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PDB: 546 results

3BTX
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BU of 3btx by Molmil
X-ray structure of human ABH2 bound to dsDNA through active site cross-linking
Descriptor: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*DTP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DAP*DTP*DAP*DCP*DA)-3'), ...
Authors:Yang, C.-G, Yi, C, He, C.
Deposit date:2007-12-31
Release date:2008-04-22
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.
Nature, 452, 2008
3BU0
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BU of 3bu0 by Molmil
crystal structure of human ABH2 cross-linked to dsDNA with cofactors
Descriptor: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, DNA (5'-D(*CP*TP*GP*TP*AP*TP*(2YR)P*AP*TP*TP*GP*CP*G)-3'), ...
Authors:Yang, C.-G, Yi, C, He, C.
Deposit date:2007-12-31
Release date:2008-04-22
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.
Nature, 452, 2008
5WYO
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BU of 5wyo by Molmil
Solution structure of E.coli HdeA
Descriptor: Acid stress chaperone HdeA
Authors:Yang, C, Hu, Y, Jin, C.
Deposit date:2017-01-14
Release date:2017-11-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Characterizations of the Interactions between Escherichia coli Periplasmic Chaperone HdeA and Its Native Substrates during Acid Stress
Biochemistry, 56, 2017
6AKW
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BU of 6akw by Molmil
Crystal structure of RNA dioxygenase bound with an inhibitor
Descriptor: 2-OXOGLUTARIC ACID, 2-[[2,6-bis(chloranyl)-4-(3,5-dimethyl-1,2-oxazol-4-yl)phenyl]amino]benzoic acid, Alpha-ketoglutarate-dependent dioxygenase FTO
Authors:Yang, C.-G, Huang, Y, Gan, J.
Deposit date:2018-09-04
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Small-Molecule Targeting of Oncogenic FTO Demethylase in Acute Myeloid Leukemia.
Cancer Cell, 35, 2019
8HGK
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BU of 8hgk by Molmil
Crystal structure of human ClpP in complex with ZK53
Descriptor: 4-[[3,5-bis(fluoranyl)phenyl]methyl]-N-[(4-bromophenyl)methyl]piperazine-1-carboxamide, ATP-dependent Clp protease proteolytic subunit, mitochondrial, ...
Authors:Yang, C.-G, Gan, J.H, Zhou, L.-L.
Deposit date:2022-11-14
Release date:2023-09-27
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Selective activator of human ClpP triggers cell cycle arrest to inhibit lung squamous cell carcinoma.
Nat Commun, 14, 2023
5ZF2
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BU of 5zf2 by Molmil
Crystal structure of Trxlp from Edwardsiella tarda EIB202
Descriptor: SULFATE ION, Thioredoxin (H-type,TRX-H)
Authors:Yang, C, Quan, S.
Deposit date:2018-03-02
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:The Edwardsiella piscicida thioredoxin-like protein inhibits ASK1-MAPKs signaling cascades to promote pathogenesis during infection.
Plos Pathog., 15, 2019
6K5K
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BU of 6k5k by Molmil
Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.
Descriptor: 2'-DEOXYURIDINE, PHOSPHATE ION, Uridine phosphorylase
Authors:Yang, C.C, Zhang, X.G.
Deposit date:2019-05-29
Release date:2019-06-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici.
Sci Rep, 10, 2020
6K5G
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BU of 6k5g by Molmil
Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici
Descriptor: GLYCEROL, Uridine phosphorylase
Authors:Yang, C.C, Zhang, X.G.
Deposit date:2019-05-28
Release date:2019-06-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.574 Å)
Cite:Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici.
Sci Rep, 10, 2020
6K8P
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BU of 6k8p by Molmil
Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.
Descriptor: 1-O-phosphono-alpha-D-ribofuranose, PHOSPHATE ION, THYMIDINE, ...
Authors:Yang, C.C, Zhang, X.G.
Deposit date:2019-06-13
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.965 Å)
Cite:Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici.
Sci Rep, 10, 2020
5ZYT
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BU of 5zyt by Molmil
Crystal structure of human MGME1 with 3' overhang double strand DNA3
Descriptor: DNA (5'-D(P*CP*TP*TP*CP*TP*TP*CP*C)-3'), Mitochondrial genome maintenance exonuclease 1
Authors:Yang, C, Gan, J.
Deposit date:2018-05-28
Release date:2018-09-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Structural insights into DNA degradation by human mitochondrial nuclease MGME1
Nucleic Acids Res., 46, 2018
6K5H
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BU of 6k5h by Molmil
Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.
Descriptor: 1-O-phosphono-alpha-D-ribofuranose, URACIL, Uridine phosphorylase
Authors:Yang, C.C, Zhang, X.G.
Deposit date:2019-05-28
Release date:2019-06-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici.
Sci Rep, 10, 2020
8IT9
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BU of 8it9 by Molmil
Co-crystal structure of FTO bound to 22
Descriptor: 2-OXOGLUTARIC ACID, 2-[(2,6-diethyl-4-pyridin-4-yl-phenyl)amino]-6-(1,4-oxazepan-4-ylmethyl)benzoic acid, Alpha-ketoglutarate-dependent dioxygenase FTO
Authors:Yang, C.-G, Gan, J.H.
Deposit date:2023-03-22
Release date:2024-02-14
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Rational Design of RNA Demethylase FTO Inhibitors with Enhanced Antileukemia Drug-Like Properties.
J.Med.Chem., 66, 2023
6KD3
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BU of 6kd3 by Molmil
Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.
Descriptor: Uridine phosphorylase
Authors:Yang, C.C, Zhang, X.G.
Deposit date:2019-06-30
Release date:2019-12-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.764 Å)
Cite:Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.
To be published
1SQD
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BU of 1sqd by Molmil
Structural basis for inhibitor selectivity revealed by crystal structures of plant and mammalian 4-hydroxyphenylpyruvate dioxygenases
Descriptor: 4-hydroxyphenylpyruvate dioxygenase, FE (III) ION
Authors:Yang, C, Pflugrath, J.W, Camper, D.L, Foster, M.L, Pernich, D.J, Walsh, T.A.
Deposit date:2004-03-18
Release date:2004-08-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and Mammalian 4-hydroxyphenylpyruvate dioxygenases
Biochemistry, 43, 2004
7DFU
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BU of 7dfu by Molmil
Crystal structure of Xanthomonas oryzae ClpP S68Y in complex with ADEP4.
Descriptor: ATP-dependent Clp protease proteolytic subunit, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Yang, C.-G, Yang, T.
Deposit date:2020-11-09
Release date:2021-05-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Dysregulation of ClpP by Small-Molecule Activators Used Against Xanthomonas oryzae pv. oryzae Infections.
J.Agric.Food Chem., 69, 2021
1TG5
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BU of 1tg5 by Molmil
Crystal structures of plant 4-hydroxyphenylpyruvate dioxygenases complexed with DAS645
Descriptor: 4-hydroxyphenylpyruvate dioxygenase, FE (II) ION, [1-TERT-BUTYL-3-(2,4-DICHLOROPHENYL)-5-HYDROXY-1H-PYRAZOL-4-YL][2-CHLORO-4-(METHYLSULFONYL)PHENYL]METHANONE
Authors:Yang, C, Pflugrath, J.W, Camper, D.L, Foster, M.L, Pernich, D.J, Walsh, T.A.
Deposit date:2004-05-28
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and Mammalian 4-hydroxyphenylpyruvate dioxygenases
Biochemistry, 43, 2004
5CQG
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BU of 5cqg by Molmil
Structure of Tribolium telomerase in complex with the highly specific inhibitor BIBR1532
Descriptor: 2-{[(2E)-3-(naphthalen-2-yl)but-2-enoyl]amino}benzoic acid, Telomerase reverse transcriptase
Authors:Bryan, C, Rice, C, Hoffman, H, Harkisheimer, M, Sweeney, M, Skordalakes, E.
Deposit date:2015-07-21
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Telomerase Inhibition by the Highly Specific BIBR1532.
Structure, 23, 2015
1TFZ
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BU of 1tfz by Molmil
Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and mammalian 4-hydroxyphenylpyruvate dioxygenases
Descriptor: (1-TERT-BUTYL-5-HYDROXY-1H-PYRAZOL-4-YL)[6-(METHYLSULFONYL)-4'-METHOXY-2-METHYL-1,1'-BIPHENYL-3-YL]METHANONE, 4-hydroxyphenylpyruvate dioxygenase, FE (III) ION
Authors:Yang, C, Pflugrath, J.W, Camper, D.L, Foster, M.L, Pernich, D.J, Walsh, T.A.
Deposit date:2004-05-27
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and Mammalian 4-hydroxyphenylpyruvate dioxygenases
Biochemistry, 43, 2004
5ZYU
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BU of 5zyu by Molmil
The crystal structure of humanMGME1 with single strand DNA2
Descriptor: DNA (5'-D(P*CP*AP*AP*CP*AP*AP*CP*A)-3'), GLYCEROL, Mitochondrial genome maintenance exonuclease 1
Authors:Yang, C, Gan, J.
Deposit date:2018-05-28
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.752 Å)
Cite:Structural insights into DNA degradation by human mitochondrial nuclease MGME1
Nucleic Acids Res., 46, 2018
7DFT
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BU of 7dft by Molmil
Crystal structure of Xanthomonas oryzae ClpP
Descriptor: ATP-dependent Clp protease proteolytic subunit, CHLORIDE ION
Authors:Yang, C.-G, Yang, T.
Deposit date:2020-11-09
Release date:2021-05-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dysregulation of ClpP by Small-Molecule Activators Used Against Xanthomonas oryzae pv. oryzae Infections.
J.Agric.Food Chem., 69, 2021
4JQF
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BU of 4jqf by Molmil
Structure of the C-terminal domain of human telomeric Stn1
Descriptor: CST complex subunit STN1
Authors:Bryan, C.F, Rice, C.T, Harkisheimer, M, Schultz, D, Skordalakes, E.
Deposit date:2013-03-20
Release date:2013-06-05
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the human telomeric stn1-ten1 capping complex.
Plos One, 8, 2013
1SQI
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BU of 1sqi by Molmil
Structural basis for inhibitor selectivity revealed by crystal structures of plant and mammalian 4-hydroxyphenylpyruvate dioxygenases
Descriptor: (1-TERT-BUTYL-5-HYDROXY-1H-PYRAZOL-4-YL)[6-(METHYLSULFONYL)-4'-METHOXY-2-METHYL-1,1'-BIPHENYL-3-YL]METHANONE, 4-hydroxyphenylpyruvic acid dioxygenase, FE (III) ION
Authors:Yang, C, Pflugrath, J.W, Camper, D.L, Foster, M.L, Pernich, D.J, Walsh, T.A.
Deposit date:2004-03-18
Release date:2004-08-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and Mammalian 4-hydroxyphenylpyruvate dioxygenases
Biochemistry, 43, 2004
4JOI
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BU of 4joi by Molmil
Crystal structure of the human telomeric Stn1-Ten1 complex
Descriptor: CST complex subunit STN1, CST complex subunit TEN1
Authors:Bryan, C, Rice, C, Harkisheimer, M, Schultz, D, Skordalakes, E.
Deposit date:2013-03-18
Release date:2013-05-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of the human telomeric stn1-ten1 capping complex.
Plos One, 8, 2013
5ZYV
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BU of 5zyv by Molmil
Crystal structure of human MGME1 with single strand DNA2 and Ca2+
Descriptor: ACETATE ION, CALCIUM ION, DNA (5'-D(P*CP*AP*AP*CP*AP*AP*T)-3'), ...
Authors:Yang, C, Gan, J.
Deposit date:2018-05-28
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structural insights into DNA degradation by human mitochondrial nuclease MGME1
Nucleic Acids Res., 46, 2018
5ZYW
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BU of 5zyw by Molmil
The crystal structure of apo-HsMGME1 with Mn2+
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, MANGANESE (II) ION, ...
Authors:Yang, C, Gan, J.
Deposit date:2018-05-28
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into DNA degradation by human mitochondrial nuclease MGME1
Nucleic Acids Res., 46, 2018

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