Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 622 results

7CV1
DownloadVisualize
BU of 7cv1 by Molmil
Structure of human tRNAHis guanylyltransferase (Thg1) in the presence of human mitochondrial tRNAHis
Descriptor: Probable tRNA(His) guanylyltransferase
Authors:Nakamura, A, Wang, D, Komatsu, Y.
Deposit date:2020-08-25
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (4 Å)
Cite:Analysis of GTP addition in the reverse (3'-5') direction by human tRNA His guanylyltransferase.
Rna, 27, 2021
3LYX
DownloadVisualize
BU of 3lyx by Molmil
Crystal structure of the PAS domain of the protein CPS_1291 from Colwellia psychrerythraea. Northeast Structural Genomics Consortium target id CsR222B
Descriptor: Sensory box/GGDEF domain protein
Authors:Seetharaman, J, Chen, Y, Wang, D, Janjua, H, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-02-28
Release date:2010-04-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the PAS domain of the protein CPS_1291 from Colwellia psychrerythraea. Northeast Structural Genomics Consortium target id CsR222B
To be Published
3GA2
DownloadVisualize
BU of 3ga2 by Molmil
Crystal structure of the Endonuclease_V (BSU36170) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR624
Descriptor: Endonuclease V
Authors:Forouhar, F, Abashidze, M, Hussain, M, Seetharaman, J, Janjua, H, Fang, Y, Xiao, R, Cunningham, K, Ma, L.-C, Owens, L, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-02-16
Release date:2009-02-24
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the Endonuclease_V (BSU36170) from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR624
To be Published
3GAS
DownloadVisualize
BU of 3gas by Molmil
Crystal Structure of Helicobacter pylori Heme Oxygenase Hugz in Complex with Heme
Descriptor: 1,2-ETHANEDIOL, AZIDE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Jiang, F, Hu, Y.L, Guo, Y, Guo, G, Zou, Q.M, Wang, D.C.
Deposit date:2009-02-18
Release date:2010-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Helicobacter pylori Heme Oxygenase Hugz in Complex with Heme
To be Published
3MTK
DownloadVisualize
BU of 3mtk by Molmil
X-Ray Structure of Diguanylate cyclase/phosphodiesterase from Caldicellulosiruptor saccharolyticus, Northeast Structural Genomics Consortium Target ClR27C
Descriptor: Diguanylate cyclase/phosphodiesterase
Authors:Kuzin, A, Abashidze, M, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-04-30
Release date:2010-06-02
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Northeast Structural Genomics Consortium Target ClR27C
To be Published
1ZYW
DownloadVisualize
BU of 1zyw by Molmil
Crystal Structure Of Mutant K8DP9SR58KP60G Of Scorpion alpha-Like Neurotoxin Bmk M1 From Buthus Martensii Karsch
Descriptor: ACETATE ION, Alpha-like neurotoxin BmK-I, SULFATE ION
Authors:Ye, X, Bosmans, F, Li, C, Zhang, Y, Wang, D.C, Tytgat, J.
Deposit date:2005-06-13
Release date:2006-05-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
J.Mol.Biol., 353, 2005
2G3T
DownloadVisualize
BU of 2g3t by Molmil
Crystal structure of human spermidine/spermine N1-acetyltransferase (hSSAT)
Descriptor: Diamine acetyltransferase 1
Authors:Zhu, Y.Q, Yang, N, Wang, D.C.
Deposit date:2006-02-21
Release date:2006-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human spermidine/spermine N1-acetyltransferase (hSSAT): the first structure of a new sequence family of transferase homologous superfamily
Proteins, 63, 2006
4CAS
DownloadVisualize
BU of 4cas by Molmil
Serial femtosecond crystallography structure of a photosynthetic reaction center
Descriptor: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL A, ...
Authors:Johansson, L.C, Arnlund, D, Katona, G, White, T.A, Barty, A, DePonte, D.P, Shoeman, R.L, Wickstrand, C, Sharma, A, Williams, G.J, Aquila, A, Bogan, M.J, Caleman, C, Davidsson, J, Doak, R.B, Frank, M, Fromme, R, Galli, L, Grotjohann, I, Hunter, M.S, Kassemeyer, S, Kirian, R.A, Kupitz, C, Liang, M, Lomb, L, Malmerberg, E, Martin, A.V, Messerschmidt, M, Nass, K, Redecke, L, Seibert, M.M, Sjohamn, J, Steinbrener, J, Stellato, F, Wang, D, Wahlgren, W.Y, Weierstall, U, Westenhoff, S, Zatsepin, N.A, Boutet, S, Spence, J.C.H, Schlichting, I, Chapman, H.N, Fromme, P, Neutze, R.
Deposit date:2013-10-09
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography.
Nat Commun, 4, 2013
5FB5
DownloadVisualize
BU of 5fb5 by Molmil
Crystal structure of the bacteriophage phi29 tail knob protein gp9
Descriptor: Distal tube protein
Authors:Xu, J.W, Gui, M, Wang, D.H, Xiang, Y.
Deposit date:2015-12-14
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The bacteriophage 29 tail possesses a pore-forming loop for cell membrane penetration.
Nature, 534, 2016
5T0U
DownloadVisualize
BU of 5t0u by Molmil
CTCF ZnF2-7 and DNA complex structure
Descriptor: DNA (5'-D(*CP*CP*TP*CP*AP*CP*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*AP*GP*TP*GP*AP*GP*G)-3'), Transcriptional repressor CTCF, ...
Authors:Hashimoto, H, Wang, D, Cheng, X.
Deposit date:2016-08-16
Release date:2017-05-24
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.199 Å)
Cite:Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA.
Mol. Cell, 66, 2017
7EPB
DownloadVisualize
BU of 7epb by Molmil
Cryo-EM structure of LY354740-bound mGlu2 homodimer
Descriptor: (1S,2S,5R,6S)-2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylic acid, Anti-RON nanobody, Metabotropic glutamate receptor 2
Authors:Du, J, Wang, D, Fan, H, Tai, L, Lin, S, Han, S, Sun, F, Wu, B, Zhao, Q.
Deposit date:2021-04-26
Release date:2021-06-23
Last modified:2021-07-07
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of human mGlu2 and mGlu7 homo- and heterodimers.
Nature, 594, 2021
7EW5
DownloadVisualize
BU of 7ew5 by Molmil
immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5
Descriptor: Heavy chain of 13H5, Light chain of 13H5, Major capsid protein L1
Authors:Wang, Z.P, Wang, D.N, Gu, Y, Li, S.W.
Deposit date:2021-05-24
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.606 Å)
Cite:structure of HPV6 L1 pentamer in complex with neutralizing antibody 13H5
To Be Published
3LM1
DownloadVisualize
BU of 3lm1 by Molmil
Crystal Structure Analysis of Maclura pomifera agglutinin complex with p-nitrophenyl-GalNAc
Descriptor: 4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, Agglutinin alpha chain, Agglutinin beta-2 chain
Authors:Huang, J, Xu, Z, Wang, D, Ogato, C, Hirama, T, Palczewski, K, Hazen, S.L, Lee, X, Young, N.M.
Deposit date:2010-01-29
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
Glycobiology, 20, 2010
3L8N
DownloadVisualize
BU of 3l8n by Molmil
Crystal Structure of a domain of Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (BrefeldinA-inhibited GEP 2) from Homo sapiens (Human). Northeast Structural Genomics Consortium target id HR5562A
Descriptor: Brefeldin A-inhibited guanine nucleotide-exchange protein 2
Authors:Seetharaman, J, Su, M, Forouhar, F, Wang, D, Janjua, H, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-12-31
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Crystal Structure of a domain of Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (BrefeldinA-inhibited GEP 2) from Homo sapiens (Human). Northeast Structural Genomics Consortium target id HR5562A
To be Published
5HSO
DownloadVisualize
BU of 5hso by Molmil
Crystal structure of MYCOBACTERIUM TUBERCULOSIS MARR FAMILY PROTEIN Rv2887 complex with DNA
Descriptor: DNA (30-MER), the upstream sequence of Rv0560c, Uncharacterized HTH-type transcriptional regulator Rv2887
Authors:Gao, Y.R, Li, D.F, Wang, D.C, Bi, L.J.
Deposit date:2016-01-26
Release date:2017-02-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Sci Rep, 7, 2017
4G3H
DownloadVisualize
BU of 4g3h by Molmil
Crystal structure of helicobacter pylori arginase
Descriptor: Arginase (RocF), MANGANESE (II) ION
Authors:Zhang, J, Zhang, X, Li, D, Hu, Y, Zou, Q, Wang, D.
Deposit date:2012-07-13
Release date:2012-08-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function studies on Helicobacter pylori arginase
To be Published
4HWY
DownloadVisualize
BU of 4hwy by Molmil
Trypanosoma brucei procathepsin B solved from 40 fs free-electron laser pulse data by serial femtosecond X-ray crystallography
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Cysteine peptidase C (CPC), beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Redecke, L, Nass, K, DePonte, D.P, White, T.A, Rehders, D, Barty, A, Stellato, F, Liang, M, Barends, T.R.M, Boutet, S, Williams, G.W, Messerschmidt, M, Seibert, M.M, Aquila, A, Arnlund, D, Bajt, S, Barth, T, Bogan, M.J, Caleman, C, Chao, T.-C, Doak, R.B, Fleckenstein, H, Frank, M, Fromme, R, Galli, L, Grotjohann, I, Hunter, M.S, Johansson, L.C, Kassemeyer, S, Katona, G, Kirian, R.A, Koopmann, R, Kupitz, C, Lomb, L, Martin, A.V, Mogk, S, Neutze, R, Shoemann, R.L, Steinbrener, J, Timneanu, N, Wang, D, Weierstall, U, Zatsepin, N.A, Spence, J.C.H, Fromme, P, Schlichting, I, Duszenko, M, Betzel, C, Chapman, H.
Deposit date:2012-11-09
Release date:2012-12-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Natively inhibited Trypanosoma brucei cathepsin B structure determined by using an X-ray laser.
Science, 339, 2013
3CXC
DownloadVisualize
BU of 3cxc by Molmil
The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui
Descriptor: (3Z)-N-[(4E)-5-(4-{(5S)-5-[(acetylamino)methyl]-2-oxo-1,3-oxazolidin-3-yl}-2-fluorophenyl)pent-4-en-1-yl]-3-(4-methyl-2,6-dioxo-1,6-dihydropyrimidin-5(2H)-ylidene)propanamide, 23S RIBOSOMAL RNA, 5'-R(*CP*CP*A)-3', ...
Authors:Ippolito, J.A, Wang, D, Kanyo, Z.F, Duffy, E.M.
Deposit date:2008-04-24
Release date:2009-04-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Design at the atomic level: design of biaryloxazolidinones as potent orally active antibiotics.
Bioorg.Med.Chem.Lett., 18, 2008
3USH
DownloadVisualize
BU of 3ush by Molmil
Crystal Structure of the Q2S0R5 protein from Salinibacter ruber, Northeast Structural Genomics Consortium Target SrR207
Descriptor: BROMIDE ION, Uncharacterized protein
Authors:Vorobiev, S, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-11-23
Release date:2011-12-14
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.692 Å)
Cite:Crystal Structure of the Q2S0R5 protein from Salinibacter ruber, Northeast Structural Genomics Consortium Target SrR207
To be Published
3DL3
DownloadVisualize
BU of 3dl3 by Molmil
Crystal structure of the tellurite resistance protein TehB. Northeast Structural Genomics Consortium target VfR98 .
Descriptor: Tellurite resistance protein B
Authors:Kuzin, A.P, Su, M, Seetharaman, J, Wang, D, Mao, L, Maglaqui, M, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-26
Release date:2008-08-26
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the tellurite resistance protein TehB. Northeast Structural Genomics Consortium target VfR98.
To be Published
5T00
DownloadVisualize
BU of 5t00 by Molmil
Human CTCF ZnF3-7 and methylated DNA complex
Descriptor: DNA (5'-GCCAGCAGGGGG(5CM)GCTA-3'), DNA (5'-TAG(5CM)GCCCCCTGCTGGC-3'), Transcriptional repressor CTCF, ...
Authors:Hashimoto, H, Wang, D, Cheng, X.
Deposit date:2016-08-15
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA.
Mol. Cell, 66, 2017
5YPM
DownloadVisualize
BU of 5ypm by Molmil
Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI1 complex
Descriptor: (2S,3R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfan yl-3-methyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid, Metallo-beta-lactamase NDM-1, SULFATE ION, ...
Authors:Feng, H, Wang, D, Liu, W.
Deposit date:2017-11-02
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis.
Nat Commun, 8, 2017
4DIU
DownloadVisualize
BU of 4diu by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR94
Descriptor: Engineered Protein PF00326
Authors:Seetharaman, J, Lew, S, Wang, D, Kohan, E, Patel, D, Whitehead, T, Fleishman, S, Ciccosanti, C, Xiao, R, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-01-31
Release date:2012-04-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR94
To be Published
7F8I
DownloadVisualize
BU of 7f8i by Molmil
Crystal structure of HPV6 L1 pentamer
Descriptor: Major capsid protein L1
Authors:Wang, Z.P, Wang, D.N, Gu, Y, Li, S.W.
Deposit date:2021-07-02
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.366 Å)
Cite:Crystal structure of HPV6 L1 pentamer
To Be Published
5HDK
DownloadVisualize
BU of 5hdk by Molmil
Crystal structure of heat shock factor 2-DBD
Descriptor: CHLORIDE ION, Heat shock factor protein 2, POTASSIUM ION, ...
Authors:Feng, H, Liu, W, Wang, D.C.
Deposit date:2016-01-05
Release date:2017-01-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:HSF1-DBD crystal structure
To Be Published

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon