Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 481 results

6WL8
DownloadVisualize
BU of 6wl8 by Molmil
Cryo-EM of Form 2 peptide filament
Descriptor: Form 2 peptide
Authors:Wang, F, Gnewou, O.M, Xu, C, Su, Z, Egelman, E.H, Conticello, V.P.
Deposit date:2020-04-18
Release date:2020-12-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials.
Nat Commun, 12, 2021
2QEG
DownloadVisualize
BU of 2qeg by Molmil
B-DNA with 7-deaza-dG modification
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*(7GU)P*DCP*DG)-3')
Authors:Wang, F, Li, F, Ganguly, M, Marky, L.A, Gold, B, Egli, M, Stone, M.P.
Deposit date:2007-06-25
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
Biochemistry, 47, 2008
2QEF
DownloadVisualize
BU of 2qef by Molmil
X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCG
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU)P*DCP*(7GU)P*DCP*DG)-3')
Authors:Wang, F, Li, F, Ganguly, M, Marky, L.A, Gold, B, Egli, M, Stone, M.P.
Deposit date:2007-06-25
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
Biochemistry, 47, 2008
5JHH
DownloadVisualize
BU of 5jhh by Molmil
Crystal structure of the ternary complex between the human RhoA, its inhibitor and the DH/PH domain of human ARHGEF11
Descriptor: 3-{3-[ethyl(quinolin-2-yl)amino]phenyl}propanoic acid, GLYCEROL, Rho guanine nucleotide exchange factor 11, ...
Authors:Lv, Z, Wang, R, Ma, L, Miao, Q, Wu, J, Yan, Z, Li, J, Miao, L, Wang, F.
Deposit date:2016-04-21
Release date:2017-04-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA bound with its inhibitor and PDZRhoGEF
To Be Published
7SN4
DownloadVisualize
BU of 7sn4 by Molmil
Cryo-EM structure of the enterohemorrhagic E. coli O157:H7 flagellar filament
Descriptor: Flagellin
Authors:Kreutzberger, M.A.B, Wang, F, Egelman, E.H.
Deposit date:2021-10-27
Release date:2022-03-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
5X7U
DownloadVisualize
BU of 5x7u by Molmil
Trehalose synthase from Thermobaculum terrenum
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Trehalose synthase
Authors:Su, J, Wang, F.
Deposit date:2017-02-27
Release date:2018-02-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Structural Characteristics and Function of a New Kind of Thermostable Trehalose Synthase from Thermobaculum terrenum.
J. Agric. Food Chem., 65, 2017
7SQD
DownloadVisualize
BU of 7sqd by Molmil
Cryo-EM structure of the Achromobacter flagellar filament
Descriptor: Flagellin
Authors:Kreutzberger, M.A, Wang, F, Egelman, E.H.
Deposit date:2021-11-05
Release date:2022-03-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
7SLZ
DownloadVisualize
BU of 7slz by Molmil
CRYSTAL STRUCTURE OF GID4 IN COMPLEX WITH BPF023596
Descriptor: Glucose-induced degradation protein 4 homolog, N-[(1s,4s)-4-(1H-benzimidazol-2-yl)cyclohexyl]-N~2~-[(1H-indol-2-yl)methyl]glycinamide
Authors:Song, X, Dong, A, Calabrese, M, Wang, F, Owen, D, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2021-10-25
Release date:2022-01-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:CRYSTAL STRUCTURE OF GID4 IN COMPLEX WITH BPF023596
To Be Published
5XHX
DownloadVisualize
BU of 5xhx by Molmil
Crystal structure of VqsR LBD domain from Pseudomonas aeruginosa
Descriptor: Helix-turn-helix transcriptional regulator
Authors:Gu, L, He, Q, Wang, K, Wang, F.
Deposit date:2017-04-24
Release date:2017-05-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of VqsR LBD domain from Pseudomonas aeruginosa
To Be Published
4M60
DownloadVisualize
BU of 4m60 by Molmil
Crystal structure of macrolide glycosyltransferases OleD
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Oleandomycin glycosyltransferase, SODIUM ION
Authors:Olmos Jr, J.L, Martinez III, E, Wang, F, Helmich, K.E, Singh, S, Xu, W, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2013-08-08
Release date:2013-09-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of macrolide glycosyltransferases OleD
To be Published
9BJN
DownloadVisualize
BU of 9bjn by Molmil
Cryo-EM of Azo-ffspy fiber
Descriptor: D-peptide ffspy
Authors:Zia, A, Guo, J, Xu, B, Wang, F.
Deposit date:2024-04-25
Release date:2024-09-18
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cell-Free Nonequilibrium Assembly for Hierarchical Protein/Peptide Nanopillars.
J.Am.Chem.Soc., 146, 2024
9BJO
DownloadVisualize
BU of 9bjo by Molmil
Cryo-EM of Azo-ffsy fiber
Descriptor: D-peptide ffsy
Authors:Zia, A, Guo, J, Xu, B, Wang, F.
Deposit date:2024-04-25
Release date:2024-09-18
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cell-Free Nonequilibrium Assembly for Hierarchical Protein/Peptide Nanopillars.
J.Am.Chem.Soc., 146, 2024
9JJI
DownloadVisualize
BU of 9jji by Molmil
Local refinement of RHDV GI.2 T=1 VLP
Descriptor: Capsid protein
Authors:Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
Deposit date:2024-09-13
Release date:2024-10-16
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP.
J.Virol., 2024
9JJJ
DownloadVisualize
BU of 9jjj by Molmil
Cryo-EM structure of a T=3 VLP of RHDV GI.2
Descriptor: Capsid protein
Authors:Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
Deposit date:2024-09-13
Release date:2024-10-16
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP.
J.Virol., 2024
9JJG
DownloadVisualize
BU of 9jjg by Molmil
Cryo-EM structure of RHDV GI.2 virion
Descriptor: Genome polyprotein
Authors:Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
Deposit date:2024-09-13
Release date:2024-10-16
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.46 Å)
Cite:Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP.
J.Virol., 2024
5X4H
DownloadVisualize
BU of 5x4h by Molmil
The crystal structure of Pyrococcus furiosus RecJ (wild-type)
Descriptor: MAGNESIUM ION, Uncharacterized protein
Authors:Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
Deposit date:2017-02-13
Release date:2018-02-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
9JJH
DownloadVisualize
BU of 9jjh by Molmil
Cryo-EM structure of a T=1 VLP of RHDV GI.2 with N-terminal 1-37 residues truncated
Descriptor: Capsid protein
Authors:Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
Deposit date:2024-09-13
Release date:2024-10-16
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP.
J.Virol., 2024
5X4I
DownloadVisualize
BU of 5x4i by Molmil
Pyrococcus furiosus RecJ (D83A, Mn-soaking)
Descriptor: CHLORIDE ION, MANGANESE (II) ION, Uncharacterized protein
Authors:Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P.
Deposit date:2017-02-13
Release date:2018-02-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.092 Å)
Cite:The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45.
Nucleic Acids Res., 45, 2017
5JHG
DownloadVisualize
BU of 5jhg by Molmil
Crystal structure of the complex between the human RhoA and the DH/PH domain of human ARHGEF11
Descriptor: GLYCEROL, Rho guanine nucleotide exchange factor 11, Transforming protein RhoA
Authors:Wang, R, Chen, Q, Zhang, H, Yan, Z, Li, J, Miao, L, Wang, F.
Deposit date:2016-04-21
Release date:2017-04-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA bound with its inhibitor and ARHGEF11
To Be Published
5X73
DownloadVisualize
BU of 5x73 by Molmil
The crystal Structure PDE delta in complex with R-p9
Descriptor: (2R)-2-(2-fluorophenyl)-3-phenyl-1,2-dihydroquinazolin-4-one, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Authors:Jiang, Y, Zhuang, C, Chen, L, Wang, R, Wang, F, Sheng, C.
Deposit date:2017-02-23
Release date:2017-10-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Biology-Inspired Discovery of Novel KRAS-PDE delta Inhibitors
J. Med. Chem., 60, 2017
5X74
DownloadVisualize
BU of 5x74 by Molmil
The crystal Structure PDE delta in complex with compound (R, R)-1g
Descriptor: (2R)-2-(2-fluorophenyl)-3-[2-[4-[(2R)-2-(2-fluorophenyl)-4-oxidanylidene-1,2-dihydroquinazolin-3-yl]piperidin-1-yl]ethyl]-1,2-dihydroquinazolin-4-one, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Authors:Jiang, Y, Zhuang, C, Chen, L, Wang, R, Wang, F, Sheng, C.
Deposit date:2017-02-23
Release date:2017-10-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Biology-Inspired Discovery of Novel KRAS-PDE delta Inhibitors
J. Med. Chem., 60, 2017
3AQQ
DownloadVisualize
BU of 3aqq by Molmil
Crystal structure of human CRHSP-24
Descriptor: Calcium-regulated heat stable protein 1
Authors:Hou, H, Wang, F, Zhang, W, Wang, D, Li, X, Bartlam, M, Yao, X, Rao, Z.
Deposit date:2010-11-17
Release date:2010-12-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:CRHSP-24 is a novel cargo adaptor trafficking between stress granules and processing bodies
To be Published
3DBQ
DownloadVisualize
BU of 3dbq by Molmil
Crystal structure of TTK kinase domain
Descriptor: Dual specificity protein kinase TTK
Authors:Wang, W, Yang, Y.T, Gao, Y.F, Zhu, S.C, Wang, F, Old, W, Xu, Q.B, Resing, K, Ahn, N, Lei, M, Liu, X.D.
Deposit date:2008-06-02
Release date:2009-02-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Mechanistic Insights into Mps1 Kinase Activation
J.CELL.MOL.MED., 13, 2008
3JCO
DownloadVisualize
BU of 3jco by Molmil
Structure of yeast 26S proteasome in M1 state derived from Titan dataset
Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ...
Authors:Luan, B, Huang, X.L, Wu, J.P, Shi, Y.G, Wang, F.
Deposit date:2016-01-06
Release date:2016-06-15
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structure of an endogenous yeast 26S proteasome reveals two major conformational states.
Proc.Natl.Acad.Sci.USA, 113, 2016
4QY0
DownloadVisualize
BU of 4qy0 by Molmil
Structure of H10 from human-infecting H10N8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, hemagglutinin
Authors:Wang, M, Zhang, W, Qi, J, Wang, F, Zhou, J, Bi, Y, Wu, Y, Sun, H, Liu, J, Huang, C, Li, X, Yan, J, Shu, Y, Shi, Y, Gao, G.F.
Deposit date:2014-07-23
Release date:2015-01-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus
Nat Commun, 6, 2015

227111

數據於2024-11-06公開中

PDB statisticsPDBj update infoContact PDBjnumon