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PDB: 142 results

7Q4N
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transcription factor CDX2 bound to hydroxymethylated DNA
Descriptor: DNA (18-MER), Homeobox protein CDX-2
Authors:Morgunova, E, Yin, Y, Popov, A, Taipale, J.
Deposit date:2021-11-01
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:transcription factor CDX2 bound to hydroxymethylated DNA
To Be Published
5I9F
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BU of 5i9f by Molmil
Crystal structure of designed pentatricopeptide repeat protein dPPR-U10 in complex with its target RNA U10
Descriptor: RNA (5'-R(*GP*GP*GP*GP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*CP*CP*CP*C)-3'), pentatricopeptide repeat protein dPPR-U10
Authors:Shen, C, Zhang, D, Guan, Z, Zou, T, Yin, Y.
Deposit date:2016-02-20
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.
Nat Commun, 7, 2016
8EW6
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BU of 8ew6 by Molmil
Anti-human CD8 VHH complex with CD8 alpha
Descriptor: Anti-CD8 alpha VHH, T-cell surface glycoprotein CD8 alpha chain
Authors:Kiefer, J.R, Williams, S, Davies, C.W, Koerber, J.T, Sriraman, S.K, Yin, Y.P.
Deposit date:2022-10-21
Release date:2022-11-23
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Development of an 18 F-labeled anti-human CD8 VHH for same-day immunoPET imaging.
Eur J Nucl Med Mol Imaging, 50, 2023
5NO6
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BU of 5no6 by Molmil
TEAD4-HOXB13 complex bound to DNA
Descriptor: DNA, Homeobox protein Hox-B13, Transcriptional enhancer factor TEF-3
Authors:Morgunova, E, Jolma, A, Yin, Y, Popov, A, Taipale, J.
Deposit date:2017-04-11
Release date:2018-05-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:TEAD4-HOXB13 complex bound to DNA
To Be Published
8UDL
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BU of 8udl by Molmil
Human Mitochondrial DNA Polymerase Gamma Binary Complex
Descriptor: DNA (5'-D(P*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*C)-3'), DNA (5'-D(P*AP*GP*GP*TP*AP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*T)-3'), DNA polymerase subunit gamma-1, ...
Authors:Park, J, Yin, Y.W.
Deposit date:2023-09-28
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:An interaction network in the polymerase active site is a prerequisite for Watson-Crick base pairing in Pol gamma.
Sci Adv, 10, 2024
8PN4
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transcription factor BARHL2 bound to DNA sequences
Descriptor: ACETATE ION, BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Yin, Y, Popov, A, Taipale, J.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
8PM5
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BU of 8pm5 by Molmil
transcription factor BARHL2 bound to TAAAT DNA sequence
Descriptor: BarH-like 2 homeobox protein, DNA (5'-D(*AP*AP*CP*CP*AP*TP*TP*TP*AP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*AP*AP*AP*TP*GP*GP*TP*T)-3')
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-28
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
5TDH
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BU of 5tdh by Molmil
The crystal structure of the dominant negative mutant G protein alpha(i)-1-beta-1-gamma-2 G203A/A326S
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Liu, P, Jia, M.-Z, Zhou, X.E, de Waal, P.W, Dickson, B.M, Liu, B, Hou, L, Yin, Y.-T, Kang, Y.-Y, Shi, Y, Melcher, K, Xu, H.E, Jiang, Y.
Deposit date:2016-09-19
Release date:2016-11-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structural basis of the dominant negative phenotype of the G alpha i1 beta 1 gamma 2 G203A/A326S heterotrimer
Acta Pharmacol.Sin., 37, 2016
7Z5I
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BU of 7z5i by Molmil
Transcription factor MYF5 bound to symmetrical site
Descriptor: DNA (5'-D(P*AP*CP*GP*CP*GP*TP*CP*AP*GP*CP*TP*GP*AP*CP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*CP*GP*TP*CP*AP*GP*CP*TP*GP*AP*CP*GP*CP*GP*T)-3'), Myogenic factor 5
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2022-03-09
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Transcription factor MYF5 bound to symmetrical site
To Be Published
7Z5K
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BU of 7z5k by Molmil
Transcription factor MYF5 bound to non-symmetrical site
Descriptor: DNA (5'-D(P*AP*CP*GP*CP*GP*TP*CP*AP*GP*CP*TP*GP*TP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*CP*AP*AP*CP*AP*GP*CP*TP*GP*AP*CP*GP*CP*GP*T)-3'), Myogenic factor 5
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2022-03-09
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Transcription factor MYF5 bound to non-symmetrical site
To Be Published
1O8T
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BU of 1o8t by Molmil
Global Structure and Dynamics of Human Apolipoprotein CII in Complex with Micelles: Evidence for increased mobility of the helix involved in the activation of lipoprotein lipase
Descriptor: APOLIPOPROTEIN C-II
Authors:Zdunek, J, Martinez, G.V, Schleucher, J, Lycksell, P.O, Yin, Y, Nilsson, S, Shen, Y, Olivecrona, G, Wijmenga, S.
Deposit date:2002-11-29
Release date:2003-02-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Global Structure and Dynamics of Human Apolipoprotein Cii in Complex with Micelles: Evidence for Increased Mobility of the Helix Involved in the Activation of Lipoprotein Lipase
Biochemistry, 42, 2003
8EQB
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BU of 8eqb by Molmil
FAM46C/BCCIPalpha/Nanobody complex
Descriptor: Isoform 2 of BRCA2 and CDKN1A-interacting protein, Synthetic nanobody 1, Terminal nucleotidyltransferase 5C
Authors:Liu, S, Chen, H, Yin, Y, Bai, X, Zhang, X.
Deposit date:2022-10-07
Release date:2023-03-15
Last modified:2023-04-26
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Inhibition of FAM46/TENT5 activity by BCCIP alpha adopting a unique fold.
Sci Adv, 9, 2023
8PE9
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BU of 8pe9 by Molmil
Complex between DDR1 DS-like domain and PRTH-101 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Liu, J, Chiang, H, Xiong, W, Laurent, V, Griffiths, S.C, Duelfer, J, Deng, H, Sun, X, Yin, Y.W, Li, W, Audoly, L.P, An, Z, Schuerpf, T, Li, R, Zhang, N.
Deposit date:2023-06-13
Release date:2023-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.152 Å)
Cite:A highly selective humanized DDR1 mAb reverses immune exclusion by disrupting collagen fiber alignment in breast cancer.
J Immunother Cancer, 11, 2023
8PMF
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BU of 8pmf by Molmil
transcription factor BARHL2 bound to DNA sequences
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-28
Release date:2024-07-10
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
8PMN
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BU of 8pmn by Molmil
transcription factor BARHL2 bound to DNA sequences
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
8PM7
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BU of 8pm7 by Molmil
transcription factor BARHL2 bound to TAATC DNA sequence
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-28
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
8PNA
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BU of 8pna by Molmil
transcription factor BARHL2 bound to TAATG DNA sequence
Descriptor: ACETATE ION, BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-30
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:transcription factor BARHL2 bound to different DNA sequences
To Be Published
8PMC
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BU of 8pmc by Molmil
transcription factor BARHL2 bound to TAATT DNA sequence
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-28
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
8PNC
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BU of 8pnc by Molmil
Transcription factor BARHL2 bound to TAAGT DNA sequence
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-30
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Transcription factor BARHL2 bound to different DNA sequences
To Be Published
8PMV
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BU of 8pmv by Molmil
transcription factor BARHL2 bound to TAAGC DNA sequence
Descriptor: BarH-like 2 homeobox protein, DNA
Authors:Morgunova, E, Popov, A, Yin, Y, Taipale, J.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:transcription factor BARHL2 bound to DNA sequences
To Be Published
5GWN
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BU of 5gwn by Molmil
Crystal structure of human RCC2
Descriptor: Protein RCC2, SULFATE ION
Authors:Liang, L, Yun, C.H, Yin, Y.X.
Deposit date:2016-09-12
Release date:2017-09-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.309 Å)
Cite:RCC2 is a novel p53 target in suppressing metastasis.
Oncogene, 37, 2018
8SWK
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BU of 8swk by Molmil
Cryo-EM structure of NLRP3 closed hexamer
Descriptor: 1-[4-(2-oxidanylpropan-2-yl)furan-2-yl]sulfonyl-3-(1,2,3,5-tetrahydro-s-indacen-4-yl)urea, ADENOSINE-5'-TRIPHOSPHATE, NACHT, ...
Authors:Yu, X, Matico, R.E, Miller, R, Schoubroeck, B.V, Grauwen, K, Suarez, J, Pietrak, B, Haloi, N, Yin, Y, Tresadern, G.J, Perez-Benito, L, Lindahl, E, Bottelbergs, A, Oehlrich, D, Opdenbosch, N.V, Sharma, S.
Deposit date:2023-05-18
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (4.32 Å)
Cite:Cryo-EM structures of NLRP3 reveal its self-activation mechanism
Nat Commun, 2024
8SXN
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Structure of NLRP3 and NEK7 complex
Descriptor: 1-[4-(2-oxidanylpropan-2-yl)furan-2-yl]sulfonyl-3-(1,2,3,5-tetrahydro-s-indacen-4-yl)urea, ADENOSINE-5'-TRIPHOSPHATE, NACHT, ...
Authors:Yu, X, Matico, R.E, Miller, R, Schoubroeck, B.V, Grauwen, K, Suarez, J, Pietrak, B, Haloi, N, Yin, Y, Tresadern, G.J, Perez-Benito, L, Lindahl, E, Bottelbergs, A, Oehlrich, D, Opdenbosch, N.V, Sharma, S.
Deposit date:2023-05-22
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Cryo-EM structures of NLRP3 reveal its self-activation mechanism
Nat Commun, 2024
8SWF
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BU of 8swf by Molmil
Cryo-EM structure of NLRP3 open octamer
Descriptor: NACHT, LRR and PYD domains-containing protein 3
Authors:Yu, X, Matico, R.E, Miller, R, Schoubroeck, B.V, Grauwen, K, Suarez, J, Pietrak, B, Haloi, N, Yin, Y, Tresadern, G.J, Perez-Benito, L, Lindahl, E, Bottelbergs, A, Oehlrich, D, Opdenbosch, N.V, Sharma, S.
Deposit date:2023-05-18
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Cryo-EM structures of NLRP3 reveal its self-activation mechanism
Nat Commun, 2024
3IKL
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BU of 3ikl by Molmil
Crystal structure of Pol gB delta-I4.
Descriptor: DNA polymerase subunit gamma-2, mitochondrial
Authors:Lee, Y.S, Kennedy, W.D, Yin, Y.W.
Deposit date:2009-08-06
Release date:2010-08-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations.
Cell(Cambridge,Mass.), 139, 2009

224004

數據於2024-08-21公開中

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