Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12895 件

8QQ0
DownloadVisualize
BU of 8qq0 by Molmil
SARS-CoV-2 S protein bound to neutralising antibody UZGENT_A3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Remaut, H, Reiter, D, Vandenkerckhove, L, Acar, D.D, Witkowski, W, Gerlo, S.
登録日2023-10-03
公開日2024-01-31
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Integrating artificial intelligence-based epitope prediction in a SARS-CoV-2 antibody discovery pipeline: caution is warranted.
Ebiomedicine, 100, 2024
8SFY
DownloadVisualize
BU of 8sfy by Molmil
Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with UDP-glucose
分子名称: UDP-glycosyltransferase 202A2, URIDINE-5'-DIPHOSPHATE-GLUCOSE
著者Arriaza, R.H, Daneshian, L, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
登録日2023-04-11
公開日2023-09-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with UDP-glucose
To Be Published
8SFU
DownloadVisualize
BU of 8sfu by Molmil
Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin
分子名称: (2S)-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-1-benzopyran-7-yl 2-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside, UDP-glycosyltransferase 202A2, URIDINE-5'-DIPHOSPHATE
著者Arriaza, R.H, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
登録日2023-04-11
公開日2023-09-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin
To Be Published
8SAI
DownloadVisualize
BU of 8sai by Molmil
Cryo-EM structure of GPR34-Gi complex
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
著者Yong, X.H, Zhao, C, Yan, W, Shao, Z.H.
登録日2023-04-01
公開日2023-10-04
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献Cryo-EM structures of human GPR34 enable the identification of selective antagonists.
Proc.Natl.Acad.Sci.USA, 120, 2023
5E5G
DownloadVisualize
BU of 5e5g by Molmil
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase with D-tryptophan bound in the tryptophan and phenylalanine binding sites
分子名称: 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, D-TRYPTOPHAN, MANGANESE (II) ION, ...
著者Reichau, S, Jiao, W, Parker, E.J.
登録日2015-10-08
公開日2016-06-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Probing the Sophisticated Synergistic Allosteric Regulation of Aromatic Amino Acid Biosynthesis in Mycobacterium tuberculosis Using -Amino Acids.
Plos One, 11, 2016
4PIO
DownloadVisualize
BU of 4pio by Molmil
Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N-dimethylhistidine and SAH
分子名称: CHLORIDE ION, Histidine-specific methyltransferase EgtD, MAGNESIUM ION, ...
著者Vit, A, Seebeck, F.P, Blankenfeldt, W.
登録日2014-05-09
公開日2014-12-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.506 Å)
主引用文献Ergothioneine Biosynthetic Methyltransferase EgtD Reveals the Structural Basis of Aromatic Amino Acid Betaine Biosynthesis.
Chembiochem, 16, 2015
3MW1
DownloadVisualize
BU of 3mw1 by Molmil
p38 kinase Crystal structure in complex with small molecule inhibitor
分子名称: 8-(2,6-dichlorophenyl)-4-(2,4-difluorophenyl)-2-piperidin-4-yl-1,7-naphthyridine 7-oxide, Mitogen-activated protein kinase 14
著者Segarra, V, Caturla, F, Lumeras, W, Roca, R, Fisher, M, Lamers, M.
登録日2010-05-05
公開日2011-04-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献1,7-Naphthyridine 1-Oxides as Novel Potent and Selective Inhibitors of p38 Mitogen Activated Protein Kinase
J.Med.Chem., 54, 2011
6TJL
DownloadVisualize
BU of 6tjl by Molmil
Mature primitive pytochelatin synthase Alr0975 from Nostoc species bound to glutathione
分子名称: Alr0975 protein, CALCIUM ION, GLUTATHIONE
著者Feiler, C.G, Blankenfeldt, W.
登録日2019-11-26
公開日2020-12-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Mature primitive pytochelatin synthase Alr0975 from Nostoc species bound to glutathione
To Be Published
1RS7
DownloadVisualize
BU of 1rs7 by Molmil
Rat neuronal NOS heme domain with D-phenylalanine-D-nitroarginine amide bound
分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, D-MANNITOL, ...
著者Flinspach, M, Li, H, Jamal, J, Yang, W, Huang, H, Silverman, R.B, Poulos, T.L.
登録日2003-12-09
公開日2004-05-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structures of the Neuronal and Endothelial Nitric Oxide Synthase Heme Domain with d-Nitroarginine-Containing Dipeptide Inhibitors Bound.
Biochemistry, 43, 2004
5DLM
DownloadVisualize
BU of 5dlm by Molmil
Complex of Influenza M2e and Antibody
分子名称: Heavy chain of monoclonal antibody, Light chain of monoclonal antibody, Matrix protein 2, ...
著者Cho, K.J, Schepens, B, Moonens, K, Deng, L, Fiers, W, Remaut, H, Saelens, X.
登録日2015-09-07
公開日2015-10-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of the Conserved Amino Terminus of the Extracellular Domain of Matrix Protein 2 of Influenza A Virus Gripped by an Antibody.
J.Virol., 90, 2015
1RVD
DownloadVisualize
BU of 1rvd by Molmil
H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA,GAMMA-IMIDO-GTP
分子名称: 3-AMINOBENZOPHENONE-4-YL-AMINOHYDROXYPHOSPHINYLAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, TRANSFORMING PROTEIN P21/H-RAS-1
著者Ahmadian, M.R, Zor, T, Vogt, D, Kabsch, W, Selinger, Z, Wittinghofer, A, Scheffzek, K.
登録日1999-05-03
公開日1999-05-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Guanosine triphosphatase stimulation of oncogenic Ras mutants.
Proc.Natl.Acad.Sci.USA, 96, 1999
3MYG
DownloadVisualize
BU of 3myg by Molmil
Aurora A Kinase complexed with SCH 1473759
分子名称: 2-{ethyl[(5-{[6-methyl-3-(1H-pyrazol-4-yl)imidazo[1,2-a]pyrazin-8-yl]amino}isothiazol-3-yl)methyl]amino}-2-methylpropan-1-ol, Serine/threonine-protein kinase 6, TETRAETHYLENE GLYCOL
著者Hruza, A, Prosis, W, Ramanathan, L.
登録日2010-05-10
公開日2010-07-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of a Potent, Injectable Inhibitor of Aurora Kinases Based on the Imidazo-[1,2-a]-Pyrazine Core.
ACS Med Chem Lett, 1, 2010
8SO0
DownloadVisualize
BU of 8so0 by Molmil
Cryo-EM structure of the PP2A:B55-FAM122A complex
分子名称: FE (III) ION, PPP2R1A-PPP2R2A-interacting phosphatase regulator 1, Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform, ...
著者Fuller, J.R, Padi, S.K.R, Peti, W, Page, R.
登録日2023-04-28
公開日2023-10-25
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (2.79961 Å)
主引用文献Cryo-EM structures of PP2A:B55-FAM122A and PP2A:B55-ARPP19.
Nature, 625, 2024
6TJX
DownloadVisualize
BU of 6tjx by Molmil
Cryo-EM structure of TypeII tau filaments extracted from the brains of individuals with Corticobasal degeneration
分子名称: Microtubule-associated protein tau
著者Zhang, W, Murzin, A.G, Falcon, B, Shi, Y, Goedert, M, Scheres, S.H.W.
登録日2019-11-27
公開日2020-02-05
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Novel tau filament fold in corticobasal degeneration.
Nature, 580, 2020
3TB2
DownloadVisualize
BU of 3tb2 by Molmil
1-Cys peroxidoxin from Plasmodium Yoelli
分子名称: 1,2-ETHANEDIOL, 1-Cys peroxiredoxin, GLYCEROL, ...
著者Qiu, W, Artz, J.D, Vedadi, M, Sharma, S, Houston, S, Lew, J, Wasney, G, Amani, M, Xu, X, Bray, J, Sundstrom, M, Arrowsmith, C, Edwards, A, Hui, R, Bochkarev, A, Structural Genomics Consortium (SGC)
登録日2011-08-04
公開日2011-10-19
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.
Mol.Biochem.Parasitol., 151, 2007
5H0S
DownloadVisualize
BU of 5h0s by Molmil
EM Structure of VP1A and VP1B
分子名称: VP1
著者Li, X, Zhou, N, Xu, B, Chen, W, Zhu, B, Wang, X, Wang, J, Liu, H, Cheng, L.
登録日2016-10-06
公開日2017-01-25
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Near-Atomic Resolution Structure Determination of a Cypovirus Capsid and Polymerase Complex Using Cryo-EM at 200kV
J. Mol. Biol., 429, 2017
6TN6
DownloadVisualize
BU of 6tn6 by Molmil
X-ray structure of the endo-beta-1,4-mannanase from Thermotoga petrophila
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者da Silva, V.M, Squina, F.M, Sperenca, M, Martin, L, Muniz, J.R.C, Garcia, W, Nicolet, Y.
登録日2019-12-06
公開日2020-04-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献High-resolution structure of a modular hyperthermostable endo-beta-1,4-mannanase from Thermotoga petrophila: The ancillary immunoglobulin-like module is a thermostabilizing domain.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
6TSI
DownloadVisualize
BU of 6tsi by Molmil
cd1 nitrite reductase NirS with bound dihydro-heme d1
分子名称: CHLORIDE ION, HEME C, HEME D, ...
著者Kluenemann, T, Blankenfeldt, W.
登録日2019-12-20
公開日2020-11-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Structure of heme d 1 -free cd 1 nitrite reductase NirS.
Acta Crystallogr.,Sect.F, 76, 2020
4PDO
DownloadVisualize
BU of 4pdo by Molmil
Structure of Ephrin type-A receptor 2
分子名称: Ephrin type-A receptor 2
著者Jimin, Z, Qiang, W, Zongchao, J.
登録日2014-04-19
公開日2014-05-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献Structure of Ephrin type-A receptor 2
To Be Published
6VCC
DownloadVisualize
BU of 6vcc by Molmil
Cryo-EM structure of the Dvl2 DIX filament
分子名称: Segment polarity protein dishevelled homolog DVL-2
著者Enos, M, Kan, W, Muennich, S, Chen, D.H, Skiniotis, G, Weis, W.I.
登録日2019-12-20
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Limited Dishevelled/Axin oligomerization determines efficiency of Wnt/ beta-catenin signal transduction.
Elife, 9, 2020
5GLI
DownloadVisualize
BU of 5gli by Molmil
Human endothelin receptor type-B in the ligand-free form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Endothelin Receptor Subtype-B, OLEIC ACID, ...
著者Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T.
登録日2016-07-11
公開日2016-09-07
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
6V5B
DownloadVisualize
BU of 6v5b by Molmil
Human Drosha and DGCR8 in complex with Primary MicroRNA (MP/RNA complex) - Active state
分子名称: CALCIUM ION, Microprocessor complex subunit DGCR8, Pri-miR-16-2 (78-MER), ...
著者Partin, A, Zhang, K, Jeong, B, Herrell, E, Li, S, Chiu, W, Nam, Y.
登録日2019-12-04
公開日2020-04-08
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Cryo-EM Structures of Human Drosha and DGCR8 in Complex with Primary MicroRNA.
Mol.Cell, 78, 2020
6VCN
DownloadVisualize
BU of 6vcn by Molmil
Crystal structure of E.coli RppH in complex with ppcpG
分子名称: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, RNA pyrophosphohydrolase, SULFATE ION
著者Gao, A, Vasilyev, N, Kaushik, A, Duan, W, Serganov, A.
登録日2019-12-21
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Principles of RNA and nucleotide discrimination by the RNA processing enzyme RppH.
Nucleic Acids Res., 48, 2020
5GJC
DownloadVisualize
BU of 5gjc by Molmil
Zika virus NS3 helicase in complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, NS3 helicase
著者Tian, H.L, Ji, X.Y, Yang, X.Y, Zhang, Z.X, Lu, Z.K, Yang, K.L, Chen, C, Zhao, Q, Chi, H, Mu, Z.Y, Xie, W, Wang, Z.F, Lou, H.Q, Yang, H.T, Rao, Z.H.
登録日2016-06-28
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Structural basis of Zika virus helicase in recognizing its substrates
Protein Cell, 7, 2016
6VCS
DownloadVisualize
BU of 6vcs by Molmil
SRA domain of UHRF1 in complex with DNA
分子名称: DNA (5'-D(*GP*CP*CP*TP*GP*TP*AP*CP*AP*GP*GP*C)-3'), E3 ubiquitin-protein ligase UHRF1, UNK-UNK-UNK-UNK, ...
著者Dong, C, Tempel, W, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC)
登録日2019-12-22
公開日2020-03-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献SRA domain of UHRF1 in complex with DNA
To Be Published

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon