Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12988 results

2YJC
DownloadVisualize
BU of 2yjc by Molmil
CATHEPSIN L WITH A NITRILE INHIBITOR
Descriptor: (2S,4R)-1-[1-(4-chlorophenyl)cyclopropyl]carbonyl-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]pyrrolidine-2-carboxamide, CATHEPSIN L1
Authors:Banner, D.W, Benz, J.M, Haap, W.
Deposit date:2011-05-19
Release date:2011-11-23
Last modified:2011-11-30
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Halogen Bonding at the Active Sites of Human Cathepsin L and Mek1 Kinase: Efficient Interactions in Different Environments.
Chemmedchem, 6, 2011
2Y6F
DownloadVisualize
BU of 2y6f by Molmil
Isopenicillin N synthase with AC-D-S-methyl-3R-methylcysteine
Descriptor: (2S)-2-AMINO-6-[[(2R)-1-[[(2S)-1-HYDROXY-3-METHYLSULFANYL-1-OXO-BUTAN-2-YL]AMINO]-1-OXO-3-SULFANYL-PROPAN-2-YL]AMINO]-6-OXO-HEXANOIC ACID, FE (III) ION, ISOPENICILLIN N SYNTHASE, ...
Authors:Rutledge, P.J, Clifton, I.J, Ge, W.
Deposit date:2011-01-21
Release date:2011-08-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Isopenicillin N Synthase Binds Delta-(L-Alpha-Aminoadipoyl)-L-Cysteinyl-D-Thia-Allo-Isoleucine Through Both Sulfur Atoms.
Chembiochem, 12, 2011
4XIG
DownloadVisualize
BU of 4xig by Molmil
Crystal structure of bacterial alginate ABC transporter determined through humid air and glue-coating method
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgM1, AlgM2, ...
Authors:Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2015-01-07
Release date:2016-01-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.402 Å)
Cite:A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
1IDW
DownloadVisualize
BU of 1idw by Molmil
STRUCTURE OF THE HYBRID RNA/DNA R-GCUUCGGC-D[CL]U IN PRESENCE OF RH(NH3)6+++
Descriptor: 5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(UCL))-3', CHLORIDE ION, RHODIUM HEXAMINE ION
Authors:Cruse, W, Saludjian, P, Neuman, A, Prange, T.
Deposit date:2001-04-05
Release date:2001-04-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Destabilizing effect of a fluorouracil extra base in a hybrid RNA duplex compared with bromo and chloro analogues
Acta Crystallogr.,Sect.D, 57, 2001
4XK2
DownloadVisualize
BU of 4xk2 by Molmil
Crystal structure of aldo-keto reductase from Polaromonas sp. JS666
Descriptor: Aldo/keto reductase, CHLORIDE ION, SODIUM ION
Authors:Gasiorowska, O.A, Handing, K.B, Shabalin, I.G, Sroka, P, Hillerich, B.S, Bonanno, J, Seidel, R, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2015-01-09
Release date:2015-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of aldo-keto reductase from Polaromonas sp. JS666
to be published
8GY6
DownloadVisualize
BU of 8gy6 by Molmil
Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding
Descriptor: Gossypol, Non-structural protein 7, Non-structural protein 8, ...
Authors:Wang, W, Ren, M, Li, F.
Deposit date:2022-09-21
Release date:2023-11-01
Method:ELECTRON MICROSCOPY
Cite:Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding
To Be Published
4XLG
DownloadVisualize
BU of 4xlg by Molmil
C. glabrata Slx1 in complex with Slx4CCD.
Descriptor: CHLORIDE ION, Structure-specific endonuclease subunit SLX1, Structure-specific endonuclease subunit SLX4, ...
Authors:Gaur, V, Wyatt, H.D.M, Komorowska, W, Szczepanowski, R.H, de Sanctis, D, Gorecka, K.M, West, S.C, Nowotny, M.
Deposit date:2015-01-13
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural and Mechanistic Analysis of the Slx1-Slx4 Endonuclease.
Cell Rep, 10, 2015
1P6J
DownloadVisualize
BU of 1p6j by Molmil
Rat neuronal NOS heme domain with L-N(omega)-nitroarginine-(4R)-amino-L-proline amide bound
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, L-N(OMEGA)-NITROARGININE-(4R)-AMINO-L-PROLINE AMIDE, ...
Authors:Flinspach, M.L, Li, H, Jamal, J, Yang, W, Huang, H, Hah, J.-M, Gomez-Vidal, J.A, Litzinger, E.A, Silverman, R.B, Poulos, T.L.
Deposit date:2003-04-29
Release date:2004-01-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for dipeptide amide isoform-selective inhibition of neuronal nitric oxide synthase.
Nat.Struct.Mol.Biol., 11, 2004
8BW1
DownloadVisualize
BU of 8bw1 by Molmil
Yeast 20S proteasome in complex with an engineered fellutamide derivative (C14QAL)
Descriptor: 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Bozhueyuek, K.A.J, Praeve, L, Kegler, C, Kaiser, S, Shi, Y, Kuttenlochner, W, Schenk, L, Groll, M, Hochberg, G.K.A, Bode, H.B.
Deposit date:2022-12-06
Release date:2023-12-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Evolution-inspired engineering of nonribosomal peptide synthetases.
Science, 383, 2024
6U9I
DownloadVisualize
BU of 6u9i by Molmil
Crystal structure of BvnE pinacolase from Penicillium brevicompactum
Descriptor: BvnE, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Ye, Y, Du, L, Zhang, X, Newmister, S.A, McCauley, M, Alegre-Requena, J.V, Zhang, W, Mu, S, Minami, A, Fraley, A.E, Adrover-Castellano, M.L, Carney, N, Shende, V.V, Oikawa, H, Kato, H, Tsukamoto, S, Paton, R.S, Williams, R.M, Sherman, D.H, Li, S.
Deposit date:2019-09-09
Release date:2020-09-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.777 Å)
Cite:Fungal-derived brevianamide assembly by a stereoselective semipinacolase.
Nat Catal, 3, 2020
1P58
DownloadVisualize
BU of 1p58 by Molmil
Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction
Descriptor: Envelope protein M, Major envelope protein E
Authors:Zhang, W, Chipman, P.R, Corver, J, Johnson, P.R, Zhang, Y, Mukhopadhyay, S, Baker, T.S, Strauss, J.H, Rossmann, M.G, Kuhn, R.J.
Deposit date:2003-04-25
Release date:2003-11-04
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Visualization of membrane protein domains by cryo-electron microscopy of dengue virus
Nat.Struct.Biol., 10, 2003
6UKT
DownloadVisualize
BU of 6ukt by Molmil
Cryo-EM structure of mammalian Ric-8A:Galpha(i):nanobody complex
Descriptor: Guanine nucleotide-binding protein G(i) subunit alpha-1, NB8109, NB8117, ...
Authors:Mou, T.C, Zhang, K, Johnston, J.D, Chiu, W, Sprang, S.R.
Deposit date:2019-10-05
Release date:2020-03-11
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to G alpha i1.
Nat Commun, 11, 2020
6UBL
DownloadVisualize
BU of 6ubl by Molmil
Structure of DynF from the Dynemicin Biosynthesis Pathway of Micromonospora chersina
Descriptor: DynF, PALMITIC ACID
Authors:Kosgei, A.J, Miller, M.D, Xu, W, Bhardwaj, M, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2019-09-12
Release date:2020-09-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F, 78, 2022
4Y05
DownloadVisualize
BU of 4y05 by Molmil
KIF2C short Loop2 construct
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF2C, MAGNESIUM ION, ...
Authors:Wang, W, Knossow, M, Gigant, B.
Deposit date:2015-02-05
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:New Insights into the Coupling between Microtubule Depolymerization and ATP Hydrolysis by Kinesin-13 Protein Kif2C.
J.Biol.Chem., 290, 2015
1P6M
DownloadVisualize
BU of 1p6m by Molmil
Bovine endothelial NOS heme domain with (4S)-N-(4-amino-5-[aminoethyl]aminopentyl)-N'-nitroguanidine bound
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, CACODYLATE ION, ...
Authors:Flinspach, M.L, Li, H, Jamal, J, Yang, W, Huang, H, Hah, J.-M, Gomez-Vidal, J.A, Litzinger, E.A, Silverman, R.B, Poulos, T.L.
Deposit date:2003-04-29
Release date:2004-01-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural basis for dipeptide amide isoform-selective inhibition of neuronal nitric oxide synthase.
Nat.Struct.Mol.Biol., 11, 2004
2YXR
DownloadVisualize
BU of 2yxr by Molmil
The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
Descriptor: Preprotein translocase secG subunit, Preprotein translocase subunit secE, Preprotein translocase subunit secY
Authors:Li, W, Schulman, S.
Deposit date:2007-04-27
Release date:2007-08-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The plug domain of the SecY protein stabilizes the closed state of the translocation channel and maintains a membrane seal
Mol.Cell, 26, 2007
4XAP
DownloadVisualize
BU of 4xap by Molmil
Crystal structure of aldo-keto reductase from Sinorhizobium meliloti 1021
Descriptor: Aldo-keto reductase
Authors:Gasiorowska, O.A, Handing, K.B, Shabalin, I.G, Bonanno, J, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-12-15
Release date:2014-12-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structure of aldo-keto reductase from Sinorhizobium meliloti 1021
to be published
6UGH
DownloadVisualize
BU of 6ugh by Molmil
Cryo-EM structure of the apo form of human PRMT5:MEP50 complex at a resolution of 3.4 angstrom
Descriptor: Methylosome protein 50, Protein arginine N-methyltransferase 5
Authors:Zhou, W, Yadav, G.P, Jiang, Q.-X, Li, C.
Deposit date:2019-09-26
Release date:2020-12-09
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A 3.4-angstrom cryo-EM structure of the apo form of hu-man PRMT5:MEP50 complex reveals sequential catalysis of symmetric methyl transfer
To Be Published
2YRS
DownloadVisualize
BU of 2yrs by Molmil
Human hemoglobin D Los Angeles: crystal structure
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Poy, C.D, Moreno, F, Bonini-Domingos, C.R, Filgueira de Azevedo Jr, W, Bonilla-Rodriguez, G.O.
Deposit date:2007-04-03
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Human Hemoglobin D Los Angeles: crystal structure
to be published
4XPN
DownloadVisualize
BU of 4xpn by Molmil
Crystal Structure of Protein Phosphate 1 complexed with PP1 binding domain of GADD34
Descriptor: GLYCEROL, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Choy, M.S, Peti, W, Page, R.
Deposit date:2015-01-17
Release date:2015-07-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.285 Å)
Cite:Structural and Functional Analysis of the GADD34:PP1 eIF2 alpha Phosphatase.
Cell Rep, 11, 2015
2YJ9
DownloadVisualize
BU of 2yj9 by Molmil
CATHEPSIN L WITH A NITRILE INHIBITOR
Descriptor: (2S,4R)-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]-1-[1-[4-(trifluoromethyl)phenyl]cyclopropyl]carbonyl-pyrrolidine-2-carboxamide, CATHEPSIN L1, GLYCEROL
Authors:Banner, D.W, Benz, J.M, Haap, W.
Deposit date:2011-05-19
Release date:2011-11-23
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Halogen Bonding at the Active Sites of Human Cathepsin L and Mek1 Kinase: Efficient Interactions in Different Environments.
Chemmedchem, 6, 2011
8BTM
DownloadVisualize
BU of 8btm by Molmil
Structural and functional studies of geldanamycin amide synthase ShGdmF
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, GdmF
Authors:Ewert, W, Zeilinger, C, Kirschning, A, Preller, M.
Deposit date:2022-11-29
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and functional studies of geldanamycin amide synthase ShGdmF
To Be Published
4XH7
DownloadVisualize
BU of 4xh7 by Molmil
Crystal structure of MUPP1 PDZ4
Descriptor: IMIDAZOLE, Multiple PDZ domain protein
Authors:Liu, Z, Zhu, H, Liu, W.
Deposit date:2015-01-05
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Biochemical and structural characterization of MUPP1-PDZ4 domain from Mus musculus.
Acta Biochim.Biophys.Sin., 47, 2015
6U5A
DownloadVisualize
BU of 6u5a by Molmil
Crystal structure of Equine Serum Albumin complex with 6-MNA
Descriptor: (6-methoxynaphthalen-2-yl)acetic acid, SULFATE ION, Serum albumin, ...
Authors:Czub, M.P, Handing, K.B, Venkataramany, B.S, Cymborowski, M.T, Shabalin, I.G, Satchell, K.J, Joachimiak, A, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-08-27
Release date:2019-09-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Albumin-Based Transport of Nonsteroidal Anti-Inflammatory Drugs in Mammalian Blood Plasma.
J.Med.Chem., 63, 2020
6U5Z
DownloadVisualize
BU of 6u5z by Molmil
Cryo-EM structure of E. coli LonA S679A
Descriptor: Lon protease
Authors:Botos, I, Lountos, G.T, Weimin, W, Wlodawer, A.
Deposit date:2019-08-28
Release date:2020-02-26
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of substrate-free E. coli Lon protease provides insights into the dynamics of Lon machinery
Curr Res Struct Biol, 1, 2020

224572

數據於2024-09-04公開中

PDB statisticsPDBj update infoContact PDBjnumon