1BPX
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![BU of 1bpx by Molmil](/molmil-images/mine/1bpx) | DNA POLYMERASE BETA/DNA COMPLEX | Descriptor: | DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ... | Authors: | Sawaya, M.R, Prasad, R, Wilson, S.H, Kraut, J, Pelletier, H. | Deposit date: | 1997-04-11 | Release date: | 1997-06-16 | Last modified: | 2023-08-02 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism. Biochemistry, 36, 1997
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2OFK
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![BU of 2ofk by Molmil](/molmil-images/mine/2ofk) | Crystal Structure of 3-methyladenine DNA glycosylase I (TAG) | Descriptor: | 3-methyladenine DNA glycosylase I, constitutive, TRIETHYLENE GLYCOL, ... | Authors: | Metz, A.H, Hollis, T, Eichman, B.F. | Deposit date: | 2007-01-03 | Release date: | 2007-05-15 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). Embo J., 26, 2007
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8Q9R
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![BU of 8q9r by Molmil](/molmil-images/mine/8q9r) | Crystal structure of MADS-box/MEF2D N-terminal domain bound to dsDNA and HDAC9 deacetylase binding motif | Descriptor: | Histone deacetylase 9 (HDAC9) binding motif peptide: EVKQKLQEFLLSKS, MADS box dsDNA: AACTATTTATAAGA, MADS box dsDNA: TCTTATAAATAGT, ... | Authors: | Chinellato, M, Carli, A, Perin, S, Mazzoccato, Y, Di Giorgio, E, Brancolini, C, Angelini, A, Cendron, L. | Deposit date: | 2023-08-20 | Release date: | 2024-04-17 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Folding of Class IIa HDAC Derived Peptides into alpha-helices Upon Binding to Myocyte Enhancer Factor-2 in Complex with DNA. J.Mol.Biol., 436, 2024
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8Q9Q
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![BU of 8q9q by Molmil](/molmil-images/mine/8q9q) | Crystal Structure of the MADS-box/MEF2 Domain of MEF2D bound to dsDNA and HDAC7 deacetylase binding motif | Descriptor: | HDAC7 (histone deacetylase 7) binding motif peptide: GLY-VAL-VAL-LYS-GLN-LYS-LEU-ALA-GLU-VAL-ILE-LEU-LYS-LYS-GLN, MADS box dsDNA: AACTATTTATAAGA, MADS box dsDNA: TCTTATAAATAGTT, ... | Authors: | Chinellato, M, Carli, A, Perin, S, Mazzocato, Y, Biondi, B, Di Giorgio, E, Brancolini, C, Angelini, A, Cendron, L. | Deposit date: | 2023-08-20 | Release date: | 2024-04-17 | Method: | X-RAY DIFFRACTION (2.11 Å) | Cite: | Folding of Class IIa HDAC Derived Peptides into alpha-helices Upon Binding to Myocyte Enhancer Factor-2 in Complex with DNA. J.Mol.Biol., 436, 2024
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110D
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![BU of 110d by Molmil](/molmil-images/mine/110d) | ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL | Descriptor: | DAUNOMYCIN, DNA (5'-D(*CP*GP*GP*CP*CP*G)-3') | Authors: | Leonard, G.A, Hambley, T.W, McAuley-Hecht, K, Brown, T, Hunter, W.N. | Deposit date: | 1993-01-21 | Release date: | 1993-04-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes. Acta Crystallogr.,Sect.D, 49, 1993
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1A74
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![BU of 1a74 by Molmil](/molmil-images/mine/1a74) | I-PPOL HOMING ENDONUCLEASE/DNA COMPLEX | Descriptor: | DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*A P*GP*TP*CP*A)-3'), INTRON-ENCODED ENDONUCLEASE I-PPOI, ZINC ION | Authors: | Jurica, B.L, Flick, K.E, Monnat Junior, R.J, Stoddard, M.S. | Deposit date: | 1998-03-19 | Release date: | 1998-06-22 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI. Nature, 394, 1998
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1A73
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![BU of 1a73 by Molmil](/molmil-images/mine/1a73) | INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNA | Descriptor: | DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), INTRON 3 (I-PPO) ENCODED ENDONUCLEASE, ... | Authors: | Flick, K.E, Monnat Junior, R.J, Stoddard, B.L. | Deposit date: | 1998-03-19 | Release date: | 1998-10-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI. Nature, 394, 1998
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154D
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![BU of 154d by Molmil](/molmil-images/mine/154d) | DNA DISTORTION IN BIS-INTERCALATED COMPLEXES | Descriptor: | BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6-DIAMINE, DNA (5'-D(*(CBR)P*GP*CP*G)-3') | Authors: | Peek, M.E, Lipscomb, L.A, Bertrand, J.A, Gao, Q, Roques, B.P, Garbay-Jaureguiberry, C, Williams, L.D. | Deposit date: | 1993-12-14 | Release date: | 1994-08-31 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | DNA distortion in bis-intercalated complexes. Biochemistry, 33, 1994
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1DA0
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![BU of 1da0 by Molmil](/molmil-images/mine/1da0) | DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) COMPLEXED WITH DAUNOMYCIN | Descriptor: | DAUNOMYCIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') | Authors: | Moore, M.H, Hunter, W.N, Langlois D'Estaintot, B, Kennard, O. | Deposit date: | 1992-10-17 | Release date: | 1993-07-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | DNA-drug interactions. The crystal structure of d(CGATCG) complexed with daunomycin. J.Mol.Biol., 206, 1989
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3RR5
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![BU of 3rr5 by Molmil](/molmil-images/mine/3rr5) | DNA ligase from the archaeon Thermococcus sp. 1519 | Descriptor: | DNA ligase, MAGNESIUM ION | Authors: | Petrova, T, Bezsudnova, E.Y, Boyko, K.M, Mardanov, A.V, Popov, V.O, Polyakov, K.M, Ravin, N.V, Shabalin, I.G, Skryabin, K.G, Stekhanova, T.N, Kovalchuk, M.V. | Deposit date: | 2011-04-29 | Release date: | 2012-04-11 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (3.018 Å) | Cite: | ATP-dependent DNA ligase from Thermococcus sp. 1519 displays a new arrangement of the OB-fold domain. Acta Crystallogr.,Sect.F, 68, 2012
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1EMH
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![BU of 1emh by Molmil](/molmil-images/mine/1emh) | CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA | Descriptor: | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3'), URACIL-DNA GLYCOSYLASE | Authors: | Parikh, S.S, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A. | Deposit date: | 2000-03-16 | Release date: | 2000-05-16 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. Proc.Natl.Acad.Sci.USA, 97, 2000
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5FHL
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![BU of 5fhl by Molmil](/molmil-images/mine/5fhl) | |
459D
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![BU of 459d by Molmil](/molmil-images/mine/459d) | DNA MINOR-GROOVE RECOGNITION OF A TRIS-BENZIMIDAZOLE DRUG | Descriptor: | 2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)-2,5',2',5''-TRI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*(CBR)P*AP*TP*AP*TP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*AP*TP*GP*CP*G)-3') | Authors: | Aymami, J, Nunn, C.M, Neidle, S. | Deposit date: | 1999-03-10 | Release date: | 1999-06-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | DNA minor groove recognition of a non-self-complementary AT-rich sequence by a tris-benzimidazole ligand. Nucleic Acids Res., 27, 1999
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1D26
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![BU of 1d26 by Molmil](/molmil-images/mine/1d26) | |
1DE8
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![BU of 1de8 by Molmil](/molmil-images/mine/1de8) | HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE-1 (APE1) BOUND TO ABASIC DNA | Descriptor: | DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*(3DR)P*GP*AP*TP*CP*G)-3'), MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE | Authors: | Mol, C.D, Izumi, T, Mitra, S, Tainer, J.A. | Deposit date: | 1999-11-13 | Release date: | 2000-02-02 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.95 Å) | Cite: | DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected Nature, 403, 2000
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2M2C
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![BU of 2m2c by Molmil](/molmil-images/mine/2m2c) | Solution structure of Duplex DNA | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*TP*AP*GP*CP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*CP*AP*TP*GP*CP*TP*AP*CP*GP*CP*G)-3') | Authors: | Ghosh, A, Kar, R.K, Chatterjee, S, Bhunia, A. | Deposit date: | 2012-12-18 | Release date: | 2013-01-23 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Indolicidin targets duplex DNA: structural and mechanistic insight through a combination of spectroscopy and microscopy. Chemmedchem, 9, 2014
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4J80
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![BU of 4j80 by Molmil](/molmil-images/mine/4j80) | Thermus thermophilus DnaJ | Descriptor: | Chaperone protein DnaJ 2 | Authors: | Barends, T.R.M, Brosi, R.W, Steinmetz, A, Scherer, A, Hartmann, E, Eschenbach, J, Lorenz, T, Seidel, R, Shoeman, R, Zimmermann, S, Bittl, R, Schlichting, I, Reinstein, J. | Deposit date: | 2013-02-14 | Release date: | 2013-07-31 | Last modified: | 2013-10-09 | Method: | EPR (2.9 Å), X-RAY DIFFRACTION | Cite: | Combining crystallography and EPR: crystal and solution structures of the multidomain cochaperone DnaJ. Acta Crystallogr.,Sect.D, 69, 2013
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4J7Z
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![BU of 4j7z by Molmil](/molmil-images/mine/4j7z) | Thermus thermophilus DNAJ J- and G/F-DOMAINS | Descriptor: | Chaperone protein DnaJ 2, GLYCEROL | Authors: | Barends, T.R.M, Brosi, R.W, Steinmetz, A, Scherer, A, Hartmann, E, Eschenbach, J, Lorenz, T, Seidel, R, Shoeman, R, Zimmermann, S, Bittl, R, Schlichting, I, Reinstein, J. | Deposit date: | 2013-02-14 | Release date: | 2013-07-31 | Last modified: | 2024-02-28 | Method: | EPR (1.64 Å), X-RAY DIFFRACTION | Cite: | Combining crystallography and EPR: crystal and solution structures of the multidomain cochaperone DnaJ. Acta Crystallogr.,Sect.D, 69, 2013
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3DPO
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![BU of 3dpo by Molmil](/molmil-images/mine/3dpo) | |
3DPP
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![BU of 3dpp by Molmil](/molmil-images/mine/3dpp) | |
3DPQ
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![BU of 3dpq by Molmil](/molmil-images/mine/3dpq) | |
175D
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![BU of 175d by Molmil](/molmil-images/mine/175d) | |
2K7R
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![BU of 2k7r by Molmil](/molmil-images/mine/2k7r) | N-terminal domain of the Bacillus subtilis helicase-loading protein DnaI | Descriptor: | Primosomal protein dnaI, ZINC ION | Authors: | Loscha, K.V, Jaudzems, K, Ioannou, C, Su, X.C, Hill, F.R, Otting, G, Dixon, N.E, Liepinsh, E. | Deposit date: | 2008-08-19 | Release date: | 2009-03-03 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | A novel zinc-binding fold in the helicase interaction domain of the Bacillus subtilis DnaI helicase loader Nucleic Acids Res., 37, 2009
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2LZW
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![BU of 2lzw by Molmil](/molmil-images/mine/2lzw) | DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link | Descriptor: | DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), HEPTANE | Authors: | Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. | Deposit date: | 2012-10-11 | Release date: | 2013-10-16 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase. Org.Biomol.Chem., 15, 2017
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2LZV
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![BU of 2lzv by Molmil](/molmil-images/mine/2lzv) | DNA duplex containing mispair-aligned O4U-heptylene-O4U interstrand cross-link | Descriptor: | DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), HEPTANE | Authors: | Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. | Deposit date: | 2012-10-11 | Release date: | 2013-10-16 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase. Org.Biomol.Chem., 15, 2017
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