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PDB: 12487 results

5THA
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BU of 5tha by Molmil
Gemin5 WD40 repeats in complex with a guanosyl moiety
Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, Gem-associated protein 5, UNKNOWN ATOM OR ION
Authors:Chao, X, Tempel, W, Bian, C, Cerovina, T, He, H, Seitova, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2016-09-29
Release date:2016-10-19
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly.
Genes Dev., 30, 2016
5T4S
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BU of 5t4s by Molmil
Novel Approach of Fragment-Based Lead Discovery applied to Renin Inhibitors
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-chloro-N-[(furan-2-yl)methyl]pyrazin-2-amine, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Oki, H, Sang, B.C, Lane, W.
Deposit date:2016-08-30
Release date:2016-10-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Novel approach of fragment-based lead discovery applied to renin inhibitors.
Bioorg.Med.Chem., 24, 2016
5SY3
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BU of 5sy3 by Molmil
Structure-based design of a new series of N-piperidin-3-ylpyrimidine-5-carboxamides as renin inhibitors
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.C, Lane, W.
Deposit date:2016-08-10
Release date:2016-11-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors.
Bioorg.Med.Chem., 24, 2016
3FFO
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BU of 3ffo by Molmil
F17b-G lectin domain with bound GlcNAc(beta1-2)man
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose, Adhesin, ...
Authors:Buts, L, De Boer, A, Olsson, J.D.M, Jonckheere, W, De Kerpel, M, De Genst, E, Guerardel, Y, Willaert, R, Wyns, L, Wuhrer, M, Oscarson, S, De Greve, H, Bouckaert, J.
Deposit date:2008-12-04
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli.
Biology (Basel), 2, 2013
3F6J
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BU of 3f6j by Molmil
F17a-G lectin domain with bound GlcNAc(beta1-3)Gal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-methyl beta-D-galactopyranoside, F17a-G
Authors:Buts, L, de Boer, A, Olsson, J.D.M, Jonckheere, W, De Kerpel, M, De Genst, E, Guerardel, Y, Willaert, R, Wyns, L, Wuhrer, M, Oscarson, S, De Greve, H, Bouckaert, J.
Deposit date:2008-11-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli
Biology, 2, 2013
5W49
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BU of 5w49 by Molmil
The crystal structure of human S-adenosylhomocysteine hydrolase (AHCY) bound to oxadiazole inhibitor
Descriptor: (4-amino-1,2,5-oxadiazol-3-yl)[(3R)-3-{4-[(3-methoxyphenyl)amino]-6-methylpyridin-2-yl}pyrrolidin-1-yl]methanone, 1,2-ETHANEDIOL, Adenosylhomocysteinase, ...
Authors:Dougan, D.R, Lawson, J.D, Lane, W.
Deposit date:2017-06-09
Release date:2017-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of AHCY inhibitors using novel high-throughput mass spectrometry.
Biochem. Biophys. Res. Commun., 491, 2017
3GMT
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BU of 3gmt by Molmil
Crystal structure of adenylate kinase from burkholderia pseudomallei
Descriptor: Adenylate kinase, SULFATE ION
Authors:Abendroth, J, Staker, B.L, Robinson, H, Buchko, G.W, Hewitt, S.N, Napuli, A.J, Van Voorhis, W, Stacy, R, Myler, P.J, Stewart, L, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-03-15
Release date:2009-06-02
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural characterization of Burkholderia pseudomallei adenylate kinase (Adk): profound asymmetry in the crystal structure of the 'open' state.
Biochem.Biophys.Res.Commun., 394, 2010
4BG7
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BU of 4bg7 by Molmil
Bacteriophage T5 Homolog of the Eukaryotic Transcription Coactivator PC4 Implicated in Recombination-Dependent DNA Replication
Descriptor: PUTATIVE TRANSCRIPTIONAL COACTIVATOR P15
Authors:Steigemann, B, Schulz, A, Hinrichs, W, Werten, S.
Deposit date:2013-03-24
Release date:2013-09-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Bacteriophage T5 Encodes a Homolog of the Eukaryotic Transcription Coactivator Pc4 Implicated in Recombination-Dependent DNA Replication.
J.Mol.Biol., 425, 2013
3GXL
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BU of 3gxl by Molmil
ALK-5 kinase complex with GW857175
Descriptor: N-1H-indazol-5-yl-2-(6-methylpyridin-2-yl)quinazolin-4-amine, TGF-beta receptor type-1
Authors:Smith, W, Janson, C.
Deposit date:2009-04-02
Release date:2009-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design of novel quinazoline derivatives and related analogues as potent and selective ALK5 inhibitors
Bioorg.Med.Chem.Lett., 19, 2009
3GJZ
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BU of 3gjz by Molmil
Crystal structure of microcin immunity protein MccF from Bacillus anthracis str. Ames
Descriptor: Microcin immunity protein MccF
Authors:Nocek, B, Zhou, M, Kwon, K, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-03-09
Release date:2009-04-14
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Functional Characterization of Microcin C Resistance Peptidase MccF from Bacillus anthracis.
J.Mol.Biol., 420, 2012
3H9E
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BU of 3h9e by Molmil
Crystal structure of human sperm-specific glyceraldehyde-3-phosphate dehydrogenase (GAPDS) complex with NAD and phosphate
Descriptor: 1,2-ETHANEDIOL, Glyceraldehyde-3-phosphate dehydrogenase, testis-specific, ...
Authors:Chaikuad, A, Shafqat, N, Yue, W, Cocking, R, Bray, J.E, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2009-04-30
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structure and kinetic characterization of human sperm-specific glyceraldehyde-3-phosphate dehydrogenase, GAPDS.
Biochem.J., 435, 2011
3H9F
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BU of 3h9f by Molmil
Crystal Structure of Human Dual Specificity Protein Kinase (TTK) in complex with a pyrimido-diazepin ligand
Descriptor: 9-cyclopentyl-2-(4-(4-hydroxypiperidin-1-yl)-2-methoxyphenylamino)-5-methyl-8,9-dihydro-5H-pyrimido[4,5-b][1,4]diazepin -6(7H)-one, Dual specificity protein kinase TTK, MAGNESIUM ION
Authors:Filippakopoulos, P, Soundararajan, M, Keates, T, Elkins, J.M, King, O, Fedorov, O, Picaud, S.S, Pike, A.C.W, Yue, W, Chaikuad, A, von Delft, F, Arrowsmith, C.H, Edwards, A, Weigelt, J, Bountra, C, Kwiatkowski, N, Gray, N.S, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2009-04-30
Release date:2009-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Small-molecule kinase inhibitors provide insight into Mps1 cell cycle function.
Nat.Chem.Biol., 6, 2010
7K6Q
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BU of 7k6q by Molmil
Active state Dot1 bound to the H4K16ac nucleosome
Descriptor: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Truong, D.M, Lee, R, Armache, J.-P, Boeke, J.D, Armache, K.-J.
Deposit date:2020-09-21
Release date:2021-02-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation.
Science, 371, 2021
7K6P
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BU of 7k6p by Molmil
Active state Dot1 bound to the unacetylated H4 nucleosome
Descriptor: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Truong, D.M, Lee, R, Armache, J.-P, Boeke, J.D, Armache, K.-J.
Deposit date:2020-09-21
Release date:2021-02-10
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation.
Science, 371, 2021
7E4Z
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BU of 7e4z by Molmil
Crystal structure of tubulin in complex with Maytansinol
Descriptor: (1R,2S,3S,5S,6S,16E,18E,20R,21S)-11-chloro-6,21-dihydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaene-8,23-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Wang, Y, Li, W.
Deposit date:2021-02-16
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:C3 ester side chain plays a pivotal role in the antitumor activity of Maytansinoids.
Biochem.Biophys.Res.Commun., 566, 2021
7E4Q
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BU of 7e4q by Molmil
Crystal structure of tubulin in complex with L-DM1-SMe
Descriptor: (1S,2R,3R,5R,6R,16E,18E,20R,21S)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl (2S)-2-{methyl[3-(methyldisulfanyl)propanoyl]amino}propanoate (non-preferred name), 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Wang, Y, Li, W.
Deposit date:2021-02-14
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:C3 ester side chain plays a pivotal role in the antitumor activity of Maytansinoids.
Biochem.Biophys.Res.Commun., 566, 2021
7E4R
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BU of 7e4r by Molmil
Crystal structure of tubulin in complex with D-DM1-SMe
Descriptor: (10E,12E)-86-chloro-14-hydroxy-85,14-dimethoxy-33,2,7,10-tetramethyl-12,6-dioxo-7-aza-1(6,4)-oxazinana-3(2,3)-oxirana-8(1,3)-benzenacyclotetradecaphane-10,12-dien-4-yl N-methyl-N-(3-(methylsulfinothioyl)propanoyl)-D-alaninate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Wang, Y, Li, W.
Deposit date:2021-02-15
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:C3 ester side chain plays a pivotal role in the antitumor activity of Maytansinoids.
Biochem.Biophys.Res.Commun., 566, 2021
3MEZ
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BU of 3mez by Molmil
X-ray structural analysis of a mannose specific lectin from dutch crocus (crocus vernus)
Descriptor: FORMIC ACID, GLYCEROL, Mannose-specific lectin 3 chain 1, ...
Authors:Akrem, A, Meyer, A, Perbandt, M, Voelter, W, Buck, F, Betzel, C.
Deposit date:2010-04-01
Release date:2011-06-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:X-ray structural analysis of a mannose specific lectin from dutch crocus (crocus vernus)
To be Published
4QB5
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BU of 4qb5 by Molmil
Crystal structure of a glyoxalase/bleomycin resistance protein from Albidiferax ferrireducens T118
Descriptor: 1,2-ETHANEDIOL, Glyoxalase/bleomycin resistance protein/dioxygenase, SULFATE ION
Authors:Kumaran, D, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, Lafleur, J, Seidel, R, Villigas, G, Zencheck, W, Al Obaidi, N, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-05-06
Release date:2014-07-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of a glyoxalase/bleomycin resistance protein from Albidiferax ferrireducens T118
To be Published
7DTL
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BU of 7dtl by Molmil
Crystal structure of PSK, an antimicrobial peptide from Chrysomya megacephala
Descriptor: PSK
Authors:Xiao, C, Xiao, Z, Wang, S, Liu, W.
Deposit date:2021-01-05
Release date:2021-07-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal and solution structures of a novel antimicrobial peptide from Chrysomya megacephala.
Acta Crystallogr D Struct Biol, 77, 2021
7E44
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BU of 7e44 by Molmil
Crystal structure of NudC complexed with dpCoA
Descriptor: DEPHOSPHO COENZYME A, NADH pyrophosphatase, ZINC ION
Authors:Zhou, W, Guan, Z.Y, Yin, P, Zhang, D.L.
Deposit date:2021-02-10
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into dpCoA-RNA decapping by NudC.
Rna Biol., 18, 2021
2JU6
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BU of 2ju6 by Molmil
Solid-State Protein Structure Determination with Proton-Detected Triple Resonance 3D Magic-Angle Spinning NMR Spectroscopy
Descriptor: Immunoglobulin G-binding protein G
Authors:Zhou, D.H, Shea, J.J, Nieuwkoop, A.J, Franks, W, Wylie, B.J, Mullen, C, Sandoz, D, Rienstra, C.M.
Deposit date:2007-08-15
Release date:2007-12-04
Last modified:2024-05-29
Method:SOLID-STATE NMR
Cite:Solid-State Protein-Structure Determination with Proton-Detected Triple-Resonance 3D Magic-Angle-Spinning NMR Spectroscopy.
Angew.Chem.Int.Ed.Engl., 46, 2007
7EKJ
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BU of 7ekj by Molmil
Crystals structure of classical swine fever virus NS5B (residues 91-694)
Descriptor: Classical swine fever virus NS5B
Authors:Liu, W, Gong, P.
Deposit date:2021-04-05
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:An induced-fit de novo initiation mechanism suggested by a pestivirus RNA-dependent RNA polymerase.
Nucleic Acids Res., 49, 2021
8CBL
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BU of 8cbl by Molmil
Structure of human mitochondrial RNase Z in complex with mitochondrial pre-tRNA-His(0,Ser)
Descriptor: 3-hydroxyacyl-CoA dehydrogenase type-2, Mitochondrial Precursor tRNA-His(0,Ser), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:MEYNIER, V, HARDWICK, S, CATALA, M, ROSKE, J, OERUM, S, CHIRGADZE, D, BARRAUD, P, YU, W, LUISI, B, TISNE, C.
Deposit date:2023-01-25
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Structural basis for human mitochondrial tRNA maturation.
Nat Commun, 15, 2024
7DUF
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BU of 7duf by Molmil
Crystal structure of VIM1 PHD finger.
Descriptor: E3 ubiquitin-protein ligase ORTHRUS 2, ZINC ION
Authors:Abhishek, S, Deeksha, W, Patel, D.J, Rajakumara, E.
Deposit date:2021-01-08
Release date:2021-08-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Helical and beta-Turn Conformations in the Peptide Recognition Regions of the VIM1 PHD Finger Abrogate H3K4 Peptide Recognition.
Biochemistry, 60, 2021

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