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PDB: 12895 件

3SRY
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Engineered high-affinity halide-binding protein derived from YFP: halide-free
分子名称: Green fluorescent protein
著者Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
登録日2011-07-07
公開日2012-07-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.159 Å)
主引用文献Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SVB
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Engineered medium-affinity halide-binding protein derived from YFP: fluoride complex
分子名称: 1,2-ETHANEDIOL, Green fluorescent protein
著者Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
登録日2011-07-12
公開日2012-07-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SJI
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BU of 3sji by Molmil
crystal structure of CVA16 3C in complex with Rupintrivir (AG7088)
分子名称: 3C protease, 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER, SODIUM ION
著者Lu, G, Qi, J, Chen, Z, Xu, X, Gao, F, Lin, D, Qian, W, Liu, H, Jiang, H, Yan, J, Gao, G.F.
登録日2011-06-21
公開日2011-08-10
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献Enterovirus 71 and Coxsackievirus A16 3C Proteases: Binding to Rupintrivir and Their Substrates and Anti-Hand, Foot, and Mouth Disease Virus Drug Design.
J.Virol., 85, 2011
4D81
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Metallosphera sedula Vps4 crystal structure
分子名称: AAA ATPase, central domain protein, ADENOSINE-5'-DIPHOSPHATE
著者Caillat, C, Macheboeuf, P, Wu, Y, McCarthy, A.A, Boeri-Erba, E, Effantin, G, Gottlinger, H.G, Weissenhorn, W, Renesto, P.
登録日2014-12-02
公開日2015-11-25
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Asymmetric Ring Structure of Vps4 Required for Escrt-III Disassembly.
Nat.Commun., 6, 2015
3SNS
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BU of 3sns by Molmil
Crystal structure of the C-terminal domain of Escherichia coli lipoprotein BamC
分子名称: CHLORIDE ION, Lipoprotein 34
著者Kim, K.H, Aulakh, S, Tan, W, Paetzel, M.
登録日2011-06-29
公開日2011-08-24
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic analysis of the C-terminal domain of the Escherichia coli lipoprotein BamC.
Acta Crystallogr.,Sect.F, 67, 2011
4MOD
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BU of 4mod by Molmil
Structure of the MERS-CoV fusion core
分子名称: HR1 of S protein, LINKER, HR2 of S protein
著者Gao, J, Lu, G, Qi, J, Li, Y, Wu, Y, Deng, Y, Geng, H, Xiao, H, Tan, W, Yan, J, Gao, G.F.
登録日2013-09-12
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献Structure of the fusion core and inhibition of fusion by a heptad repeat peptide derived from the S protein of Middle East respiratory syndrome coronavirus.
J.Virol., 87, 2013
3S4C
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Lactose phosphorylase in complex with sulfate
分子名称: 1,4-DIETHYLENE DIOXIDE, Lactose Phosphorylase, SULFATE ION
著者Van Hoorebeke, A, Stout, J, Soetaert, W, Van Beeumen, J, Desmet, T, Savvides, S.
登録日2011-05-19
公開日2012-06-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Cellobiose phosphorylase: reconstructing the structural itinerary along the catalytic pathway
To be Published
8UKE
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Crystal Structure of Norbelladine O-methyltransferase variant in complex with SAH
分子名称: CALCIUM ION, Norbelladine 4'-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Kim, W, Zhang, Y.J.
登録日2023-10-12
公開日2024-03-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme.
Nat Commun, 15, 2024
3S57
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ABH2 cross-linked with undamaged dsDNA-1 containing cofactors
分子名称: 2-OXOGLUTARIC ACID, 5'-D(*CP*TP*GP*TP*CP*AP*TP*CP*AP*CP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*GP*TP*GP*AP*TP*GP*AP*CP*A)-3', ...
著者Yi, C, Chen, B, Qi, B, Ramirez, B, Zhang, W, Jia, G, Zhang, L, Li, C.Q, Dinner, A.R, Yang, C.-G, He, C.
登録日2011-05-20
公開日2012-06-06
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Duplex interrogation by a direct DNA repair protein in search of base damage
Nat.Struct.Mol.Biol., 19, 2012
8FHC
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Protein 41 with aldehyde deformylating oxidase activity from Gamma proteobacterium
分子名称: BROMIDE ION, CHOLIC ACID, FE (III) ION, ...
著者Arenas, R, Wilson, D.K, Mak, W.S, Siegel, J.B.
登録日2022-12-13
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2.097 Å)
主引用文献Protein 41 with aldehyde deformylating oxidase activity from Gamma proteobacterium
To Be Published
4MLP
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Mammalian cryptochrome in complex with a small molecule competitor of its ubiquitin ligase
分子名称: Cryptochrome-2, N-[(2S)-3-(9H-carbazol-9-yl)-2-hydroxypropyl]-N-(furan-2-ylmethyl)methanesulfonamide
著者Nangle, S, Xing, W, Zheng, N.
登録日2013-09-06
公開日2013-10-16
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.943 Å)
主引用文献Crystal structure of mammalian cryptochrome in complex with a small molecule competitor of its ubiquitin ligase.
Cell Res., 23, 2013
4I5M
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BU of 4i5m by Molmil
Selective & Brain-Permeable Polo-like Kinase-2 (Plk-2) Inhibitors that Reduce -Synuclein Phosphorylation in Rat Brain
分子名称: 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Serine/threonine-protein kinase PLK2
著者Aubele, D.L, Hom, R.K, Adler, M, Galemmo Jr, R.A, Bowers, S, Truong, A.P, Pan, H, Beroza, P, Neitz, R.J, Yao, N, Lin, M, Tonn, G, Zhang, H, Bova, M.P, Ren, Z, Tam, D, Ruslim, L, Baker, J, Diep, L, Fitzgerald, K, Hoffman, J, Motter, R, Fauss, D, Tanaka, P, Dappen, M, Jagodzinski, J, Chan, W, Konradi, A.W, Latimer, L, Zhu, Y.L, Artis, D.R, Sham, H.L, Anderson, J.P, Bergeron, M.
登録日2012-11-28
公開日2013-12-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Selective and brain-permeable polo-like kinase-2 (Plk-2) inhibitors that reduce alpha-synuclein phosphorylation in rat brain.
Chemmedchem, 8, 2013
4DDF
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BU of 4ddf by Molmil
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4
分子名称: CHLORIDE ION, Propanediol utilization polyhedral body protein PduT, SULFATE ION
著者Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
登録日2012-01-18
公開日2012-06-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
4DE6
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BU of 4de6 by Molmil
Horse spleen apo-ferritin complex with arachidonic acid
分子名称: ARACHIDONIC ACID, CADMIUM ION, Ferritin light chain, ...
著者Bu, W, Liu, R, Dmochowski, I.J, Loll, P.J, Eckenhoff, R.G.
登録日2012-01-19
公開日2012-03-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Ferritin couples iron and fatty acid metabolism.
Faseb J., 26, 2012
4DFM
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BU of 4dfm by Molmil
Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in ternary complex with 5-(aminopentinyl)-2-dCTP
分子名称: 1,2-ETHANEDIOL, 5'-d(AAAGCGCGCCGTGGTC)-3', 5'-d(GACCACGGCGC ddG)-3', ...
著者Bergen, K, Steck, A, Struett, S, Baccaro, A, Welte, W, Diederichs, K, Marx, A.
登録日2012-01-24
公開日2012-05-16
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.886 Å)
主引用文献Structures of KlenTaq DNA Polymerase Caught While Incorporating C5-Modified Pyrimidine and C7-Modified 7-Deazapurine Nucleoside Triphosphates.
J.Am.Chem.Soc., 134, 2012
4I6Z
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BU of 4i6z by Molmil
Crystal structure of the transcriptional regulator TM1030 with 24bp DNA oligonucleotide
分子名称: DNA OLIGONUCLEOTIDE, Transcriptional regulator, TetR family
著者Koclega, K.D, Chruszcz, M, Cooper, D.R, Petkowski, J.J, Tkaczuk, K.L, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
登録日2012-11-30
公開日2013-01-02
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of the transcriptional regulator TM1030 with 24bp DNA oligonucleotide
To be Published
8FHB
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Protein 32 with aldehyde deformylating oxidase activity from Synechococcus sp.
分子名称: FE (III) ION, tRNA-(MS[2]IO[6]A)-hydroxylase
著者Arenas, R, Wilson, D.K, Mak, W.S, Siegel, J.B.
登録日2022-12-13
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Protein 32 with aldehyde deformylating oxidase activity from Synechococcus sp.
To Be Published
4DZD
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BU of 4dzd by Molmil
Crystal structure of the CRISPR-associated protein Cas6e from Escherichia coli str. K-12
分子名称: GLYCEROL, Uncharacterized protein ygcH
著者Wei, J, Huang, G, Wang, Y, Gong, W.
登録日2012-03-01
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献Crystal Structure of endoribonuclease Cas6e from Escherichia coli
To be Published
4LVG
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Fragment-based Identification of Amides Derived From trans-2-(Pyridin-3-yl)cyclopropanecarboxylic Acid as Potent Inhibitors of Human Nicotinamide Phosphoribosyltransferase (NAMPT)
分子名称: (1S,2S)-N-[4-(phenylsulfonyl)phenyl]-2-(pyridin-3-yl)cyclopropanecarboxamide, 1,2-ETHANEDIOL, Nicotinamide phosphoribosyltransferase, ...
著者Giannetti, A.M, Zheng, X, Skelton, N, Wang, W, Bravo, B, Feng, Y, Gunzner-Toste, J, Ho, Y, Hua, R, Wang, C, Zhao, Q, Liederer, B.M, Liu, Y, O'Brien, T, Oeh, J, Sampath, D, Shen, Y, Wang, L, Wu, H, Xiao, Y, Yuen, P, Zak, M, Zhao, G, Dragovich, P.S.
登録日2013-07-26
公開日2013-09-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.702 Å)
主引用文献Identification of amides derived from 1H-pyrazolo[3,4-b]pyridine-5-carboxylic acid as potent inhibitors of human nicotinamide phosphoribosyltransferase (NAMPT).
Bioorg.Med.Chem.Lett., 23, 2013
3S94
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Crystal structure of LRP6-E1E2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Low-density lipoprotein receptor-related protein 6
著者Cheng, Z, Xu, W.
登録日2011-05-31
公開日2011-11-02
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structures of the extracellular domain of LRP6 and its complex with DKK1.
Nat.Struct.Mol.Biol., 18, 2011
5U5C
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Coiled Coil Peptide Metal Coordination Framework: Tetramer Fold
分子名称: COPPER (II) ION, Designed tetrameric coiled coil peptide with one terpyridine side chain, HEXANE-1,6-DIOL
著者Tavenor, N.A, Murnin, M.J, Horne, W.S.
登録日2016-12-06
公開日2017-02-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Supramolecular Metal-Coordination Polymers, Nets, and Frameworks from Synthetic Coiled-Coil Peptides.
J. Am. Chem. Soc., 139, 2017
4IAR
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Crystal structure of the chimeric protein of 5-HT1B-BRIL in complex with ergotamine (PSI Community Target)
分子名称: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Chimera protein of human 5-hydroxytryptamine receptor 1B and E. Coli soluble cytochrome b562, Ergotamine
著者Wang, C, Jiang, Y, Ma, J, Wu, H, Wacker, D, Katritch, V, Han, G.W, Liu, W, Huang, X, Vardy, E, McCorvy, J.D, Gao, X, Zhou, E.X, Melcher, K, Zhang, C, Bai, F, Yang, H, Yang, L, Jiang, H, Roth, B.L, Cherezov, V, Stevens, R.C, Xu, H.E, GPCR Network (GPCR)
登録日2012-12-07
公開日2013-03-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for molecular recognition at serotonin receptors.
Science, 340, 2013
8UEU
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In-situ complex I, Deactive class03
分子名称: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ...
著者Zheng, W, Zhu, J, Zhang, K.
登録日2023-10-02
公開日2024-06-19
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 2024
8UGE
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In-situ complex III, state II
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
著者Zheng, W, Zhang, K, Zhu, J.
登録日2023-10-05
公開日2024-06-19
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献High-resolution in situ structures of mammalian respiratory supercomplexes.
Nature, 2024
4M1K
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Crystal structure of elongation factor G (EFG)
分子名称: Elongation factor G, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Liu, G, Dong, J, Gong, W, Qin, Y.
登録日2013-08-02
公開日2014-08-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.952 Å)
主引用文献Crystal structure of elongation factor G (EFG)
To be published

222415

件を2024-07-10に公開中

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