Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 457 results

4ERW
DownloadVisualize
BU of 4erw by Molmil
CDK2 in complex with staurosporine
Descriptor: 1,2-ETHANEDIOL, Cyclin-dependent kinase 2, STAUROSPORINE
Authors:Alam, R, Martin, M.P, Zhu, J.-Y, Schonbrunn, E.
Deposit date:2012-04-20
Release date:2012-08-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Novel Approach to the Discovery of Small-Molecule Ligands of CDK2.
Chembiochem, 13, 2012
5B64
DownloadVisualize
BU of 5b64 by Molmil
A novel binding mode of MAGUK GK domain revealed by DLG GK domain in complex with KIF13B MBS domain
Descriptor: DLG GK, GLYCEROL, Protein Kif13b, ...
Authors:Shang, Y, Zhu, J, Zhang, M.
Deposit date:2016-05-24
Release date:2016-10-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An Atypical MAGUK GK Target Recognition Mode Revealed by the Interaction between DLG and KIF13B
Structure, 24, 2016
4LS0
DownloadVisualize
BU of 4ls0 by Molmil
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with DH01B0033
Descriptor: 2-{(E)-[2-(4-phenyl-1,3-thiazol-2-yl)hydrazinylidene]methyl}benzaldehyde, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
Authors:Zhu, L, Li, H, Ren, X, Zhu, J.
Deposit date:2013-07-21
Release date:2014-07-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of human dihydroorotate dehydrogenase (DHODH) with DHO1B0033
To be Published
3NJP
DownloadVisualize
BU of 3njp by Molmil
The Extracellular and Transmembrane Domain Interfaces in Epidermal Growth Factor Receptor Signaling
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Epidermal growth factor, Epidermal growth factor receptor, ...
Authors:Lu, C, Mi, L.-Z, Grey, M.J, Zhu, J, Graef, E, Yokoyama, S, Springer, T.A.
Deposit date:2010-06-17
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.304 Å)
Cite:Structural evidence for loose linkage between ligand binding and kinase activation in the epidermal growth factor receptor.
Mol.Cell.Biol., 30, 2010
6PPA
DownloadVisualize
BU of 6ppa by Molmil
Crystal structure of the unliganded bromodomain of human BRD7
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 7, PHOSPHATE ION
Authors:Chan, A, Karim, M.R, Zhu, J, Schonbrunn, E.
Deposit date:2019-07-05
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Basis of Inhibitor Selectivity in the BRD7/9 Subfamily of Bromodomains.
J.Med.Chem., 63, 2020
1P4A
DownloadVisualize
BU of 1p4a by Molmil
Crystal Structure of the PurR complexed with cPRPP
Descriptor: 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE, Pur operon repressor
Authors:Bera, A.K, Zhu, J, Zalkin, H, Smith, J.L.
Deposit date:2003-04-22
Release date:2003-12-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Functional dissection of the Bacillus subtilis pur operator site.
J.Bacteriol., 185, 2003
5L6P
DownloadVisualize
BU of 5l6p by Molmil
EphB3 kinase domain covalently bound to an irreversible inhibitor (compound 6)
Descriptor: 1,4-DIETHYLENE DIOXIDE, Ephrin type-B receptor 3, ~{N}-(4-phenylazanylquinazolin-7-yl)ethanamide
Authors:Schimpl, M, Overman, R, Kung, A, Chen, Y.-C, Ni, F, Zhu, J, Turner, M, Molina, H, Zhang, C.
Deposit date:2016-05-30
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Development of Specific, Irreversible Inhibitors for a Receptor Tyrosine Kinase EphB3.
J.Am.Chem.Soc., 138, 2016
5L6O
DownloadVisualize
BU of 5l6o by Molmil
EphB3 kinase domain covalently bound to an irreversible inhibitor (compound 3)
Descriptor: 1,4-DIETHYLENE DIOXIDE, 1-(4-phenylazanylquinazolin-7-yl)ethanone, Ephrin type-B receptor 3
Authors:Schimpl, M, Overman, R, Kung, A, Chen, Y.-C, Ni, F, Zhu, J, Turner, M, Molina, H, Zhang, C.
Deposit date:2016-05-30
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Development of Specific, Irreversible Inhibitors for a Receptor Tyrosine Kinase EphB3.
J.Am.Chem.Soc., 138, 2016
1T48
DownloadVisualize
BU of 1t48 by Molmil
Allosteric Inhibition of Protein Tyrosine Phosphatase 1B
Descriptor: 3-(3,5-DIBROMO-4-HYDROXY-BENZOYL)-2-ETHYL-BENZOFURAN-6-SULFONIC ACID DIMETHYLAMIDE, Protein-tyrosine phosphatase, non-receptor type 1
Authors:Wiesmann, C, Barr, K.J, Kung, J, Zhu, J, Shen, W, Fahr, B.J, Zhong, M, Erlanson, D.A, Taylor, L, Randal, M, McDowell, R.S, Hansen, S.K.
Deposit date:2004-04-28
Release date:2004-07-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Allosteric inhibition of protein tyrosine phosphatase 1B
Nat.Struct.Mol.Biol., 11, 2004
1T4J
DownloadVisualize
BU of 1t4j by Molmil
Allosteric Inhibition of Protein Tyrosine Phosphatase 1B
Descriptor: 3-(3,5-DIBROMO-4-HYDROXY-BENZOYL)-2-ETHYL-BENZOFURAN-6-SULFONIC ACID [4-(THIAZOL-2-YLSULFAMOYL)-PHENYL]-AMIDE, Protein-tyrosine phosphatase, non-receptor type 1
Authors:Wiesmann, C, Barr, K.J, Kung, J, Zhu, J, Shen, W, Fahr, B.J, Zhong, M, Taylor, L, Randal, M, McDowell, R.S, Hansen, S.K.
Deposit date:2004-04-29
Release date:2004-07-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Allosteric inhibition of protein tyrosine phosphatase 1B
Nat.Struct.Mol.Biol., 11, 2004
1T49
DownloadVisualize
BU of 1t49 by Molmil
Allosteric Inhibition of Protein Tyrosine Phosphatase 1B
Descriptor: 3-(3,5-DIBROMO-4-HYDROXY-BENZOYL)-2-ETHYL-BENZOFURAN-6-SULFONIC ACID (4-SULFAMOYL-PHENYL)-AMIDE, MAGNESIUM ION, Protein-tyrosine phosphatase, ...
Authors:Wiesmann, C, Barr, K.J, Kung, J, Zhu, J, Shen, W, Fahr, B.J, Zhong, M, Taylor, L, Randal, M, McDowell, R.S, Hansen, S.K.
Deposit date:2004-04-28
Release date:2004-07-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Allosteric inhibition of protein tyrosine phosphatase 1B.
Nat.Struct.Mol.Biol., 11, 2004
6XK9
DownloadVisualize
BU of 6xk9 by Molmil
Cereblon in complex with DDB1, CC-90009, and GSPT1
Descriptor: 2-(4-chlorophenyl)-N-({2-[(3S)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-5-yl}methyl)-2,2-difluoroacetamide, DNA damage-binding protein 1, Eukaryotic peptide chain release factor GTP-binding subunit ERF3A, ...
Authors:Clayton, T.L, Tran, E.T, Zhu, J, Pagarigan, B.E, Matyskiela, M.E, Chamberlain, P.P.
Deposit date:2020-06-25
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:CC-90009, a novel cereblon E3 ligase modulator, targets acute myeloid leukemia blasts and leukemia stem cells.
Blood, 137, 2021
5GNV
DownloadVisualize
BU of 5gnv by Molmil
Structure of PSD-95/MAP1A complex reveals unique target recognition mode of MAGUK GK domain
Descriptor: Disks large homolog 4, Microtubule-associated protein 1A, SULFATE ION
Authors:Shang, Y, Xia, Y, Zhu, R, Zhu, J.
Deposit date:2016-07-25
Release date:2017-08-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.596 Å)
Cite:Structure of the PSD-95/MAP1A complex reveals a unique target recognition mode of the MAGUK GK domain
Biochem. J., 474, 2017
7BYJ
DownloadVisualize
BU of 7byj by Molmil
Crystal structure of the FERM domain of FRMPD4
Descriptor: FERM and PDZ domain-containing protein 4
Authors:Lin, L, Wang, M, Wang, C, Zhu, J.
Deposit date:2020-04-23
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of the FERM domain of a neural scaffold protein FRMPD4 implicated in X-linked intellectual disability.
Biochem.J., 477, 2020
8EQN
DownloadVisualize
BU of 8eqn by Molmil
BG505 UFO-E2p-L4P nanoparticle reconstructed by focused refinement with a mask around the nanoparticle core
Descriptor: BG505 UFO-E2p-L4P
Authors:Antanasijevic, A, Zhang, Y.N, Zhu, J, Ward, A.B.
Deposit date:2022-10-08
Release date:2023-04-19
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Single-component multilayered self-assembling protein nanoparticles presenting glycan-trimmed uncleaved prefusion optimized envelope trimmers as HIV-1 vaccine candidates.
Nat Commun, 14, 2023
1V1F
DownloadVisualize
BU of 1v1f by Molmil
Structure of the Arabidopsis thaliana SOS3 complexed with Calcium(II) and Manganese(II) ions
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCINEURIN B-LIKE PROTEIN 4, CALCIUM ION, ...
Authors:Sanchez-Barrena, M.J, Martinez-Ripoll, M, Zhu, J.K, Albert, A.
Deposit date:2004-04-15
Release date:2005-01-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Structure of the Arabidopsis Thaliana SOS3: Molecular Mechanism of Sensing Calcium for Salt Stress Response
J.Mol.Biol., 345, 2005
1V1G
DownloadVisualize
BU of 1v1g by Molmil
Structure of the Arabidopsis thaliana SOS3 complexed with Calcium(II) ion
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCINEURIN B-LIKE PROTEIN 4, CALCIUM ION, ...
Authors:Sanchez-Barrena, M.J, Martinez-Ripoll, M, Zhu, J.K, Albert, A.
Deposit date:2004-04-15
Release date:2005-01-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structure of the Arabidopsis Thaliana SOS3: Molecular Mechanism of Sensing Calcium for Salt Stress Response
J.Mol.Biol., 345, 2005
4G5S
DownloadVisualize
BU of 4g5s by Molmil
Structure of LGN GL3/Galphai3 complex
Descriptor: CITRIC ACID, G-protein-signaling modulator 2, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Jia, M, Li, J, Zhu, J, Wen, W, Zhang, M, Wang, W.
Deposit date:2012-07-18
Release date:2012-09-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.62 Å)
Cite:Crystal Structures of the scaffolding protein LGN reveal the general mechanism by which GoLoco binding motifs inhibit the release of GDP from Galphai subunits in G-coupled heterotrimeric proteins
To be Published
4JTU
DownloadVisualize
BU of 4jtu by Molmil
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with brequinar analogue
Descriptor: 6-bromo-2-{4-[(2R)-butan-2-yl]phenyl}-3-methylquinoline-4-carboxylic acid, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
Authors:Zhu, L, Zhu, J, Ren, X, Li, H.
Deposit date:2013-03-24
Release date:2014-03-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human dihydroorotate dehydrogenase (DHODH) with 057
To be Published
5EGG
DownloadVisualize
BU of 5egg by Molmil
Crystal structure of human ubiquitin-conjugating enzyme UBCH5C
Descriptor: Ubiquitin-conjugating enzyme E2 D3
Authors:Zhu, L, Li, H, Wu, F, Zhu, J.
Deposit date:2015-10-27
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural analysis of recombinant human ubiquitin-conjugating enzyme UbcH5c
Acta Pharm Sin B, 7, 2017
3V8S
DownloadVisualize
BU of 3v8s by Molmil
Human RHO-ASSOCIATED PROTEIN KINASE 1 (ROCK 1) IN COMPLEX WITH INDAZOLE DERIVATIVE (COMPOUND 18)
Descriptor: 1-(1H-indazol-5-yl)-3-(2-phenylethyl)urea, Rho-associated protein kinase 1
Authors:Martin, M.P, Zhu, J.-Yi, Schonbrunn, E.
Deposit date:2011-12-23
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.286 Å)
Cite:Fragment-based and structure-guided discovery and optimization of rho kinase inhibitors.
J.Med.Chem., 55, 2012
3UP7
DownloadVisualize
BU of 3up7 by Molmil
Aurora A in complex with YL1-038-09
Descriptor: 2-({2-[(4-carboxyphenyl)amino]pyrimidin-4-yl}amino)benzoic acid, Aurora kinase A
Authors:Martin, M.P, Zhu, J.-Y, Schonbrunn, E.
Deposit date:2011-11-17
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Development of o-Chlorophenyl Substituted Pyrimidines as Exceptionally Potent Aurora Kinase Inhibitors.
J.Med.Chem., 55, 2012
5F61
DownloadVisualize
BU of 5f61 by Molmil
Crystal structure of the first bromodomain of human BRD4 in complex with MA4-022-1
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ~{N}-[3-[[2-[[3-fluoranyl-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-methyl-pyrimidin-4-yl]amino]phenyl]-2-methyl-propane-2-sulfonamide
Authors:Ember, S.W, Zhu, J.-Y, Schonbrunn, E.
Deposit date:2015-12-04
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Potent Dual BET Bromodomain-Kinase Inhibitors as Value-Added Multitargeted Chemical Probes and Cancer Therapeutics.
Mol. Cancer Ther., 16, 2017
5F63
DownloadVisualize
BU of 5f63 by Molmil
Crystal structure of the first bromodomain of human BRD4 in complex with SG3-179
Descriptor: 1,2-ETHANEDIOL, 4-[[4-[[3-(~{tert}-butylsulfonylamino)-4-chloranyl-phenyl]amino]-5-methyl-pyrimidin-2-yl]amino]-2-fluoranyl-~{N}-(1-methylpiperidin-4-yl)benzamide, Bromodomain-containing protein 4
Authors:Ember, S.W, Zhu, J.-Y, Schonbrunn, E.
Deposit date:2015-12-04
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Potent Dual BET Bromodomain-Kinase Inhibitors as Value-Added Multitargeted Chemical Probes and Cancer Therapeutics.
Mol. Cancer Ther., 16, 2017
5F62
DownloadVisualize
BU of 5f62 by Molmil
Crystal structure of the first bromodomain of human BRD4 in complex with MA4-022-2
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, ~{N}-[2-chloranyl-5-[[2-[[3-fluoranyl-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-methyl-pyrimidin-4-yl]amino]phenyl]-2-methyl-propane-2-sulfonamide
Authors:Ember, S.W, Zhu, J.-Y, Schonbrunn, E.
Deposit date:2015-12-04
Release date:2017-02-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Potent Dual BET Bromodomain-Kinase Inhibitors as Value-Added Multitargeted Chemical Probes and Cancer Therapeutics.
Mol. Cancer Ther., 16, 2017

221051

數據於2024-06-12公開中

PDB statisticsPDBj update infoContact PDBjnumon