Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 666 results

7PUX
DownloadVisualize
BU of 7pux by Molmil
Structure of p97 N-D1(L198W) in complex with Fragment TROLL2
Descriptor: (1S)-2-amino-1-(4-bromophenyl)ethan-1-ol, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Bothe, S, Schindelin, H.
Deposit date:2021-10-01
Release date:2022-12-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Fragment screening using biolayer interferometry reveals ligands targeting the SHP-motif binding site of the AAA+ ATPase p97
Commun Chem, 5, 2022
6P12
DownloadVisualize
BU of 6p12 by Molmil
Structure of spastin AAA domain (wild-type) in complex with diaminotriazole-based inhibitor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-{[5-amino-1-(2-fluoro-6-methoxybenzene-1-carbonyl)-1H-1,2,4-triazol-3-yl]amino}-N-methylbenzamide, Drosophila melanogaster Spastin AAA domain, ...
Authors:Pisa, R, Cupido, T, Kapoor, T.M.
Deposit date:2019-05-17
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.94131851 Å)
Cite:Analyzing Resistance to Design Selective Chemical Inhibitors for AAA Proteins.
Cell Chem Biol, 26, 2019
6P07
DownloadVisualize
BU of 6p07 by Molmil
Spastin hexamer in complex with substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Sandate, C.R, Szyk, A, Zehr, E, Roll-Mecak, A, Lander, G.C.
Deposit date:2019-05-16
Release date:2019-06-12
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:An allosteric network in spastin couples multiple activities required for microtubule severing.
Nat.Struct.Mol.Biol., 26, 2019
6P14
DownloadVisualize
BU of 6p14 by Molmil
Structure of spastin AAA domain (T692A mutant) in complex with a diaminotriazole-based inhibitor (crystal form B)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-{[5-amino-1-(2-fluoro-6-methoxybenzene-1-carbonyl)-1H-1,2,4-triazol-3-yl]amino}-N-methylbenzamide, ACETATE ION, ...
Authors:Pisa, R, Cupido, T, Kapoor, T.M.
Deposit date:2019-05-17
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.93001127 Å)
Cite:Analyzing Resistance to Design Selective Chemical Inhibitors for AAA Proteins.
Cell Chem Biol, 26, 2019
6P13
DownloadVisualize
BU of 6p13 by Molmil
Structure of spastin AAA domain (T692A mutant) in complex with a diaminotriazole-based inhibitor (crystal form A)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-{[5-amino-1-(2-fluoro-6-methoxybenzene-1-carbonyl)-1H-1,2,4-triazol-3-yl]amino}-N-methylbenzamide, SULFATE ION, ...
Authors:Pisa, R, Cupido, T, Kapoor, T.M.
Deposit date:2019-05-17
Release date:2019-08-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Analyzing Resistance to Design Selective Chemical Inhibitors for AAA Proteins.
Cell Chem Biol, 26, 2019
6PDY
DownloadVisualize
BU of 6pdy by Molmil
Msp1-substrate complex in open conformation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Wang, L, Myasnikov, A, Pan, X, Walter, P.
Deposit date:2019-06-19
Release date:2020-02-12
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of the AAA protein Msp1 reveals mechanism of mislocalized membrane protein extraction.
Elife, 9, 2020
7QO6
DownloadVisualize
BU of 7qo6 by Molmil
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state
Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ...
Authors:Hung, K.Y.S, Klumpe, S, Eisele, M.R, Elsasser, S, Geng, T.T, Cheng, T.C, Joshi, T, Rudack, T, Sakata, E, Finley, D.
Deposit date:2021-12-23
Release date:2022-03-16
Last modified:2022-07-20
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Allosteric control of Ubp6 and the proteasome via a bidirectional switch.
Nat Commun, 13, 2022
6PEK
DownloadVisualize
BU of 6pek by Molmil
Structure of Spastin Hexamer (Subunit A-E) in complex with substrate peptide
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Han, H, Schubert, H.L, McCullough, J, Monroe, N, Sundquist, W.I, Hill, C.P.
Deposit date:2019-06-20
Release date:2019-12-04
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of spastin bound to a glutamate-rich peptide implies a hand-over-hand mechanism of substrate translocation.
J.Biol.Chem., 295, 2020
6PDW
DownloadVisualize
BU of 6pdw by Molmil
Msp1-substrate complex in closed conformation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Wang, L, Myasnikov, A, Pan, X, Walter, P.
Deposit date:2019-06-19
Release date:2020-02-12
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the AAA protein Msp1 reveals mechanism of mislocalized membrane protein extraction.
Elife, 9, 2020
6PEN
DownloadVisualize
BU of 6pen by Molmil
Structure of Spastin Hexamer (whole model) in complex with substrate peptide
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, EYEYEYEYEY, ...
Authors:Han, H, Schubert, H.L, McCullough, J, Monroe, N, Sundquist, W.I, Hill, C.P.
Deposit date:2019-06-20
Release date:2019-12-04
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of spastin bound to a glutamate-rich peptide implies a hand-over-hand mechanism of substrate translocation.
J.Biol.Chem., 295, 2020
6PXI
DownloadVisualize
BU of 6pxi by Molmil
The crystal structure of a singly capped HslUV complex with an axial pore plug and a HslU E257Q mutation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent protease ATPase subunit HslU, ATP-dependent protease subunit HslV, ...
Authors:Baytshtok, V, Grant, R.A, Sauer, R.T.
Deposit date:2019-07-26
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.447 Å)
Cite:Heat activates the AAA+ HslUV protease by melting an axial autoinhibitory plug.
Cell Rep, 34, 2021
7QY7
DownloadVisualize
BU of 7qy7 by Molmil
Proteasome-ZFAND5 Complex Z-A state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXW
DownloadVisualize
BU of 7qxw by Molmil
Proteasome-ZFAND5 Complex Z+D state
Descriptor: 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, 26S protease regulatory subunit 7, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QYA
DownloadVisualize
BU of 7qya by Molmil
Proteasome-ZFAND5 Complex Z-B state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXU
DownloadVisualize
BU of 7qxu by Molmil
Proteasome-ZFAND5 Complex Z+C state
Descriptor: 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, 26S protease regulatory subunit 7, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXN
DownloadVisualize
BU of 7qxn by Molmil
Proteasome-ZFAND5 Complex Z+A state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-26
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QYB
DownloadVisualize
BU of 7qyb by Molmil
Proteasome-ZFAND5 Complex Z-C state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXX
DownloadVisualize
BU of 7qxx by Molmil
Proteasome-ZFAND5 Complex Z+E state
Descriptor: 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, 26S protease regulatory subunit 7, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXP
DownloadVisualize
BU of 7qxp by Molmil
Proteasome-ZFAND5 Complex Z+B state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-26
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
8THB
DownloadVisualize
BU of 8thb by Molmil
Structure of the Saccharomyces cerevisiae PCNA clamp unloader Elg1-RFC complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ELG1 isoform 1, MAGNESIUM ION, ...
Authors:Zheng, F, Yao, Y.N, Georgescu, R, O'Donnell, M.E, Li, H.
Deposit date:2023-07-14
Release date:2024-05-22
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the PCNA unloader Elg1-RFC.
Sci Adv, 10, 2024
8TID
DownloadVisualize
BU of 8tid by Molmil
Combined linker domain of N-DRC and associated proteins Tetrahymena
Descriptor: AAA family ATPase CDC48 subfamily protein, CFAP20, Calmodulin 7-2, ...
Authors:Ghanaeian, A.G, Majhi, S.M, McCaffrey, C.M, Nami, B.N, Black, C.B, Yang, S.K, Legal, T.L, Papoulas, O.P, Janowska, M.J, Valente-Paterno, M.V, Marcotte, E.M, Wloga, D.W, Bui, K.H.
Deposit date:2023-07-19
Release date:2023-09-27
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.
Nat Commun, 14, 2023
7R7S
DownloadVisualize
BU of 7r7s by Molmil
p47-bound p97-R155H mutant with ATPgammaS
Descriptor: NSFL1 cofactor p47, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Transitional endoplasmic reticulum ATPase
Authors:Nandi, P, Li, S, Coulmbres, R.C.A, Wang, F, Williams, D.R, Malyutin, A.G, Poh, Y.-P, Chou, T.-F, Chiu, P.-L.
Deposit date:2021-06-25
Release date:2021-08-04
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes.
Int J Mol Sci, 22, 2021
7R7T
DownloadVisualize
BU of 7r7t by Molmil
p47-bound p97-R155H mutant with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NSFL1 cofactor p47, Transitional endoplasmic reticulum ATPase
Authors:Nandi, P, Li, S, Coulmbres, R.C.A, Wang, F, Williams, D.R, Malyutin, A.G, Poh, Y.-P, Chou, T.-F, Chiu, P.-L.
Deposit date:2021-06-25
Release date:2021-08-04
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes.
Int J Mol Sci, 22, 2021
8TH8
DownloadVisualize
BU of 8th8 by Molmil
Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila
Descriptor: AAA family ATPase CDC48 subfamily protein, Calmodulin 7-2, Coiled-coil domain-containing protein 153, ...
Authors:Ghanaeian, A.G, Bui, K.H.
Deposit date:2023-07-14
Release date:2023-09-20
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.
Nat Commun, 14, 2023
7R7U
DownloadVisualize
BU of 7r7u by Molmil
D1 and D2 domain structure of the p97(R155H)-p47 complex
Descriptor: Transitional endoplasmic reticulum ATPase
Authors:Nandi, P, Li, S, Coulmbres, R.C.A, Wang, F, Williams, D.R, Poh, Y.-P, Chou, T.-F, Chiu, P.-L.
Deposit date:2021-06-25
Release date:2021-08-04
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural and Functional Analysis of Disease-Linked p97 ATPase Mutant Complexes.
Int J Mol Sci, 22, 2021

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon