5ZFU
 
 | | Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM) | | 分子名称: | 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB | | 著者 | Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S. | | 登録日 | 2018-03-07 | | 公開日 | 2018-05-09 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (6.7 Å) | | 主引用文献 | Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
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1UCU
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5ZFV
 | | Structure of the ExbB/ExbD pentameric complex (ExbB5ExbD1TM) | | 分子名称: | 22-mer peptide from Biopolymer transport protein ExbD, Biopolymer transport protein ExbB | | 著者 | Yonekura, K, Yamashita, Y, Matsuoka, R, Maki-Yonekura, S. | | 登録日 | 2018-03-07 | | 公開日 | 2018-05-09 | | 実験手法 | ELECTRON MICROSCOPY (7.1 Å) | | 主引用文献 | Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
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6JNU
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3J7T
 | | Calcium atpase structure with two bound calcium ions determined by electron crystallography of thin 3D crystals | | 分子名称: | CALCIUM ION, SODIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | | 著者 | Yonekura, K, Kato, K, Ogasawara, M, Tomita, M, Toyoshima, C. | | 登録日 | 2014-08-07 | | 公開日 | 2015-02-18 | | 最終更新日 | 2016-09-28 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (3.4 Å) | | 主引用文献 | Electron crystallography of ultrathin 3D protein crystals: atomic model with charges
Proc.Natl.Acad.Sci.USA, 112, 2015
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5GKN
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6JNT
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7VI4
 | | Electron crystallographic structure of TIA-1 prion-like domain, A381T mutant | | 分子名称: | TIA-1 prion-like domain | | 著者 | Takaba, K, Maki-Yonekura, S, Sekiyama, N, Imamura, K, Kodama, T, Tochio, H, Yonekura, K. | | 登録日 | 2021-09-24 | | 公開日 | 2022-09-28 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (0.95 Å) | | 主引用文献 | ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures.
Proc.Natl.Acad.Sci.USA, 119, 2022
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7VI5
 | | Electron crystallographic structure of TIA-1 prion-like domain, wild type sequence | | 分子名称: | TIA-1 prion-like domain | | 著者 | Takaba, K, Maki-Yonekura, S, Sekiyama, N, Imamura, K, Kodama, T, Tochio, H, Yonekura, K. | | 登録日 | 2021-09-24 | | 公開日 | 2022-09-28 | | 最終更新日 | 2023-11-29 | | 実験手法 | ELECTRON CRYSTALLOGRAPHY (1.761 Å) | | 主引用文献 | ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures.
Proc.Natl.Acad.Sci.USA, 119, 2022
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5ZFP
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8WEY
 | | PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137) | | 分子名称: | (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, ... | | 著者 | Kato, K, Hamaguchi, T, Nakajima, Y, Kawakami, K, Yonekura, K, Shen, J.R, Nagao, R. | | 登録日 | 2023-09-19 | | 公開日 | 2024-02-14 | | 最終更新日 | 2024-03-13 | | 実験手法 | ELECTRON MICROSCOPY (1.92 Å) | | 主引用文献 | The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs.
Proc.Natl.Acad.Sci.USA, 121, 2024
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3VU3
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8J5A
 | | Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A) | | 分子名称: | Ferritin heavy chain, SODIUM ION | | 著者 | Kawakami, K, Maki-Yonekura, S, Hamaguchi, T, Takaba, K, Yonekura, K. | | 登録日 | 2023-04-21 | | 公開日 | 2023-07-12 | | 実験手法 | ELECTRON MICROSCOPY (1.19 Å) | | 主引用文献 | Measurement of charges and chemical bonding in a cryo-EM structure.
Commun Chem, 6, 2023
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7Y3F
 | | Structure of the Anabaena PSI-monomer-IsiA supercomplex | | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | | 著者 | Nagao, R, Kato, K, Hamaguchi, T, Kawakami, K, Yonekura, K, Shen, J.R. | | 登録日 | 2022-06-10 | | 公開日 | 2023-03-01 | | 最終更新日 | 2024-05-08 | | 実験手法 | ELECTRON MICROSCOPY (2.62 Å) | | 主引用文献 | Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120.
Nat Commun, 14, 2023
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3A5X
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7DI8
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7CHK
 | | Cryo-EM Structure of Apple Latent Spherical Virus (ALSV) | | 分子名称: | VP20 protein, VP24 protein, VP25 protein | | 著者 | Naitow, H, Hamaguchi, T, Maki-Yonekura, S, Isogai, M, Yoshikawa, N, Yonekura, K. | | 登録日 | 2020-07-06 | | 公開日 | 2020-11-04 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (2.87 Å) | | 主引用文献 | Apple latent spherical virus structure with stable capsid frame supports quasi-stable protrusions expediting genome release.
Commun Biol, 3, 2020
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7VEB
 | | Phycocyanin rod structure of cyanobacterial phycobilisome | | 分子名称: | C-phycocyanin alpha subunit, C-phycocyanin beta subunit, PHYCOCYANOBILIN, ... | | 著者 | Kawakami, K, Hamaguchi, T, Hirose, Y, Kosumi, D, Miyata, M, Kamiya, N, Yonekura, K. | | 登録日 | 2021-09-08 | | 公開日 | 2022-06-15 | | 最終更新日 | 2022-08-17 | | 実験手法 | ELECTRON MICROSCOPY (4.2 Å) | | 主引用文献 | Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome.
Nat Commun, 13, 2022
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7VEA
 | | Pentacylindrical allophycocyanin core from Thermosynechococcus vulcanus | | 分子名称: | Allophycocyanin alpha chain, Allophycocyanin beta chain, PHYCOCYANOBILIN, ... | | 著者 | Kawakami, K, Hamaguchi, T, Hirose, Y, Kosumi, D, Miyata, M, Kamiya, N, Yonekura, K. | | 登録日 | 2021-09-08 | | 公開日 | 2022-06-22 | | 最終更新日 | 2022-08-17 | | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | | 主引用文献 | Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome.
Nat Commun, 13, 2022
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7COY
 | | Structure of the far-red light utilizing photosystem I of Acaryochloris marina | | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, CHLOROPHYLL D, ... | | 著者 | Kawakami, K, Yonekura, K, Hamaguchi, T, Kashino, Y, Shinzawa-Itoh, K, Inoue-Kashino, N, Itoh, S, Ifuku, K, Yamashita, E. | | 登録日 | 2020-08-05 | | 公開日 | 2021-03-31 | | 最終更新日 | 2021-05-05 | | 実験手法 | ELECTRON MICROSCOPY (2.5 Å) | | 主引用文献 | Structure of the far-red light utilizing photosystem I of Acaryochloris marina.
Nat Commun, 12, 2021
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7EBC
 | | Crystal structure of Isocitrate lyase-1 from Saccaromyces cervisiae | | 分子名称: | Isocitrate lyase, MAGNESIUM ION, TETRAETHYLENE GLYCOL | | 著者 | Hiragi, K, Nishio, K, Moriyama, S, Hamaguchi, T, Mizoguchi, A, Yonekura, K, Tani, K, Mizushima, T. | | 登録日 | 2021-03-09 | | 公開日 | 2021-06-23 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structural insights into the targeting specificity of ubiquitin ligase for S. cerevisiae isocitrate lyase but not C. albicans isocitrate lyase.
J.Struct.Biol., 213, 2021
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7EBF
 | | Cryo-EM structure of Isocitrate lyase-1 from Candida albicans | | 分子名称: | Isocitrate lyase | | 著者 | Hiragi, K, Nishio, K, Moriyama, S, Hamaguchi, T, Mizoguchi, A, Yonekura, K, Tani, K, Mizushima, T. | | 登録日 | 2021-03-09 | | 公開日 | 2021-06-23 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (2.63 Å) | | 主引用文献 | Structural insights into the targeting specificity of ubiquitin ligase for S. cerevisiae isocitrate lyase but not C. albicans isocitrate lyase.
J.Struct.Biol., 213, 2021
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7EBE
 | | Crystal structure of Isocitrate lyase-1 from Candida albicans | | 分子名称: | FORMIC ACID, Isocitrate lyase, MAGNESIUM ION | | 著者 | Hiragi, K, Nishio, K, Moriyama, S, Hamaguchi, T, Mizoguchi, A, Yonekura, K, Tani, K, Mizushima, T. | | 登録日 | 2021-03-09 | | 公開日 | 2021-06-23 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.69 Å) | | 主引用文献 | Structural insights into the targeting specificity of ubiquitin ligase for S. cerevisiae isocitrate lyase but not C. albicans isocitrate lyase.
J.Struct.Biol., 213, 2021
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6JJM
 | | Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to the oligosaccharide portion of the GM2 ganglioside | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, ... | | 著者 | Kubota, M, Matsuoka, R, Suzuki, T, Yonekura, K, Yanagi, Y, Hashiguchi, T. | | 登録日 | 2019-02-26 | | 公開日 | 2019-05-22 | | 最終更新日 | 2020-07-29 | | 実験手法 | X-RAY DIFFRACTION (2.049 Å) | | 主引用文献 | Molecular Mechanism of the Flexible Glycan Receptor Recognition by Mumps Virus.
J.Virol., 93, 2019
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6JJN
 | | Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to sialyl lewisX | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, ... | | 著者 | Kubota, M, Matsuoka, R, Suzuki, T, Yonekura, K, Yanagi, Y, Hashiguchi, T. | | 登録日 | 2019-02-26 | | 公開日 | 2019-05-22 | | 最終更新日 | 2020-07-29 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Molecular Mechanism of the Flexible Glycan Receptor Recognition by Mumps Virus.
J.Virol., 93, 2019
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