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PDB: 317 results

6L7E
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BU of 6l7e by Molmil
Toxin Complex TcdA1-TcdB1-TccC2
Descriptor: TcdA1
Authors:Yan, Z.F, Yang, G.W.
Deposit date:2019-11-01
Release date:2020-11-04
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Toxin Complex TcdA1-TcdB1-TccC2
To Be Published
6L7I
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BU of 6l7i by Molmil
Signal substraction of TcdB1-TccC2 and part of TcdA1
Descriptor: TccC2, TcdA1, TcdB1
Authors:Yan, Z.F, Yang, G.W.
Deposit date:2019-11-01
Release date:2021-03-31
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Signal substraction of TcdB1-TccC2 and part of TcdA1
To Be Published
3J8H
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BU of 3j8h by Molmil
Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A, Ryanodine receptor 1, ZINC ION
Authors:Yan, Z, Bai, X, Yan, C, Wu, J, Scheres, S.H.W, Shi, Y, Yan, N.
Deposit date:2014-10-26
Release date:2014-12-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.
Nature, 517, 2015
5XSY
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BU of 5xsy by Molmil
Structure of the Nav1.4-beta1 complex from electric eel
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein, Voltage-gated sodium channel beta subunit 1, ...
Authors:Yan, Z, Zhou, Q, Wu, J.P, Yan, N.
Deposit date:2017-06-15
Release date:2017-08-09
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of the Nav1.4-beta 1 Complex from Electric Eel.
Cell, 170, 2017
8HHK
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BU of 8hhk by Molmil
Crystal structure of a triple-helix region of human collagen type III
Descriptor: PRO-HYP-GLY-PRO-HYP-GLY-PRO-HYP-GLY-PHE-ASP-GLY-ARG-ASN-GLY-GLU-LYS-GLY, SULFATE ION
Authors:Yan, Z.C, Zhang, D, Qin, B.
Deposit date:2022-11-16
Release date:2023-01-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a triple-helix region of human collagen type III
To Be Published
8HHI
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BU of 8hhi by Molmil
Crystal structure of a triple-helix region of human collagen type III
Descriptor: human collagen type III
Authors:Yan, Z.C, Zhang, D, Qin, B.
Deposit date:2022-11-16
Release date:2023-01-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a triple-helix region of human collagen type III
To Be Published
5WQ9
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BU of 5wq9 by Molmil
CryoEM structure of type II secretion system secretin GspD G453A mutant in Vibrio cholerae
Descriptor: Type II secretion system protein D
Authors:Yan, Z, Yin, M, Li, X.
Deposit date:2016-11-23
Release date:2016-12-28
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.22 Å)
Cite:Structural insights into the secretin translocation channel in the type II secretion system
Nat. Struct. Mol. Biol., 24, 2017
5WQ8
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BU of 5wq8 by Molmil
CryoEM structure of type II secretion system secretin GspD in Vibrio cholerae
Descriptor: Type II secretion system protein D
Authors:Yan, Z, Yin, M, Li, X.
Deposit date:2016-11-23
Release date:2016-12-28
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural insights into the secretin translocation channel in the type II secretion system
Nat. Struct. Mol. Biol., 24, 2017
5WQ7
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BU of 5wq7 by Molmil
CryoEM structure of type II secretion system secretin GspD in E.coli K12
Descriptor: Putative type II secretion system protein D
Authors:Yan, Z, Yin, M, Li, X.
Deposit date:2016-11-23
Release date:2016-12-28
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structural insights into the secretin translocation channel in the type II secretion system
Nat. Struct. Mol. Biol., 24, 2017
5EZ6
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BU of 5ez6 by Molmil
Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Transforming protein RhoA
Authors:Yan, Z, Ma, S, Zhang, Y, Ma, L, Wang, F, Li, J, Miao, L.
Deposit date:2015-11-26
Release date:2016-12-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA
To Be Published
9JX5
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BU of 9jx5 by Molmil
Solution NMR structure of the 1:1 complex of NOP56 intronic G-quadruplex bound with pyridostatin
Descriptor: 4-(2-azanylethoxy)-N2,N6-bis[4-(2-azanylethoxy)quinolin-2-yl]pyridine-2,6-dicarboxamide, DNA (5'-D(*GP*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*GP*GP*G)-3')
Authors:Yan, Z, Wan, L, Guo, P, Han, D.
Deposit date:2024-10-11
Release date:2025-02-05
Last modified:2025-05-07
Method:SOLUTION NMR
Cite:Structural Insights into an Antiparallel Chair-Type G-Quadruplex From the Intron of NOP56 Oncogene.
Adv Sci, 12, 2025
5EWT
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BU of 5ewt by Molmil
Crystal structure of ExoIII endonuclease from Sulfolobus islandicus
Descriptor: Exodeoxyribonuclease III Xth
Authors:Yan, Z, Yuan, Z.L, Gu, L.C, Shen, Y.L.
Deposit date:2015-11-21
Release date:2016-11-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ExoIII endonuclease from Sulfolobus islandicus
To Be Published
6L7A
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BU of 6l7a by Molmil
CsgFG complex in Curli biogenesis system
Descriptor: CsgF, Curli production assembly/transport protein CsgG
Authors:Yan, Z.F, Yin, M, Chen, J.N, Li, X.M.
Deposit date:2019-11-01
Release date:2020-01-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Assembly and substrate recognition of curli biogenesis system.
Nat Commun, 11, 2020
5B48
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BU of 5b48 by Molmil
2-Oxoacid:Ferredoxin Oxidoreductase 1 from Sulfolobus tokodai
Descriptor: 2-[(2E)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-(1-oxidanylpropylidene)-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate, 2-oxoacid--ferredoxin oxidoreductase alpha subunit, 2-oxoacid--ferredoxin oxidoreductase beta subunit, ...
Authors:Yan, Z, Maruyama, A, Arakawa, T, Fushinobu, S, Wakagi, T.
Deposit date:2016-04-01
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of archaeal 2-oxoacid:ferredoxin oxidoreductases from Sulfolobus tokodaii
Sci Rep, 6, 2016
8XGP
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BU of 8xgp by Molmil
Solution NMR structure of an antiparallel chair-type G-quadruplex from NOP56 intron
Descriptor: DNA (5'-D(*GP*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*GP*GP*G)-3')
Authors:Yan, Z, Guo, P, Han, D.
Deposit date:2023-12-15
Release date:2025-02-05
Last modified:2025-05-07
Method:SOLUTION NMR
Cite:Structural Insights into an Antiparallel Chair-Type G-Quadruplex From the Intron of NOP56 Oncogene.
Adv Sci, 12, 2025
5B47
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BU of 5b47 by Molmil
2-Oxoacid:Ferredoxin Oxidoreductase 2 from Sulfolobus tokodai - pyruvate complex
Descriptor: 2-oxoacid--ferredoxin oxidoreductase alpha subunit, 2-oxoacid--ferredoxin oxidoreductase beta subunit, IRON/SULFUR CLUSTER, ...
Authors:Yan, Z, Maruyama, A, Arakawa, T, Fushinobu, S, Wakagi, T.
Deposit date:2016-04-01
Release date:2016-09-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of archaeal 2-oxoacid:ferredoxin oxidoreductases from Sulfolobus tokodaii
Sci Rep, 6, 2016
5B46
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BU of 5b46 by Molmil
2-Oxoacid:Ferredoxin Oxidoreductase 2 from Sulfolobus tokodai - ligand free form
Descriptor: 2-oxoacid--ferredoxin oxidoreductase alpha subunit, 2-oxoacid--ferredoxin oxidoreductase beta subunit, IRON/SULFUR CLUSTER, ...
Authors:Yan, Z, Maruyama, A, Arakawa, T, Fushinobu, S, Wakagi, T.
Deposit date:2016-04-01
Release date:2016-09-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of archaeal 2-oxoacid:ferredoxin oxidoreductases from Sulfolobus tokodaii
Sci Rep, 6, 2016
8K6Q
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BU of 8k6q by Molmil
Crystal structure of HOIL-1L LTM domain
Descriptor: RanBP-type and C3HC4-type zinc finger-containing protein 1
Authors:Yan, Z, Pan, L.F.
Deposit date:2023-07-25
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Mechanistic insights into the homo-dimerization of HOIL-1L and SHARPIN.
Biochem.Biophys.Res.Commun., 689, 2023
6L7C
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BU of 6l7c by Molmil
CsgFG complex with substrate CsgAN6 peptide in Curli biogenesis system
Descriptor: CsgF, Curli production assembly/transport protein CsgG, Major curlin subunit CsgA
Authors:Yan, Z.F, Yin, M, Chen, J.N, Li, X.M.
Deposit date:2019-11-01
Release date:2020-01-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Assembly and substrate recognition of curli biogenesis system.
Nat Commun, 11, 2020
7CXR
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BU of 7cxr by Molmil
Cryo-EM structure of human TMEM120A/TACAN
Descriptor: MCherry fluorescent protein,Ion channel TACAN
Authors:Yan, Z, Wu, J, Ke, M.
Deposit date:2020-09-02
Release date:2021-09-01
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of human TMEM120A and TMEM120B.
Cell Discov, 7, 2021
8K6P
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BU of 8k6p by Molmil
Crystal structure of SHARPIN LTM motif
Descriptor: Sharpin
Authors:Yan, Z, Pan, L.F.
Deposit date:2023-07-25
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Mechanistic insights into the homo-dimerization of HOIL-1L and SHARPIN.
Biochem.Biophys.Res.Commun., 689, 2023
5YKO
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BU of 5yko by Molmil
Crystal structure of Arabidopsis thaliana JMJ14 catalytic domain in complex with NOG and H3K4me3 peptide
Descriptor: H3(1-10)K4me3 peptide, N-OXALYLGLYCINE, NICKEL (II) ION, ...
Authors:Yang, Z, Du, J.
Deposit date:2017-10-15
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
5YKN
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BU of 5ykn by Molmil
crystal structure of Arabidopsis thaliana JMJ14 catalytic domain
Descriptor: NICKEL (II) ION, Probable lysine-specific demethylase JMJ14, ZINC ION
Authors:Yang, Z, Du, J.
Deposit date:2017-10-15
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
Plant Cell, 30, 2018
9IXY
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BU of 9ixy by Molmil
Human KCNQ2-CaM-Ebio2 Complex in the Presence of PIP2
Descriptor: Calmodulin-3, Isoform 3 of Potassium voltage-gated channel subfamily KQT member 2, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate, ...
Authors:Yang, Z, Guo, J.
Deposit date:2024-07-29
Release date:2025-03-19
Last modified:2025-08-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Small molecule inhibits KCNQ channels with a non-blocking mechanism.
Nat.Chem.Biol., 21, 2025
9IXZ
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BU of 9ixz by Molmil
human KCNQ2-CaM-Ebio3 Complex in the Presence of PIP2
Descriptor: Calmodulin-1, Isoform 3 of Potassium voltage-gated channel subfamily KQT member 2, ~{N}-[7-[bis(fluoranyl)methoxy]-1-prop-2-ynyl-indazol-3-yl]-2-propyl-pentanamide
Authors:Yang, Z, Guo, J.
Deposit date:2024-07-29
Release date:2025-03-19
Last modified:2025-08-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Small molecule inhibits KCNQ channels with a non-blocking mechanism.
Nat.Chem.Biol., 21, 2025

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