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PDB: 121 件

3GQ7
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Crystal Structure of the Bacteriophage Phi29 Gene Product 12 N-terminal Fragment
分子名称: CALCIUM ION, CARBONATE ION, MAGNESIUM ION, ...
著者Xiang, Y, Rossmann, M.G.
登録日2009-03-24
公開日2009-05-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
Mol.Cell, 34, 2009
3GQH
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Crystal Structure of the Bacteriophage phi29 gene product 12 C-terminal fragment
分子名称: Preneck appendage protein
著者Xiang, Y, Rossmann, M.G.
登録日2009-03-24
公開日2009-05-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
Mol.Cell, 34, 2009
3OY7
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Crystal structure of a virus encoded glycosyltransferase in complex with GDP-mannose
分子名称: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, Glycosyltransferase B736L
著者Xiang, Y, Rossmann, M.G.
登録日2010-09-23
公開日2010-11-17
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Crystal structure of a virus-encoded putative glycosyltransferase.
J.Virol., 84, 2010
8IXJ
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Middle segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXK
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bottom segment of the bacteriophage M13 mini variant
分子名称: Attachment protein G3P, Capsid protein G8P, Head virion protein G6P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-09-13
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXL
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top segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-09-13
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8JWT
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Asymmetric middle segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P
著者Xiang, Y, Jia, Q.
登録日2023-06-29
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8JWW
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top segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
著者Xiang, Y, Jia, Q.
登録日2023-06-29
公開日2024-01-03
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant
To Be Published
8JWX
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bottom segment of the bacteriophage M13 mini variant
分子名称: Attachment protein G3P, Capsid protein G8P, Head virion protein G6P
著者Xiang, Y, Jia, Q.
登録日2023-06-29
公開日2024-01-03
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant
To Be Published
3QC7
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The structure of bacteriophage phi29 head fibers has a supercoiled triple repeating helix-turn-helix motif
分子名称: Head fiber protein
著者Xiang, Y, Rossmann, M.G.
登録日2011-01-15
公開日2011-01-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structure of bacteriophage {phi}29 head fibers has a supercoiled triple repeating helix-turn-helix motif.
Proc.Natl.Acad.Sci.USA, 108, 2011
3R02
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The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors
分子名称: 7-[(cis-4-aminocyclohexyl)amino]-5-bromo-1-benzofuran-2-carboxylic acid, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase pim-1
著者Xiang, Y, Hirth, B, Asmussen, G, Biemann, H.-P, Good, A, Fitzgerald, M, Gladysheva, T, Jancsics, K, Liu, J, Metz, M, Papoulis, A, Skerlj, R, Stepp, D.J, Wei, R.R.
登録日2011-03-07
公開日2011-05-11
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
3R04
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The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors
分子名称: 5-{6-[(trans-4-aminocyclohexyl)amino]pyrazin-2-yl}-1-benzofuran-2-carboxylic acid, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase pim-1
著者Xiang, Y, Hirth, B, Asmussen, G, Biemann, H.-P, Good, A, Fitzgerald, M, Gladysheva, T, Jancsics, K, Liu, J, Metz, M, Papoulis, A, Skerlj, R, Stepp, D.J, Wei, R.R.
登録日2011-03-07
公開日2011-05-11
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
7Y42
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Cryo-EM structure of the SARS-CoV-2 spike glycoprotein in complex with all-trans retinoic acid
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, RETINOIC ACID, Spike glycoprotein
著者Xiang, Y, Wang, L.
登録日2022-06-13
公開日2022-07-06
最終更新日2022-09-14
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献A Retinol Derivative Inhibits SARS-CoV-2 Infection by Interrupting Spike-Mediated Cellular Entry.
Mbio, 13, 2022
7WC0
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Crystal structure of Fab region of TAU-2212 neutralizing SARS-CoV-2
分子名称: TAU-2212 Heavy chain, TAU-2212 Light chain
著者Xiang, Y, Li, R, Ma, B.
登録日2021-12-17
公開日2022-08-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.705 Å)
主引用文献Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies.
Commun Biol, 5, 2022
7WCD
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BU of 7wcd by Molmil
Cryo EM structure of SARS-CoV-2 spike in complex with TAU-2212 mAbs in conformation 4
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain, Light chain, ...
著者Xiang, Y, Ma, B, Li, R.
登録日2021-12-19
公開日2022-08-10
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies.
Commun Biol, 5, 2022
7WBZ
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Crystal structure of the SARS-Cov-2 RBD in complex with Fab 2303
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2303 heavy chain, 2303 light chain, ...
著者Xiang, Y, Ma, B.
登録日2021-12-17
公開日2022-08-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies.
Commun Biol, 5, 2022
2ISO
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BU of 2iso by Molmil
Ternary complex of DNA Polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-difluoromethylene triphosphate
分子名称: 2'-DEOXY-5'-O-[({[DIFLUORO(PHOSPHONO)METHYL](HYDROXY)PHOSPHORYL}OXY)(HYDROXY)PHOSPHORYL]GUANOSINE, 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', ...
著者Sucato, C.A, Upton, T.G, Kashemirov, B.A, Martinek, V, Xiang, Y, Beard, W.A.
登録日2006-10-18
公開日2007-01-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Modifying the beta,gamma Leaving-Group Bridging Oxygen Alters Nucleotide Incorporation Efficiency, Fidelity, and the Catalytic Mechanism of DNA Polymerase beta.
Biochemistry, 46, 2007
4W60
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BU of 4w60 by Molmil
The structure of Vaccina virus H7 protein displays A Novel Phosphoinositide binding fold required for membrane biogenesis
分子名称: Late protein H7
著者Kolli, S, Meng, X, Wu, X, Shengjuler, D, Cameron, C.E, Xiang, Y, Deng, J.
登録日2014-08-19
公開日2014-12-31
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure-function analysis of vaccinia virus h7 protein reveals a novel phosphoinositide binding fold essential for poxvirus replication.
J.Virol., 89, 2015
5CYW
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Crystal Structure of Vaccinia Virus C7
分子名称: GLYCEROL, Interferon antagonist C7
著者Krumm, B.E, Meng, X, Li, Y, Xiang, Y, Deng, J.
登録日2015-07-30
公開日2015-11-18
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for antagonizing a host restriction factor by C7 family of poxvirus host-range proteins.
Proc.Natl.Acad.Sci.USA, 112, 2015
5CZ3
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BU of 5cz3 by Molmil
Crystal Structure of Myxoma Virus M64
分子名称: BETA-MERCAPTOETHANOL, M64R
著者Krumm, B.E, Meng, X, Li, Y, Xiang, Y, Deng, J.
登録日2015-07-31
公開日2015-11-18
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for antagonizing a host restriction factor by C7 family of poxvirus host-range proteins.
Proc.Natl.Acad.Sci.USA, 112, 2015
1T0Z
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BU of 1t0z by Molmil
Structure of an Excitatory Insect-specific Toxin with an Analgesic Effect on Mammalian from Scorpion Buthus martensii Karsch
分子名称: SULFATE ION, insect neurotoxin
著者Li, C, Guan, R.-J, Xiang, Y, Zhang, Y, Wang, D.-C.
登録日2004-04-14
公開日2004-12-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of an excitatory insect-specific toxin with an analgesic effect on mammals from the scorpion Buthus martensii Karsch.
Acta Crystallogr.,Sect.D, 61, 2005
1KV0
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Cis/trans Isomerization of Non-prolyl Peptide Bond Observed in Crystal Structure of an Scorpion Toxin
分子名称: Alpha-like toxin BmK-M7
著者Guan, R.J, He, X.L, Wang, M, Xiang, Y, Wang, D.C.
登録日2002-01-23
公開日2003-09-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural mechanism governing cis and trans isomeric states and an intramolecular switch for cis/trans isomerization of a non-proline peptide bond observed in crystal structures of scorpion toxins.
J.Mol.Biol., 341, 2004
1P9Z
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The Solution Structure of Antifungal Peptide Distinct With a Five-disulfide Motif from Eucommia ulmoides Oliver
分子名称: Eucommia Antifungal peptide 2
著者Huang, R.H, Xiang, Y, Tu, G.Z, Zhang, Y, Wang, D.C.
登録日2003-05-13
公開日2004-05-25
最終更新日2019-12-25
実験手法SOLUTION NMR
主引用文献Solution Structure of Eucommia Antifungal Peptide: A Novel Structural Model Distinct with a Five-Disulfide Motif.
Biochemistry, 43, 2004
5KIJ
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Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase and Man9GlcNAc2-PA complex
分子名称: 1,4-BUTANEDIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, ...
著者Karaveg, K, Xiang, Y, Moremen, K.W.
登録日2016-06-16
公開日2017-05-10
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.649 Å)
主引用文献Substrate recognition and catalysis by GH47 alpha-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5KK7
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Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase T688A mutant and Thio-disaccharide substrate analog complex
分子名称: 1,4-BUTANEDIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ACETATE ION, ...
著者Karaveg, K, Xiang, Y, Moremen, K.W.
登録日2016-06-21
公開日2017-05-10
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.7324 Å)
主引用文献Substrate recognition and catalysis by GH47 alpha-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016

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