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PDB: 1507 results

2N2K
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BU of 2n2k by Molmil
Ensemble structure of the closed state of Lys63-linked diubiquitin in the absence of a ligand
Descriptor: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ubiquitin
Authors:Liu, Z, Gong, Z, Tang, C.
Deposit date:2015-05-10
Release date:2015-07-08
Last modified:2015-09-23
Method:SOLUTION NMR
Cite:Lys63-linked ubiquitin chain adopts multiple conformational states for specific target recognition.
Elife, 4, 2015
2N13
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BU of 2n13 by Molmil
Complex structure of MyUb (1080-1122) of human Myosin VI with K63-diUb
Descriptor: Ubiquitin, Unconventional myosin-VI
Authors:He, F, Walters, K.
Deposit date:2015-03-20
Release date:2016-03-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains.
Cell Rep, 14, 2016
2JF5
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BU of 2jf5 by Molmil
crystal structure of Lys63-linked di-ubiquitin
Descriptor: CADMIUM ION, CHLORIDE ION, COBALT (II) ION, ...
Authors:Komander, D, Odenwaelder, P, Barford, D.
Deposit date:2007-01-26
Release date:2008-02-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular Discrimination of Structurally Equivalent Lys 63-Linked and Linear Polyubiquitin Chains.
Embo Rep., 10, 2009
2MSG
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BU of 2msg by Molmil
Solid-state NMR structure of ubiquitin
Descriptor: Ubiquitin
Authors:Lakomek, N, Habenstein, B, Loquet, A, Shi, C, Giller, K, Wolff, S, Becker, S, Fasshuber, H, Lange, A.
Deposit date:2014-08-04
Release date:2015-02-18
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR.
Protein Sci., 24, 2015
2MQJ
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BU of 2mqj by Molmil
Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum
Descriptor: Ubiquitin-like protein
Authors:Ye, K.
Deposit date:2014-06-22
Release date:2015-06-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum
To be Published
2N7D
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BU of 2n7d by Molmil
Solution structure of the UBL domain of human Ddi2
Descriptor: Protein DDI1 homolog 2
Authors:Siva, M, Grantz Saskova, K, Veverka, V.
Deposit date:2015-09-08
Release date:2016-07-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Human DNA-Damage-Inducible 2 Protein Is Structurally and Functionally Distinct from Its Yeast Ortholog.
Sci Rep, 6, 2016
2NR2
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BU of 2nr2 by Molmil
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins
Descriptor: Ubiquitin
Authors:Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M.
Deposit date:2006-11-01
Release date:2007-05-08
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins
J.Biomol.Nmr, 37, 2007
2OJR
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BU of 2ojr by Molmil
Structure of ubiquitin solved by SAD using the Lanthanide-Binding Tag
Descriptor: TERBIUM(III) ION, Ubiquitin
Authors:Silvaggi, N.R, Allen, K.N.
Deposit date:2007-01-13
Release date:2007-06-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Double-Lanthanide-Binding Tags for Macromolecular Crystallographic Structure Determination.
J.Am.Chem.Soc., 129, 2007
2O6V
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BU of 2o6v by Molmil
Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, Ubiquitin
Authors:Eddins, M.J, Wolberger, C.
Deposit date:2006-12-08
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH
J.Mol.Biol., 367, 2007
2KAN
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BU of 2kan by Molmil
Solution NMR structure of ubiquitin-like domain of Arabidopsis thaliana protein At2g32350. Northeast Structural Genomics Consortium target AR3433A
Descriptor: uncharacterized protein ar3433a
Authors:Eletsky, A, Mills, J.L, Sukumaran, D, Hua, J, Shastry, R, Jiang, M, Ciccosanti, C, Xiao, R, Liu, J, Everret, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-11-11
Release date:2008-11-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR structure of ubiquitin-like domain of Arabidopsis thaliana protein At2g32350.
To be Published
2KDB
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BU of 2kdb by Molmil
Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A
Descriptor: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
Authors:Wu, B, Yee, A, Fares, C, Lemak, A, Gutmanas, A, Doherty, R, Semesi, A, Dhe-Paganon, S, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)
Deposit date:2009-01-06
Release date:2009-02-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of human homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 2 (Herpud2 or Herp)
To be Published
2PEA
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BU of 2pea by Molmil
NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements
Descriptor: Ubiquitin
Authors:Ryabov, Y, Fushman, D.
Deposit date:2007-04-02
Release date:2007-07-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor.
J.Am.Chem.Soc., 129, 2007
2GBJ
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BU of 2gbj by Molmil
Crystal Structure of the 9-10 8 Glycine Insertion Mutant of Ubiquitin.
Descriptor: Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2GBN
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BU of 2gbn by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
Descriptor: Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2KK8
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BU of 2kk8 by Molmil
NMR Solution Structure of a Putative Uncharacterized Protein obtained from Arabidopsis thaliana: Northeast Structural Genomics Consortium target AR3449A
Descriptor: Uncharacterized protein AT4g05270
Authors:Mani, R, Gurla, S.V.T, Shastry, R, Ciccosanti, C, Foote, E, Jiang, M, Xiao, R, Nair, R, Everett, J, Huang, Y, Acton, T, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-06-16
Release date:2009-06-30
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:NMR Solution Structure of a Putative Uncharacterized Protein obtained from Arabidopsis thaliana: Northeast Structural Genomics Consortium Target AR3449A
To be Published
2KDI
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BU of 2kdi by Molmil
Solution structure of a Ubiquitin/UIM fusion protein
Descriptor: Ubiquitin, Vacuolar protein sorting-associated protein 27 fusion protein
Authors:Sgourakis, N.G, Patel, M.M, Garcia, A.E, Makhatadze, G.I, McCallum, S.A.
Deposit date:2009-01-09
Release date:2010-02-09
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Conformational Dynamics and Structural Plasticity Play Critical Roles in the Ubiquitin Recognition of a UIM Domain.
J.Mol.Biol., 396, 2010
2GBM
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BU of 2gbm by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
Descriptor: ARSENIC, Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2GBK
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BU of 2gbk by Molmil
Crystal Structure of the 9-10 MoaD Insertion Mutant of Ubiquitin
Descriptor: Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2KO3
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BU of 2ko3 by Molmil
Nedd8 solution structure
Descriptor: NEDD8
Authors:Choi, Y.S, Jeon, Y.H, Cheong, C.
Deposit date:2009-09-09
Release date:2009-11-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:60th residues of ubiquitin and Nedd8 are located out of E2-binding surfaces, but are important for K48 ubiquitin-linkage.
Febs Lett., 583, 2009
2KLC
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BU of 2klc by Molmil
NMR solution structure of human ubiquitin-like domain of ubiquilin 1, Northeast Structural Genomics Consortium (NESG) target HT5A
Descriptor: Ubiquilin-1
Authors:Doherty, R.S, Dhe-Paganon, S, Fares, C, Lemak, S, Gutmanas, A, Garcia, M, Yee, A, Montelione, G.T, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2009-06-30
Release date:2009-07-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of ubiquitin-like domain of ubiquilin 1
To be Published
2KX0
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BU of 2kx0 by Molmil
the solution structure of UBB+1, frameshift mutant of ubiquitin B
Descriptor: ubiquitin B
Authors:Ko, S.
Deposit date:2010-04-22
Release date:2010-09-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:the solution structure of UBB+1, frameshift mutant of ubiquitin B
To be Published
2KLG
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BU of 2klg by Molmil
PERE NMR structure of ubiquitin
Descriptor: Ubiquitin
Authors:Madl, T, Bermel, W, Zangger, K.
Deposit date:2009-07-02
Release date:2009-10-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Use of Relaxation Enhancements in a Paramagnetic Environment for the Structure Determination of Proteins Using NMR Spectroscopy
Angew.Chem.Int.Ed.Engl., 48, 2009
2KN5
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BU of 2kn5 by Molmil
A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
Descriptor: Ubiquitin
Authors:Friedland, G.D.
Deposit date:2009-08-14
Release date:2009-11-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family.
PLOS COMPUT.BIOL., 5, 2009
2KOX
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BU of 2kox by Molmil
NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin
Descriptor: Ubiquitin
Authors:Fenwick, R.B, Richter, B, Lee, D, Walter, K.F.A, Milovanovic, D, Becker, S, Lakomek, N.A, Griesinger, C, Salvatella, X.
Deposit date:2009-10-02
Release date:2011-06-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition
J.Am.Chem.Soc., 2011
2OOB
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BU of 2oob by Molmil
crystal structure of the UBA domain from Cbl-b ubiquitin ligase in complex with ubiquitin
Descriptor: E3 ubiquitin-protein ligase CBL-B, Ubiquitin
Authors:Kozlov, G, Gehring, K.
Deposit date:2007-01-25
Release date:2007-02-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b.
Mol.Cell, 27, 2007

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