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PDB: 469 results

6JJD
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Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii nodavirus (MrNV) full VLP
Descriptor: CALCIUM ION, Capsid protein
Authors:Chang, W.H, Wang, C.H, Lin, H.H, Lin, S.Y, Chong, S.C, Wu, Y.Y.
Deposit date:2019-02-25
Release date:2019-05-01
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii nodavirus (MrNV) full VLP
To Be Published
6JJA
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BU of 6jja by Molmil
Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii extra small virus (XSV) VLP
Descriptor: CALCIUM ION, Nucleocapsid protein CP17
Authors:Chang, W.H, Wang, C.H, Lin, H.H, Lin, S.Y, Chong, S.C, Wu, Y.Y.
Deposit date:2019-02-25
Release date:2019-07-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii extra small virus (XSV) VLP
To Be Published
7CJL
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BU of 7cjl by Molmil
Metallo-Beta-Lactamase VIM-2 in complex with (S)-N-(3-(2H-tetrazol-5-yl)phenyl)-3-mercapto-2-methylpropanamide
Descriptor: (S)-N-(3-(2H-tetrazol-5-yl)phenyl)-3-mercapto-2-methylpropanamide, Beta-lactamase class B VIM-2, FORMIC ACID, ...
Authors:Yan, Y.-H, Chen, J, Zhan, Z, Yu, Z.-J, Li, G, Li, G.-B, Guo, L, Wu, Y.
Deposit date:2020-07-11
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.789 Å)
Cite:Discovery of mercaptopropanamide-substituted aryl tetrazoles as new broad-spectrum metallo-beta-lactamase inhibitors.
Rsc Adv, 10, 2020
6MHI
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BU of 6mhi by Molmil
Photoactive Yellow Protein with covalently bound 3,5-dichloro-4-hydroxycinnamic acid chromophore
Descriptor: (2E)-3-(3,5-dichloro-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
Authors:Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
Deposit date:2018-09-18
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
5XA6
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Ion channel modulation by scorpion haemolymph and its defensin ingredients uncovers origin of neurotoxins in telson formed in Paleozoic scorpion
Descriptor: BmKDfsin3
Authors:Tian, C, Wu, Y, Meng, L, Qu, D.
Deposit date:2017-03-11
Release date:2018-03-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Ion channel modulation by scorpion haemolymph and its defensin ingredients uncovers origin of neurotoxins in telson formed in Paleozoic scorpion
To Be Published
5V2G
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De Novo Design of Novel Covalent Constrained Meso-size Peptide Scaffolds with Unique Tertiary Structures
Descriptor: 1,3,5-tris(bromomethyl)benzene, 20-mer Peptide
Authors:Dang, B, Wu, H, Mulligan, V.K, Mravic, M, Wu, Y, Lemmin, T, Ford, A, Silva, D, Baker, D, DeGrado, W.F.
Deposit date:2017-03-03
Release date:2017-09-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4HNM
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BU of 4hnm by Molmil
Crystal structure of human catenin-beta-like 1 56 kDa fragment
Descriptor: Beta-catenin-like protein 1
Authors:Du, Z, Huang, X, Wang, G, Wu, Y.
Deposit date:2012-10-19
Release date:2013-07-31
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (2.9001 Å)
Cite:The structure of full-length human CTNNBL1 reveals a distinct member of the armadillo-repeat protein family.
Acta Crystallogr.,Sect.D, 69, 2013
4HM9
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Crystal structure of full-length human catenin-beta-like 1
Descriptor: Beta-catenin-like protein 1
Authors:Du, Z, Huang, X, Wang, G, Wu, Y.
Deposit date:2012-10-18
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1001 Å)
Cite:The structure of full-length human CTNNBL1 reveals a distinct member of the armadillo-repeat protein family.
Acta Crystallogr.,Sect.D, 69, 2013
5XPW
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BU of 5xpw by Molmil
Structure of amphioxus IgVJ-C2 molecule
Descriptor: amphioxus IgVJ-C2
Authors:Chen, R, Qi, J, Zhang, N, Zhang, L, Yao, S, Wu, Y, Jiang, B, Wang, Z, Yuan, H, Zhang, Q, Xia, C.
Deposit date:2017-06-05
Release date:2018-04-18
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Discovery and Analysis of Invertebrate IgVJ-C2 Structure from Amphioxus Provides Insight into the Evolution of the Ig Superfamily.
J. Immunol., 200, 2018
2JR6
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BU of 2jr6 by Molmil
Solution structure of UPF0434 protein NMA0874. Northeast Structural Genomics Target MR32
Descriptor: UPF0434 protein NMA0874
Authors:Ghosh, A, Singarapu, K.K, Wu, Y, Liu, G, Sukumaran, D, Chen, C.X, Nwosu, C, Owens, L, Xiao, R, Liu, J, Baran, M.C, Swapna, G, Acton, T.B, Rost, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-06-20
Release date:2007-07-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of UPF0434 protein NMA0874.
To be Published
2JS3
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BU of 2js3 by Molmil
NMR Structure of protein Q6N9A4_RHOPA. Northeast Structural Genomics Consortium target RpT8
Descriptor: Uncharacterized protein
Authors:Singarapu, K.K, Wu, Y, Yee, A, Eletsky, A, Sukumaran, D, Garcia, M, Xiao, R, Bansal, S, Baran, M.C, Montelione, G.T, James, P.H, Arrowsmith, C.H, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-06-29
Release date:2007-07-31
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:NMR structure of protein Q6N9A4_RHOPA.
To be Published
2KI8
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BU of 2ki8 by Molmil
Solution NMR structure of tungsten formylmethanofuran dehydrogenase subunit D from Archaeoglobus fulgidus, Northeast Structural Genomics Consortium target AtT7
Descriptor: Tungsten formylmethanofuran dehydrogenase, subunit D (FwdD-2)
Authors:Eletsky, A, Wu, Y, Yee, A, Fares, C, Lee, H.W, Arrowsmith, C.H, Prestegard, J.H, Szyperski, T, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-04-28
Release date:2009-05-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR structure of tungsten formylmethanofuran dehydrogenase subunit D from Archaeoglobus fulgidus
To be Published
2KKV
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BU of 2kkv by Molmil
Solution NMR structure of an integrase domain from protein SPA4288 from Salmonella enterica, Northeast Structural Genomics Consortium Target SlR105H
Descriptor: Integrase
Authors:Mills, J.L, Wu, Y, Sukumaran, D.K, Belote, R.L, Ciccosanti, C, Jiang, M, Nair, R, Rost, B, Acton, T.B, Xiao, R, Swapna, G.V.T, Everett, J.K, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-06-29
Release date:2009-08-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution NMR structure of an integrase domain from protein SPA4288 from Salmonella enterica, Northeast Structural Genomics Consortium Target SlR105H
To be Published
2KZ2
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BU of 2kz2 by Molmil
Calmodulin, C-terminal domain, F92E mutant
Descriptor: CALCIUM ION, Calmodulin
Authors:Korendovych, I, Kulp, D, Wu, Y, Cheng, H, Roder, H, DeGrado, W.
Deposit date:2010-06-10
Release date:2011-04-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Design of a switchable eliminase.
Proc.Natl.Acad.Sci.USA, 108, 2011
2LFF
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BU of 2lff by Molmil
Solution structure of Diiron protein in presence of 8 eq Zn2+, Northeast Structural Genomics consortium target OR21
Descriptor: Diiron protein, ZINC ION
Authors:Pires, M, Wu, Y, Mills, J.L, Reig, A, Englander, W, Degrado, W, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-06-29
Release date:2011-08-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of Diiron protein in presence of 8 eq Zn2+
To be Published
2MLD
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BU of 2mld by Molmil
Solution structure of BmKTX-D19K/K6D
Descriptor: Potassium channel toxin alpha-KTx 3.6
Authors:Hong, J, Lin, D, Chen, Z, Wu, Y.
Deposit date:2014-02-24
Release date:2015-02-25
Method:SOLUTION NMR
Cite:SOLUTION STRUCTURE of BMKTX-D19K
To be Published
2M01
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BU of 2m01 by Molmil
Solution structure of Kunitz-type neurotoxin LmKKT-1a from scorpion venom
Descriptor: Protease inhibitor LmKTT-1a
Authors:Luo, F, Jiang, L, Liu, M, Chen, Z, Wu, Y.
Deposit date:2012-10-15
Release date:2013-11-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Genomic and structural characterization of Kunitz-type peptide LmKTT-1a highlights diversity and evolution of scorpion potassium channel toxins.
Plos One, 8, 2013
2MLA
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BU of 2mla by Molmil
Solution structure of BmKTX-D19K
Descriptor: Potassium channel toxin alpha-KTx 3.6
Authors:Hong, J, Lin, D, Chen, Z, Wu, Y.
Deposit date:2014-02-21
Release date:2015-02-25
Method:SOLUTION NMR
Cite:Solution structure of BmKTX-D19K
To be Published
2MUZ
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BU of 2muz by Molmil
ssNMR structure of a designed rocker protein
Descriptor: designed rocker protein
Authors:Wang, T, Joh, N, Wu, Y, DeGrado, W.F, Hong, M.
Deposit date:2014-09-18
Release date:2014-12-24
Last modified:2015-01-14
Method:SOLUTION NMR
Cite:De novo design of a transmembrane Zn2+-transporting four-helix bundle.
Science, 346, 2014
2NQ1
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BU of 2nq1 by Molmil
Solution Structures of a DNA Dodecamer Duplex
Descriptor: 5'-D(*CP*CP*TP*CP*AP*GP*GP*CP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*GP*CP*CP*TP*GP*AP*GP*G)-3'
Authors:Bhattacharyya, D, Wu, Y, Chaney, S, Campbell, S.
Deposit date:2006-10-30
Release date:2007-06-12
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structures of a DNA Dodecamer Duplex with and without a Cisplatin 1,2-d(GG) Intrastrand Cross-Link: Comparison with the Same DNA Duplex Containing an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link
Biochemistry, 46, 2007
2NQ4
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Solution Structures of a DNA Dodecamer Duplex
Descriptor: 5'-D(*CP*CP*TP*CP*AP*GP*GP*CP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*GP*CP*CP*TP*GP*AP*GP*G)-3'
Authors:Bhattacharyya, D, Wu, Y, Chaney, S, Campbell, S.
Deposit date:2006-10-30
Release date:2007-06-12
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structures of a DNA Dodecamer Duplex with and without a Cisplatin 1,2-d(GG) Intrastrand Cross-Link: Comparison with the Same DNA Duplex Containing an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link
Biochemistry, 46, 2007
4QFY
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Crystal structure of the tetrameric dGTP/dCTP-bound SAMHD1 (RN206) mutant catalytic core
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J.
Deposit date:2014-05-22
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates.
J.Biol.Chem., 289, 2014
4QFZ
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Crystal structure of the tetrameric dGTP/dTTP-bound SAMHD1 (RN206) mutant catalytic core
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, MAGNESIUM ION, ...
Authors:Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J.
Deposit date:2014-05-22
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates.
J.Biol.Chem., 289, 2014
4QFX
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Crystal structure of the tetrameric dGTP/dATP-bound SAMHD1 (RN206) mutant catalytic core
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J.
Deposit date:2014-05-21
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates.
J.Biol.Chem., 289, 2014
4QG0
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Crystal structure of the tetrameric dGTP/dUTP-bound SAMHD1 (RN206) mutant catalytic core
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DEOXYURIDINE-5'-TRIPHOSPHATE, ...
Authors:Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J.
Deposit date:2014-05-22
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates.
J.Biol.Chem., 289, 2014

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