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PDB: 1645 results

8J58
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BU of 8j58 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in the apo-form
Descriptor: ATP synthase subunit a, ATP synthase subunit c
Authors:Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
Deposit date:2023-04-21
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8JR1
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Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with TBAJ-587
Descriptor: (1~{S},2~{S})-1-(6-bromanyl-2-methoxy-quinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2-fluoranyl-3-methoxy-phenyl)butan-2-ol, ATP synthase subunit a, ATP synthase subunit c
Authors:Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
Deposit date:2023-06-15
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
4XV3
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BU of 4xv3 by Molmil
B-Raf Kinase V600E oncogenic mutant in complex with PLX7922
Descriptor: N'-{3-[5-(2-aminopyrimidin-4-yl)-2-tert-butyl-1,3-thiazol-4-yl]-2-fluorophenyl}-N-ethyl-N-methylsulfuric diamide, Serine/threonine-protein kinase B-raf
Authors:Zhang, Y, Zhang, C.
Deposit date:2015-01-26
Release date:2015-10-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:RAF inhibitors that evade paradoxical MAPK pathway activation.
Nature, 526, 2015
4XV1
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BU of 4xv1 by Molmil
B-Raf Kinase V600E oncogenic mutant in complex with PLX7904
Descriptor: N'-(3-{[5-(2-cyclopropylpyrimidin-5-yl)-1H-pyrrolo[2,3-b]pyridin-3-yl]carbonyl}-2,4-difluorophenyl)-N-ethyl-N-methylsulfuric diamide, Serine/threonine-protein kinase B-raf
Authors:Zhang, Y, Zhang, C.
Deposit date:2015-01-26
Release date:2015-10-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:RAF inhibitors that evade paradoxical MAPK pathway activation.
Nature, 526, 2015
8E4V
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BU of 8e4v by Molmil
Solution structure of the WH domain of MORF
Descriptor: Isoform 3 of Histone acetyltransferase KAT6B
Authors:Zhang, Y, Kutateladze, T.G.
Deposit date:2022-08-19
Release date:2023-05-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:MORF and MOZ acetyltransferases target unmethylated CpG islands through the winged helix domain.
Nat Commun, 14, 2023
5E1R
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BU of 5e1r by Molmil
Crystal structure of pecan (carya illinoinensis) vicilin, a new food allergen
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 7S vicilin, COPPER (II) ION
Authors:Zhang, Y.Z.
Deposit date:2015-09-30
Release date:2016-08-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:Identification and Characterization of a New Pecan [Carya illinoinensis (Wangenh.) K. Koch] Allergen, Car i 2.
J.Agric.Food Chem., 64, 2016
5WSH
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BU of 5wsh by Molmil
Structure of HLA-A2 P130
Descriptor: Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, GLY-VAL-TRP-ILE-ARG-THR-PRO-THR-ALA, ...
Authors:Zhang, Y, Wu, Y, Qi, J, Liu, J, Gao, G.F, Meng, S.
Deposit date:2016-12-07
Release date:2017-12-20
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:CD8+T-Cell Response-Associated Evolution of Hepatitis B Virus Core Protein and Disease Progress.
J. Virol., 92, 2018
8H91
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BU of 8h91 by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with nanobody N19
Descriptor: Spike protein S1, nanobody
Authors:Zhang, Y.T, Li, J, Zhang, J.
Deposit date:2022-10-24
Release date:2023-11-01
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with nanobody N19
To Be Published
8HIC
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BU of 8hic by Molmil
Crystal structure of UrtA from Prochlorococcus marinus str. MIT 9313 in complex with urea and calcium
Descriptor: CALCIUM ION, Putative urea ABC transporter, substrate binding protein, ...
Authors:Zhang, Y.Z, Wang, P, Wang, C.
Deposit date:2022-11-19
Release date:2023-11-22
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and molecular basis for urea recognition by Prochlorococcus.
J.Biol.Chem., 299, 2023
5HMC
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BU of 5hmc by Molmil
Crystal structure of S. sahachiroi AziG complexed with 5-methyl naphthoic acid
Descriptor: 5-methylnaphthalene-1-carboxylic acid, Azi13, SULFATE ION
Authors:Zhang, Y, Erb, M.S, Ealick, S.E.
Deposit date:2016-01-15
Release date:2016-02-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Polyketide Ring Expansion Mediated by a Thioesterase, Chain Elongation and Cyclization Domain, in Azinomycin Biosynthesis: Characterization of AziB and AziG.
Biochemistry, 55, 2016
5E00
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BU of 5e00 by Molmil
Structure of HLA-A2 P130
Descriptor: Beta-2-microglobulin, GLY-VAL-TRP-ILE-ARG-THR-PRO-PRO-ALA, HLA class I histocompatibility antigen, ...
Authors:Zhang, Y, Wu, Y, Qi, J, Liu, J, Gao, G.F, Meng, S.
Deposit date:2015-09-26
Release date:2017-01-18
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:CD8+T-Cell Response-Associated Evolution of Hepatitis B Virus Core Protein and Disease Progress.
J. Virol., 92, 2018
5UQ8
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BU of 5uq8 by Molmil
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ("out" conformation)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M.
Deposit date:2017-02-07
Release date:2018-03-07
Last modified:2018-03-21
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
7XRJ
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BU of 7xrj by Molmil
crystal structure of N-acetyltransferase DgcN-25328
Descriptor: Putative NAD-dependent epimerase/dehydratase family protein, SULFATE ION
Authors:Zhang, Y.Z, Yu, Y, Cao, H.Y, Chen, X.L, Wang, P.
Deposit date:2022-05-10
Release date:2023-02-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel D-glutamate catabolic pathway in marine Proteobacteria and halophilic archaea.
Isme J, 17, 2023
4HW7
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BU of 4hw7 by Molmil
Crystal structure of FMS kinase domain with a small molecular inhibitor, PLX647-OME
Descriptor: 5-[(5-methoxy-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-[4-(trifluoromethyl)benzyl]pyridin-2-amine, Macrophage colony-stimulating factor 1 receptor
Authors:Zhang, Y, Zhang, C.
Deposit date:2012-11-07
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9001 Å)
Cite:Design and pharmacology of a highly specific dual FMS and KIT kinase inhibitor.
Proc.Natl.Acad.Sci.USA, 110, 2013
5GKD
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BU of 5gkd by Molmil
Structure of PL6 family alginate lyase AlyGC
Descriptor: AlyGC, CALCIUM ION, CARBONATE ION, ...
Authors:Zhang, Y.Z, Wang, P, Xu, F.
Deposit date:2016-07-04
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6
J. Biol. Chem., 292, 2017
5GKQ
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BU of 5gkq by Molmil
Structure of PL6 family alginate lyase AlyGC mutant-R241A
Descriptor: AlyGC mutant - R241A, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Zhang, Y.Z, Wang, P, Xu, F.
Deposit date:2016-07-05
Release date:2017-02-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.565 Å)
Cite:Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6
J. Biol. Chem., 292, 2017
5WMD
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BU of 5wmd by Molmil
N-terminal bromodomain of BRD4 in complex with OTX-015
Descriptor: 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(4-hydroxyphenyl)acetamide, Bromodomain-containing protein 4
Authors:Zhang, Y.
Deposit date:2017-07-28
Release date:2018-08-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:BRD4 Profiling Identifies Critical Chronic Lymphocytic Leukemia Oncogenic Circuits and Reveals Sensitivity to PLX51107, a Novel Structurally Distinct BET Inhibitor.
Cancer Discov, 8, 2018
5WMA
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BU of 5wma by Molmil
N-terminal bromodomain of BRD4 in complex with PLX5981
Descriptor: 1,2-ETHANEDIOL, 5-(3,5-dimethyl-1,2-oxazol-4-yl)-1H-pyrrolo[2,3-b]pyridine, Bromodomain-containing protein 4
Authors:Zhang, Y.
Deposit date:2017-07-28
Release date:2018-08-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:BRD4 Profiling Identifies Critical Chronic Lymphocytic Leukemia Oncogenic Circuits and Reveals Sensitivity to PLX51107, a Novel Structurally Distinct BET Inhibitor.
Cancer Discov, 8, 2018
4KMD
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BU of 4kmd by Molmil
Crystal structure of Sufud60-Gli1p
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCEROL, Sufu, ...
Authors:Zhang, Y, Qi, X, Zhang, Z, Wu, G.
Deposit date:2013-05-08
Release date:2013-11-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insight into the mutual recognition and regulation between Suppressor of Fused and Gli/Ci.
Nat Commun, 4, 2013
8H97
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BU of 8h97 by Molmil
GH86 agarase Aga86A_Wa
Descriptor: Beta-agarase, CALCIUM ION, HEXAETHYLENE GLYCOL
Authors:Zhang, Y.Y, Dong, S, Feng, Y.G, Chang, Y.G.
Deposit date:2022-10-25
Release date:2023-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Structural characterization on a beta-agarase Aga86A_Wa from Wenyingzhuangia aestuarii reveals the prevalent methyl-galactose accommodation capacity of GH86 enzymes at subsite -1.
Carbohydr Polym, 306, 2023
6E83
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BU of 6e83 by Molmil
Solution structure of ZZZ3 ZZ domain in complex with histone H3 tail
Descriptor: Histone H3, ZINC ION, ZZ-type zinc finger-containing protein 3
Authors:Zhang, Y, Kutateladze, T.G.
Deposit date:2018-07-27
Release date:2018-09-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation.
Nat Commun, 9, 2018
1FBD
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BU of 1fbd by Molmil
CRYSTALLOGRAPHIC STUDIES OF THE CATALYTIC MECHANISM OF THE NEUTRAL FORM OF FRUCTOSE-1,6-BISPHOSPHATASE
Descriptor: 2,5-anhydro-1,6-di-O-phosphono-D-glucitol, FRUCTOSE 1,6-BISPHOSPHATASE, MANGANESE (II) ION
Authors:Zhang, Y, Liang, J.-Y, Huang, S, Ke, H, Lipscomb, W.N.
Deposit date:1992-10-16
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystallographic studies of the catalytic mechanism of the neutral form of fructose-1,6-bisphosphatase.
Biochemistry, 32, 1993
1FTA
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BU of 1fta by Molmil
FRUCTOSE-1,6-BISPHOSPHATASE(D-FRUCTOSE-1,6-BISPHOSPHATE, 1-PHOSPHOHYDROLASE) (E.C.3.1.3.11) COMPLEXED WITH THE ALLOSTERIC INHIBITOR AMP
Descriptor: ADENOSINE MONOPHOSPHATE, FRUCTOSE-1,6-BISPHOSPHATASE
Authors:Zhang, Y, Liang, J.-Y, Huang, S, Lipscomb, W.N.
Deposit date:1993-09-27
Release date:1995-11-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The allosteric site of human liver fructose-1,6-bisphosphatase. Analysis of six AMP site mutants based on the crystal structure.
J.Biol.Chem., 269, 1994
6DS6
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BU of 6ds6 by Molmil
Crystal structure of p300 ZZ domain in complex with histone H3 peptide
Descriptor: CHLORIDE ION, Histone H3 peptide-Histone acetyltransferase p300 Chimeric protein, ZINC ION
Authors:Zhang, Y, Kutateladze, T.G.
Deposit date:2018-06-13
Release date:2018-08-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The ZZ domain of p300 mediates specificity of the adjacent HAT domain for histone H3.
Nat. Struct. Mol. Biol., 25, 2018
6UTU
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BU of 6utu by Molmil
Crystal structure of minor pseudopilin ternary complex of XcpVWX from the Type 2 secretion system of Pseudomonas aeruginosa in the P3 space group
Descriptor: CALCIUM ION, Type II secretion system protein I, Type II secretion system protein J, ...
Authors:Zhang, Y, Wang, S, Jia, Z.
Deposit date:2019-10-30
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:In Situ Proteolysis Condition-Induced Crystallization of the XcpVWX Complex in Different Lattices.
Int J Mol Sci, 21, 2020

221716

數據於2024-06-26公開中

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