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PDB: 12487 件

4JYK
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BU of 4jyk by Molmil
Structure of E. coli Transcriptional Regulator RutR with bound uracil
分子名称: HTH-type transcriptional regulator RutR, SULFATE ION, URACIL
著者Cooper, D.R, Knapik, A.A, Petkowski, J.J, Porebski, P.J, Osinski, T, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-03-29
公開日2013-08-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of E. coli Transcriptional Regulator RutR with bound uracil
To be Published
3S24
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BU of 3s24 by Molmil
Crystal structure of human mRNA guanylyltransferase
分子名称: SULFATE ION, mRNA-capping enzyme
著者Das, K, Chu, C, Thyminski, J.R, Bauman, J.D, Guan, R, Qiu, W, Montelione, G.T, Arnold, E, Shatkin, A.J.
登録日2011-05-16
公開日2011-06-15
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.0137 Å)
主引用文献Structure of the guanylyltransferase domain of human mRNA capping enzyme.
Proc.Natl.Acad.Sci.USA, 108, 2011
4JZ2
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BU of 4jz2 by Molmil
Crystal structure of Co ion substituted SOD2 from Clostridium difficile
分子名称: COBALT (II) ION, Superoxide dismutase
著者Li, W, Ying, T.L, Wang, C.L, Zhao, Y, Wang, H.F, Tan, X.S.
登録日2013-04-02
公開日2014-04-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of Co ion substituted SOD2 from Clostridium difficile
To be Published
4K67
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Structure of an airborne transmissible avian influenza H5 hemagglutinin mutant from the influenza virus A/Indonesia/5/2005 complexed with human receptor analog LSTc
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose, ...
著者Zhang, W, Shi, Y, Lu, X, Shu, Y, Gao, G.F.
登録日2013-04-15
公開日2013-05-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献An airborne transmissible avian influenza H5 hemagglutinin seen at the atomic level.
Science, 340, 2013
3TY0
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BU of 3ty0 by Molmil
Structure of PPARgamma ligand binding domain in complex with (R)-5-(3-((3-(6-methoxybenzo[d]isoxazol-3-yl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)methyl)phenyl)-5-methyloxazolidine-2,4-dione
分子名称: (5R)-5-(3-{[3-(6-methoxy-1,2-benzoxazol-3-yl)-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl]methyl}phenyl)-5-methyl-1,3-oxazolidine-2,4-dione, Peroxisome proliferator-activated receptor gamma
著者Soisson, S.M, Meinke, P.M, McKeever, B, Liu, W.
登録日2011-09-23
公開日2011-11-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Benzimidazolones: a new class of selective peroxisome proliferator-activated receptor gamma (PPAR-gamma) modulators.
J.Med.Chem., 54, 2011
4K8Z
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BU of 4k8z by Molmil
KOD Polymerase in binary complex with dsDNA
分子名称: 1,2-ETHANEDIOL, COBALT HEXAMMINE(III), DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3'), ...
著者Bergen, K, Betz, K, Welte, W, Diederichs, K, Marx, A.
登録日2013-04-19
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex
Chembiochem, 14, 2013
3U1U
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BU of 3u1u by Molmil
Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain
分子名称: GLYCEROL, RNA polymerase-associated protein RTF1 homolog, SULFATE ION, ...
著者Guo, Y, Tempel, W, Bian, C, Wernimont, A.K, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
登録日2011-09-30
公開日2012-04-04
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain
to be published
4KCT
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BU of 4kct by Molmil
Pyruvate kinase (PYK) from Trypanosoma brucei soaked with Oxaloacetate
分子名称: 2,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, MAGNESIUM ION, ...
著者Zhong, W, Morgan, H.P, McNae, I.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
登録日2013-04-24
公開日2014-01-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Pyruvate kinases have an intrinsic and conserved decarboxylase activity.
Biochem.J., 458, 2014
4KCV
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BU of 4kcv by Molmil
Pyruvate kinase (PYK) from Trypanosoma brucei soaked with 2-oxoglutaric acid
分子名称: 2,6-di-O-phosphono-beta-D-fructofuranose, 2-OXOGLUTARIC ACID, GLYCEROL, ...
著者Zhong, W, Morgan, H.P, McNae, I.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
登録日2013-04-24
公開日2014-01-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Pyruvate kinases have an intrinsic and conserved decarboxylase activity.
Biochem.J., 458, 2014
4KDO
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BU of 4kdo by Molmil
Crystal structure of the hemagglutinin of ferret-transmissible H5N1 virus in complex with human receptor analog LSTc
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
著者Lu, X, Shi, Y, Zhang, W, Zhang, Y, Qi, J, Gao, G.F.
登録日2013-04-25
公開日2013-07-24
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.396 Å)
主引用文献Structure and receptor-binding properties of an airborne transmissible avian influenza A virus hemagglutinin H5 (VN1203mut).
Protein Cell, 4, 2013
3U48
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BU of 3u48 by Molmil
From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis
分子名称: CALCIUM ION, JMB19063, beta-D-glucopyranose
著者McAndrew, R.P, Park, J.I, Reindl, W, Friedland, G.D, D'haeseleer, P, Northen, T, Sale, K.L, Simmons, B.A, Adams, P.D.
登録日2011-10-07
公開日2013-04-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis
To be Published
4KJM
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BU of 4kjm by Molmil
Crystal structure of the Staphylococcus aureus protein (NP_646141.1, domain 3912-4037) similar to streptococcal adhesins emb and ebhA/ebhB
分子名称: ACETATE ION, CHLORIDE ION, Extracellular matrix-binding protein ebh, ...
著者Cymborowski, M, Shabalin, I.G, Joachimiak, G, Chruszcz, M, Gornicki, P, Zhang, R, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics, Midwest Center for Structural Genomics (MCSG)
登録日2013-05-03
公開日2013-05-29
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the Staphylococcus aureus protein (NP_646141.1, domain 3912-4037) similar to streptococcal adhesins emb and ebhA/ebhB
To be Published
3SVB
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BU of 3svb by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: fluoride complex
分子名称: 1,2-ETHANEDIOL, Green fluorescent protein
著者Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
登録日2011-07-12
公開日2012-07-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
3SZU
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BU of 3szu by Molmil
IspH:HMBPP complex structure of E126Q mutant
分子名称: (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER
著者Span, I, Graewert, T, Bacher, A, Eisenreich, W, Groll, M.
登録日2011-07-19
公開日2011-11-30
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal Structures of Mutant IspH Proteins Reveal a Rotation of the Substrate's Hydroxymethyl Group during Catalysis.
J.Mol.Biol., 416, 2012
3SZG
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BU of 3szg by Molmil
Crystal structure of C176A glutamine-dependent NAD+ synthetase from M. tuberculosis bound to AMP/PPi and NaAD+
分子名称: ADENOSINE MONOPHOSPHATE, GLYCEROL, Glutamine-dependent NAD(+) synthetase, ...
著者Chuenchor, W, Doukov, T, Gerratana, B.
登録日2011-07-19
公開日2012-04-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Regulation of the intersubunit ammonia tunnel in Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase.
Biochem.J., 443, 2012
4HFG
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BU of 4hfg by Molmil
CID of human RPRD1B
分子名称: Regulation of nuclear pre-mRNA domain-containing protein 1B, SULFATE ION, UNKNOWN ATOM OR ION
著者Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC)
登録日2012-10-05
公開日2012-10-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献CID of human RPRD1B
TO BE PUBLISHED
4H75
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BU of 4h75 by Molmil
Crystal structure of human Spindlin1 in complex with a histone H3K4(me3) peptide
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Histone H3, ...
著者Yang, N, Wang, W, Wang, Y, Wang, M, Zhao, Q, Rao, Z, Zhu, B, Xu, R.M.
登録日2012-09-20
公開日2012-10-03
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.098 Å)
主引用文献Distinct mode of methylated lysine-4 of histone H3 recognition by tandem tudor-like domains of Spindlin1.
Proc.Natl.Acad.Sci.USA, 109, 2012
4HGX
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BU of 4hgx by Molmil
Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand
分子名称: ACETATE ION, Xylose isomerase domain containing protein, ZINC ION
著者Boyko, K.M, Gorbacheva, M.A, Korzhenevskiy, D.A, Dorovatovsky, P.V, Rakitina, T.V, Lipkin, A.V, Shumilin, I.A, Minor, W, Popov, V.O.
登録日2012-10-09
公開日2012-10-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of xylose isomerase domain containing protein (stm4435) from salmonella typhimurium lt2 with unknown ligand
To be Published
4H5A
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BU of 4h5a by Molmil
DNA octamer D (GTseGTACAC) partially crosslinked with platinum
分子名称: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3'), PLATINUM (II) ION
著者Zhang, W, Coronado, G, Huang, Z.
登録日2012-09-18
公開日2012-10-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献DNA octamer D (GTseGTACAC) partially crosslinked with platinum
To be Published
4HAE
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BU of 4hae by Molmil
Crystal structure of the CDYL2-chromodomain
分子名称: Chromodomain Y-like protein 2, SULFATE ION, UNKNOWN ATOM OR ION
著者Qin, S, Dombrovski, L, Tempel, W, Dong, A, Xu, C, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Wu, H, Structural Genomics Consortium (SGC)
登録日2012-09-26
公開日2012-10-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the CDYL2-chromodomain
To be Published
3SOQ
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BU of 3soq by Molmil
The structure of the first YWTD beta propeller domain of LRP6 in complex with a DKK1 peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Dickkopf-related protein 1, ...
著者Wang, W, Bourhis, E, Zhang, Y, Rouge, L, Wu, Y, Franke, Y, Cochran, A.G.
登録日2011-06-30
公開日2011-09-21
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Wnt antagonists bind through a short peptide to the first beta-propeller domain of LRP5/6.
Structure, 19, 2011
3SQD
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BU of 3sqd by Molmil
Crystal structure of human PTIP BRCT5/6-gamma H2AX complex
分子名称: Histone H2A.x, PAX-interacting protein 1
著者Yan, W, Shao, Z.H.
登録日2011-07-05
公開日2011-11-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.153 Å)
主引用文献Crystal structure of human PTIP BRCT5/6-gamma H2AX
To be Published
4HCB
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BU of 4hcb by Molmil
The metal-free form of crystal structure of E.coli ExoI-ssDNA complex
分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, GLYCEROL, ...
著者Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W.
登録日2012-09-29
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structures of Escherichia coli exonuclease I in complex with the single strand DNA
To be published
3SV5
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BU of 3sv5 by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: iodide complex
分子名称: 1,2-ETHANEDIOL, FORMIC ACID, Green fluorescent protein, ...
著者Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
登録日2011-07-12
公開日2012-07-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation.
J.Neurosci., 33, 2013
4IH0
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BU of 4ih0 by Molmil
Crystal structure of kirola (Act d 11) from crystal soaked with serotonin
分子名称: CHLORIDE ION, Kirola, MAGNESIUM ION, ...
著者Chruszcz, M, Ciardiello, M.A, Giangrieco, I, Osinski, T, Minor, W.
登録日2012-12-18
公開日2013-09-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural and bioinformatic analysis of the kiwifruit allergen Act d 11, a member of the family of ripening-related proteins.
Mol.Immunol., 56, 2013

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