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PDB: 404 results

6VOY
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BU of 6voy by Molmil
Cryo-EM structure of HTLV-1 instasome
Descriptor: DNA (25-MER), DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3'), DNA-binding protein 7d, ...
Authors:Bhatt, V, Shi, K, Sundborger, A, Aihara, H.
Deposit date:2020-02-01
Release date:2020-07-01
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of host protein hijacking in human T-cell leukemia virus integration.
Nat Commun, 11, 2020
1AFV
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BU of 1afv by Molmil
HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3
Descriptor: ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN), ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN), HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN, ...
Authors:Momany, C, Kovari, L.C, Prongay, A.J, Keller, W, Gitti, R.K, Lee, B.M, Gorbalenya, A.E, Tong, L, Mcclure, J, Ehrlich, L.S, Summers, M.F, Carter, C, Rossmann, M.G.
Deposit date:1997-03-14
Release date:1997-08-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of dimeric HIV-1 capsid protein.
Nat.Struct.Biol., 3, 1996
5U1C
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BU of 5u1c by Molmil
Structure of tetrameric HIV-1 Strand Transfer Complex Intasome
Descriptor: DNA (11-MER), DNA (23-MER), DNA (37-MER), ...
Authors:Lyumkis, D, Passos, D.
Deposit date:2016-11-28
Release date:2017-01-11
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome.
Science, 355, 2017
3DTJ
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BU of 3dtj by Molmil
HIV-1 capsid C-terminal domain mutant (E187A)
Descriptor: HIV-1 capsid protein
Authors:Igonet, S, Vaney, M.C, Rey, F.A.
Deposit date:2008-07-15
Release date:2008-09-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (4 Å)
Cite:Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
J.Biol.Chem., 283, 2008
6VDK
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BU of 6vdk by Molmil
CryoEM structure of HIV-1 conserved Intasome Core
Descriptor: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide, DNA (25-MER), DNA (27-MER), ...
Authors:Li, M, Chen, X, Craigie, R.
Deposit date:2019-12-27
Release date:2020-02-05
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:A Peptide Derived from Lens Epithelium-Derived Growth Factor Stimulates HIV-1 DNA Integration and Facilitates Intasome Structural Studies.
J.Mol.Biol., 432, 2020
6U8Q
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BU of 6u8q by Molmil
CryoEM structure of HIV-1 cleaved synaptic complex (CSC) intasome
Descriptor: (4R,12aS)-N-(2,4-difluorobenzyl)-7-hydroxy-4-methyl-6,8-dioxo-3,4,6,8,12,12a-hexahydro-2H-pyrido[1',2':4,5]pyrazino[2,1-b][1,3]oxazine-9-carboxamide, DNA (25-MER), DNA (27-MER), ...
Authors:Li, M, Chen, X, Craigie, R.
Deposit date:2019-09-05
Release date:2020-02-05
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.67 Å)
Cite:A Peptide Derived from Lens Epithelium-Derived Growth Factor Stimulates HIV-1 DNA Integration and Facilitates Intasome Structural Studies.
J.Mol.Biol., 432, 2020
3P0A
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BU of 3p0a by Molmil
X-ray structure of pentameric HIV-1 CA
Descriptor: HIV-1 CA
Authors:Pornillos, O.
Deposit date:2010-09-27
Release date:2011-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (5.954 Å)
Cite:Atomic-level modelling of the HIV capsid.
Nature, 469, 2011
3DIK
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BU of 3dik by Molmil
Pseudo-atomic model of the HIV-1 CA hexameric lattice
Descriptor: Capsid protein p24
Authors:Ganser-Pornillos, B.K, Cheng, A, Yeager, M.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2024-02-21
Method:ELECTRON CRYSTALLOGRAPHY (9 Å)
Cite:Structure of full-length HIV-1 CA: a model for the mature capsid lattice
Cell(Cambridge,Mass.), 131, 2007
1WJB
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BU of 1wjb by Molmil
SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF HIV-1 INTEGRASE (D FORM), NMR, 40 STRUCTURES
Descriptor: HIV-1 INTEGRASE, ZINC ION
Authors:Clore, G.M, Cai, M, Caffrey, M, Gronenborn, A.M.
Deposit date:1997-05-13
Release date:1998-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.
Nat.Struct.Biol., 4, 1997
2M3Z
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BU of 2m3z by Molmil
NMR solution structure of HIV-1 nucleocapsid protein in complex with an inhibitor displaying a 2 inhibitors:1 NC stoichiometry
Descriptor: (3E)-3-{(2Z)-[(5Z)-5-(furan-2-ylmethylidene)-4-oxo-1,3-thiazolidin-2-ylidene]hydrazinylidene}-2-oxo-2,3-dihydro-1H-indole-5-sulfonic acid, NUCLEOCAPSID PROTEIN P7, ZINC ION
Authors:Goudreau, N, Hucke, O.
Deposit date:2013-01-28
Release date:2013-02-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Discovery and Structural Characterization of a New Inhibitor Series of HIV-1 Nucleocapsid Function: NMR Solution Structure Determination of a Ternary Complex Involving a 2:1 Inhibitor/NC Stoichiometry.
J.Mol.Biol., 425, 2013
2JPR
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BU of 2jpr by Molmil
Joint refinement of the HIV-1 CA-NTD in complex with the assembly inhibitor CAP-1
Descriptor: 1-(3-chloro-4-methylphenyl)-3-{2-[({5-[(dimethylamino)methyl]-2-furyl}methyl)thio]ethyl}urea, Gag-Pol polyprotein
Authors:Kelly, B.N, Kyere, S, Kinde, I, Tang, C, Howard, B.R, Robinson, H, Sundquist, W.I, Summers, M.F, Hill, C.P.
Deposit date:2007-05-22
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the Antiviral Assembly Inhibitor CAP-1 Complex with the HIV-1 CA Protein
J.Mol.Biol., 373, 2007
2LYA
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BU of 2lya by Molmil
Structure of HIV-1 myr(-) matrix protein in complex with 1,2-dioctanoyl-sn-phosphatidylcholine
Descriptor: 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Matrix protein p17
Authors:Vlach, J, Saad, J.
Deposit date:2012-09-14
Release date:2013-02-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Trio engagement via plasma membrane phospholipids and the myristoyl moiety governs HIV-1 matrix binding to bilayers.
Proc.Natl.Acad.Sci.USA, 110, 2013
2LYB
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BU of 2lyb by Molmil
Structure of HIV-1 myr(-) matrix protein in complex with 1,2-dioctanoyl-sn-phosphatidyl-L-serine
Descriptor: Matrix protein p17, O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
Authors:Vlach, J, Saad, J.
Deposit date:2012-09-14
Release date:2013-02-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Trio engagement via plasma membrane phospholipids and the myristoyl moiety governs HIV-1 matrix binding to bilayers.
Proc.Natl.Acad.Sci.USA, 110, 2013
2JYG
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BU of 2jyg by Molmil
Solution Structure of the W184A/M185A Mutant of the Carboxy-terminal Dimerization Domain of the HIV-1 Capsid Protein
Descriptor: Capsid protein p24 (CA)
Authors:Wong, H.C, Shin, R, Krishna, N.R.
Deposit date:2007-12-13
Release date:2008-02-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of a Double Mutant of the Carboxy-Terminal Dimerization Domain of the HIV-1 Capsid Protein.
Biochemistry, 47, 2008
2JYL
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BU of 2jyl by Molmil
Solution Structure of A Double Mutant of The Carboxy-terminal Dimerization Domain of The HIV-1 Capsid Protein
Descriptor: Capsid protein p24 (CA)
Authors:Wong, H.C, Shin, R, Krishna, N.R.
Deposit date:2007-12-14
Release date:2008-02-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of a Double Mutant of the Carboxy-Terminal Dimerization Domain of the HIV-1 Capsid Protein.
Biochemistry, 47, 2008
2M8L
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BU of 2m8l by Molmil
HIV capsid dimer structure
Descriptor: Capsid protein p24
Authors:Deshmukh, L, Schwieters, C.D, Grishaev, A, Clore, G, Ghirlando, R.
Deposit date:2013-05-23
Release date:2013-11-20
Last modified:2023-06-14
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Structure and Dynamics of Full-Length HIV-1 Capsid Protein in Solution.
J.Am.Chem.Soc., 135, 2013
1WJD
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BU of 1wjd by Molmil
SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF HIV-1 INTEGRASE (E FORM), NMR, 38 STRUCTURES
Descriptor: HIV-1 INTEGRASE, ZINC ION
Authors:Clore, G.M, Cai, M, Caffrey, M, Gronenborn, A.M.
Deposit date:1997-05-13
Release date:1998-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.
Nat.Struct.Biol., 4, 1997
2M8P
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BU of 2m8p by Molmil
The structure of the W184AM185A mutant of the HIV-1 capsid protein
Descriptor: Capsid protein p24
Authors:Deshmukh, L, Schwieters, C.D, Grishaev, A, Clore, G, Ghirlando, R.
Deposit date:2013-05-24
Release date:2013-11-20
Last modified:2023-06-14
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Structure and Dynamics of Full-Length HIV-1 Capsid Protein in Solution.
J.Am.Chem.Soc., 135, 2013
2M8N
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BU of 2m8n by Molmil
HIV-1 capsid monomer structure
Descriptor: Capsid protein p24
Authors:Deshmukh, L, Schwieters, C.D, Grishaev, A, Clore, G, Ghirlando, R.
Deposit date:2013-05-24
Release date:2013-11-20
Last modified:2023-06-14
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Structure and Dynamics of Full-Length HIV-1 Capsid Protein in Solution.
J.Am.Chem.Soc., 135, 2013
2HMX
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BU of 2hmx by Molmil
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 MATRIX PROTEIN
Descriptor: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 MATRIX PROTEIN
Authors:Massiah, M.A, Starich, M.R, Paschall, C, Christensen, A.M, Sundquist, W.I, Summers, M.F.
Deposit date:1995-09-22
Release date:1996-01-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Three-dimensional structure of the human immunodeficiency virus type 1 matrix protein.
J.Mol.Biol., 244, 1994
1JIC
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BU of 1jic by Molmil
SOLUTION NMR STRUCTURE OF RECOMBINANT SSO7D WITH RNASE ACTIVITY, MINIMIZED AVERAGE STRUCTURE
Descriptor: SSO7D
Authors:Consonni, R, Santomo, L, Zetta, L.
Deposit date:1998-07-20
Release date:1998-10-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A single-point mutation in the extreme heat- and pressure-resistant sso7d protein from sulfolobus solfataricus leads to a major rearrangement of the hydrophobic core.
Biochemistry, 38, 1999
1BBX
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BU of 1bbx by Molmil
NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE
Descriptor: DNA (5'-D(*CP*TP*AP*GP*CP*GP*CP*GP*CP*TP*AP*G)-3'), DNA-BINDING PROTEIN 7D
Authors:Agback, P, Baumann, H, Knapp, S, Ladenstein, R, Hard, T.
Deposit date:1998-04-24
Release date:1998-10-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Architecture of Nonspecific Protein-DNA Interactions in the Sso7D-DNA Complex
Nat.Struct.Biol., 5, 1998
2H3Q
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BU of 2h3q by Molmil
Solution structure of HIV-1 myrMA bound to di-C4-phosphatidylinositol-(4,5)-bisphosphate
Descriptor: (2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE, Gag polyprotein, MYRISTIC ACID
Authors:Saad, J.S, Miller, J, Tai, J, Kim, A, Ghanam, R.H, Summers, M.F.
Deposit date:2006-05-22
Release date:2006-07-25
Last modified:2014-01-29
Method:SOLUTION NMR
Cite:Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1UPH
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BU of 1uph by Molmil
HIV-1 Myristoylated Matrix
Descriptor: GAG POLYPROTEIN
Authors:Tang, C, Loeliger, E, Luncsford, P, Kinde, I, Beckett, D, Summers, M.F.
Deposit date:2003-10-01
Release date:2004-01-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Entropic Switch Regulates Myristate Exposure in the HIV-1 Matrix Protein
Proc.Natl.Acad.Sci.USA, 101, 2004
2H3Z
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BU of 2h3z by Molmil
Structure of the HIV-1 matrix protein bound to di-C4-phosphatidylinositol-(4,5)-bisphosphate
Descriptor: (2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1 ,2-DIYL DIBUTANOATE, Gag polyprotein
Authors:Saad, J.S, Miller, J, Tai, J, Kim, A, Ghanam, R.H, Summers, M.F.
Deposit date:2006-05-23
Release date:2006-07-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly.
Proc.Natl.Acad.Sci.Usa, 103, 2006

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