(2-{1-[2-(methylamino)ethyl]piperidin-4-yl}pyridin-4-yl)methyl]-3-phenoxybenzamide, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:DONG, A, ZENG, H, Saikatendu, K.S, STONE, H, WALKER, J.R, Seitova, A, Hutchinson, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, BROWN, P.J, WU, H, Structural Genomics Consortium (SGC)
Deposit date:2016-12-06
Release date:2016-12-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:TP-064, a potent and selective small molecule inhibitor of PRMT4 for multiple myeloma.
Oncotarget, 9, 2018
1LGA
DownloadVisualize
BU of 1lga by Molmil
CRYSTALLOGRAPHIC REFINEMENT OF LIGNIN PEROXIDASE AT 2 ANGSTROMS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, LIGNIN PEROXIDASE, ...
Authors:Poulos, T.L, Edwards, S.L, Wariishi, H, Gold, M.H.
Deposit date:1992-12-08
Release date:1993-10-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystallographic refinement of lignin peroxidase at 2 A.
J.Biol.Chem., 268, 1993
7MSL
DownloadVisualize
BU of 7msl by Molmil
Structure of anti-CRISPR AcrIIC4 from Haemophilus parainfluenzae
Descriptor: AcrIIC4, IODIDE ION
Authors:Pan, C, Maxwell, K.L, Moraes, T.F.
Deposit date:2021-05-11
Release date:2022-03-23
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural and Mechanistic Insight into CRISPR-Cas9 Inhibition by Anti-CRISPR Protein AcrIIC4 Hpa.
J.Mol.Biol., 434, 2022
8TUK
DownloadVisualize
BU of 8tuk by Molmil
Alvinella ASCC1 KH and Phosphodiesterase/Ligase Domain
Descriptor: 1,2-ETHANEDIOL, Activating signal cointegrator 1 complex subunit 1, IMIDAZOLE
Authors:Tsutakawa, S.E, Tainer, J.A, Arvai, A.S, Chinnam, N.B.
Deposit date:2023-08-16
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase.
J.Biol.Chem., 300, 2024
3T2E
DownloadVisualize
BU of 3t2e by Molmil
Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, F6P-bound form
Descriptor: FRUCTOSE -6-PHOSPHATE, Fructose-1,6-bisphosphate aldolase/phosphatase, MAGNESIUM ION
Authors:Du, J, Say, R, Lue, W, Fuchs, G, Einsle, O.
Deposit date:2011-07-22
Release date:2011-10-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Active-site remodelling in the bifunctional fructose-1,6-bisphosphate aldolase/phosphatase.
Nature, 478, 2011
3Q2Q
DownloadVisualize
BU of 3q2q by Molmil
Crystal structure of geranylgeranyl pyrophosphate synthase from Corynebacterium glutamicum complexed with calcium and isoprenyl diphosphate
Descriptor: CALCIUM ION, DIMETHYLALLYL DIPHOSPHATE, GLYCEROL, ...
Authors:Patskovsky, Y, Toro, R, Rutter, M, Sauder, J.M, Poulter, C.D, Gerlt, J.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-12-20
Release date:2011-01-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily.
Proc.Natl.Acad.Sci.USA, 110, 2013
6V16
DownloadVisualize
BU of 6v16 by Molmil
Crystal structure of the bromodomain of human BRD7 bound to TP472
Descriptor: 1,2-ETHANEDIOL, 3-(6-acetylpyrrolo[1,2-a]pyrimidin-8-yl)-N-cyclopropyl-4-methylbenzamide, Bromodomain-containing protein 7, ...
Authors:Karim, M.R, Chan, A, Schonbrunn, E.
Deposit date:2019-11-19
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis of Inhibitor Selectivity in the BRD7/9 Subfamily of Bromodomains.
J.Med.Chem., 63, 2020
1QWM
DownloadVisualize
BU of 1qwm by Molmil
Structure of Helicobacter pylori catalase with formic acid bound
Descriptor: AZIDE ION, FORMIC ACID, KatA catalase, ...
Authors:Loewen, P.C, Carpena, X, Perez-Luque, R, Rovira, C, Haas, R, Odenbreit, S, Nicholls, P, Fita, I.
Deposit date:2003-09-02
Release date:2004-03-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of Helicobacter pylori Catalase, with and without Formic Acid Bound, at 1.6 A Resolution
Biochemistry, 43, 2004
7M66
DownloadVisualize
BU of 7m66 by Molmil
Targeting Enterococcus faecalis HMG-CoA reductase with a novel non-statin inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Bose, S, Steussy, C.N.
Deposit date:2021-03-25
Release date:2022-09-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Targeting Enterococcus faecalis HMG-CoA reductase with a non-statin inhibitor.
Commun Biol, 6, 2023
3CKU
DownloadVisualize
BU of 3cku by Molmil
Urate oxidase from aspergillus flavus complexed with its inhibitor 8-azaxanthin and chloride
Descriptor: 8-AZAXANTHINE, CHLORIDE ION, SODIUM ION, ...
Authors:Colloc'h, N, Prange, T.
Deposit date:2008-03-17
Release date:2008-10-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Oxygen pressurized X-ray crystallography: probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism.
Biophys.J., 95, 2008
4BD0
DownloadVisualize
BU of 4bd0 by Molmil
X-ray structure of a perdeuterated Toho-1 R274N R276N double mutant Beta-lactamase in complex with a fully deuterated boronic acid (BZB)
Descriptor: BENZO[B]THIOPHENE-2-BORONIC ACID, BETA-LACTAMASE TOHO-1, SULFATE ION
Authors:Tomanicek, S.J, Weiss, K.L, Standaert, R.F, Ostermann, A, Schrader, T.E, Ng, J.D, Coates, L.
Deposit date:2012-10-04
Release date:2013-01-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.207 Å)
Cite:Neutron and X-Ray Crystal Structures of a Perdeuterated Enzyme Inhibitor Complex Reveal the Catalytic Proton Network of the Toho-1 Beta-Lactamase for the Acylation Reaction.
J.Biol.Chem., 288, 2013
4BFB
DownloadVisualize
BU of 4bfb by Molmil
BACE2 XAPERONE COMPLEX
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-SECRETASE 2, XA4813
Authors:Banner, D.W, Kuglstatter, A, Benz, J, Stihle, M, Ruf, A.
Deposit date:2013-03-18
Release date:2013-05-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Mapping the Conformational Space Accessible to Bace2 Using Surface Mutants and Co-Crystals with Fab-Fragments, Fynomers, and Xaperones
Acta Crystallogr.,Sect.D, 69, 2013
6VGV
DownloadVisualize
BU of 6vgv by Molmil
Crystal structure of VidaL intein
Descriptor: GLYCEROL, VidaL
Authors:Burton, A.J, Haugbro, M, Parisi, E, Muir, T.W.
Deposit date:2020-01-09
Release date:2020-05-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Live-cell protein engineering with an ultra-short split intein.
Proc.Natl.Acad.Sci.USA, 117, 2020
3BPZ
DownloadVisualize
BU of 3bpz by Molmil
HCN2-I 443-460 E502K in the presence of cAMP
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
Authors:Craven, K.B, Olivier, N.B, Zagotta, W.N.
Deposit date:2007-12-19
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:C-terminal movement during gating in cyclic nucleotide-modulated channels.
J.Biol.Chem., 283, 2008
6L2P
DownloadVisualize
BU of 6l2p by Molmil
Threonyl-tRNA synthetase from Salmonella enterica in the apo form
Descriptor: Threonine--tRNA ligase, ZINC ION
Authors:Guo, J, Chen, B, Zhou, H.
Deposit date:2019-10-05
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of novel tRNA-amino acid dual-site inhibitors against threonyl-tRNA synthetase by fragment-based target hopping.
Eur.J.Med.Chem., 187, 2019
8W5A
DownloadVisualize
BU of 8w5a by Molmil
Crystal structure of the RING domain of human XIAP
Descriptor: CALCIUM ION, E3 ubiquitin-protein ligase XIAP, ZINC ION
Authors:Zhang, Q, Sun, H, Hu, X, Wang, M.
Deposit date:2023-08-25
Release date:2023-09-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of the RING domain of human XIAP
To Be Published
8W59
DownloadVisualize
BU of 8w59 by Molmil
Crystal structure of the RING domain of human XIAP treated with arsenic trioxide
Descriptor: CALCIUM ION, E3 ubiquitin-protein ligase XIAP, ZINC ION
Authors:Zhang, Q, Sun, H, Hu, X, Wang, M.
Deposit date:2023-08-25
Release date:2023-09-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.339 Å)
Cite:Crystal structure of the RING domain of human XIAP
To Be Published
1NC1
DownloadVisualize
BU of 1nc1 by Molmil
Crystal structure of E. coli MTA/AdoHcy nucleosidase complexed with 5'-methylthiotubercidin (MTH)
Descriptor: 2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-METHYLSULFANYLMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, MTA/SAH nucleosidase
Authors:Lee, J.E, Cornell, K.A, Riscoe, M.K, Howell, P.L.
Deposit date:2002-12-04
Release date:2003-11-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Escherichia coli 5'-methylthioadenosine/ S-adenosylhomocysteine nucleosidase inhibitor complexes provide insight into the conformational changes required for substrate binding and catalysis.
J.Biol.Chem., 278, 2003
1RE3
DownloadVisualize
BU of 1re3 by Molmil
Crystal Structure of Fragment D of BbetaD398A Fibrinogen with the Peptide Ligand Gly-His-Arg-Pro-Amide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrinogen alpha/alpha-E chain, ...
Authors:Kostelansky, M.S, Betts, L, Gorkun, O.V, Lord, S.T.
Deposit date:2003-11-06
Release date:2004-05-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:BbetaGlu397 and BbetaAsp398 but not BbetaAsp432 are required for "B:b" interactions.
Biochemistry, 43, 2004
1DYJ
DownloadVisualize
BU of 1dyj by Molmil
ISOMORPHOUS CRYSTAL STRUCTURES OF ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE COMPLEXED WITH FOLATE, 5-DEAZAFOLATE AND 5,10-DIDEAZATETRAHYDROFOLATE: MECHANISTIC IMPLICATIONS
Descriptor: 5,10-DIDEAZATETRAHYDROFOLIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Reyes, V.M, Kraut, J.
Deposit date:1994-10-26
Release date:1995-06-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Isomorphous crystal structures of Escherichia coli dihydrofolate reductase complexed with folate, 5-deazafolate, and 5,10-dideazatetrahydrofolate: mechanistic implications.
Biochemistry, 34, 1995
5T30
DownloadVisualize
BU of 5t30 by Molmil
Human MnSOD-azide complex
Descriptor: AZIDE ION, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Azadmanesh, J, Trickel, S.R, Kolar, C.H, Lovelace, J.J, Borgstahl, G.E.O.
Deposit date:2016-08-24
Release date:2017-05-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Substrate-analog binding and electrostatic surfaces of human manganese superoxide dismutase.
J. Struct. Biol., 199, 2017
3Q6V
DownloadVisualize
BU of 3q6v by Molmil
Crystal Structure of Serratia fonticola Sfh-I: glycerol complex
Descriptor: Beta-lactamase, GLYCEROL, ZINC ION
Authors:Fonseca, F, Saavedra, M.J, Correia, A, Spencer, J.
Deposit date:2011-01-03
Release date:2011-07-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Crystal structure of Serratia fonticola Sfh-I: activation of the nucleophile in mono-zinc metallo-beta-lactamases.
J.Mol.Biol., 411, 2011
1X3X
DownloadVisualize
BU of 1x3x by Molmil
Crystal Structure of Cytochrome b5 from Ascaris suum
Descriptor: Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Yokota, T, Nakajima, Y, Yamakura, F, Sugio, S, Hashimoto, M, Takamiya, S, Aoki, T.
Deposit date:2005-05-11
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unique structure of Ascaris suum b5-type cytochrome: an additional alpha-helix and positively charged residues on the surface domain interact with redox partners
Biochem.J., 394, 2006
1LFK
DownloadVisualize
BU of 1lfk by Molmil
Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis
Descriptor: P450 monooxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Pylypenko, O, Zerbe, K, Vitali, F, Zhang, W, Vrijbloed, J.W, Robinson, J.A, Schlichting, I.
Deposit date:2002-04-11
Release date:2002-12-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction during Vancomycin Biosynthesis.
J.Biol.Chem., 277, 2002
2J71
DownloadVisualize
BU of 2j71 by Molmil
alpha-glucan recognition by a family 41 carbohydrate-binding module from Thermotoga maritima pullulanase PulA
Descriptor: PULLULANASE
Authors:Lammerts van Bueren, A, Boraston, A.B.
Deposit date:2006-10-05
Release date:2006-10-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:The Structural Basis of Alpha-Glucan Recognition by a Family 41 Carbohydrate-Binding Module from Thermotoga Maritima
J.Mol.Biol., 365, 2007

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon