Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12479 件

8QQ0
DownloadVisualize
BU of 8qq0 by Molmil
SARS-CoV-2 S protein bound to neutralising antibody UZGENT_A3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Remaut, H, Reiter, D, Vandenkerckhove, L, Acar, D.D, Witkowski, W, Gerlo, S.
登録日2023-10-03
公開日2024-01-31
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Integrating artificial intelligence-based epitope prediction in a SARS-CoV-2 antibody discovery pipeline: caution is warranted.
Ebiomedicine, 100, 2024
8SFY
DownloadVisualize
BU of 8sfy by Molmil
Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with UDP-glucose
分子名称: UDP-glycosyltransferase 202A2, URIDINE-5'-DIPHOSPHATE-GLUCOSE
著者Arriaza, R.H, Daneshian, L, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
登録日2023-04-11
公開日2023-09-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with UDP-glucose
To Be Published
8SFU
DownloadVisualize
BU of 8sfu by Molmil
Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin
分子名称: (2S)-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-1-benzopyran-7-yl 2-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside, UDP-glycosyltransferase 202A2, URIDINE-5'-DIPHOSPHATE
著者Arriaza, R.H, Dermauw, W, Wybouw, N, Van Leeuwen, T, Chruszcz, M.
登録日2023-04-11
公開日2023-09-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin
To Be Published
8SAI
DownloadVisualize
BU of 8sai by Molmil
Cryo-EM structure of GPR34-Gi complex
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
著者Yong, X.H, Zhao, C, Yan, W, Shao, Z.H.
登録日2023-04-01
公開日2023-10-04
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献Cryo-EM structures of human GPR34 enable the identification of selective antagonists.
Proc.Natl.Acad.Sci.USA, 120, 2023
5E5G
DownloadVisualize
BU of 5e5g by Molmil
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase with D-tryptophan bound in the tryptophan and phenylalanine binding sites
分子名称: 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, D-TRYPTOPHAN, MANGANESE (II) ION, ...
著者Reichau, S, Jiao, W, Parker, E.J.
登録日2015-10-08
公開日2016-06-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Probing the Sophisticated Synergistic Allosteric Regulation of Aromatic Amino Acid Biosynthesis in Mycobacterium tuberculosis Using -Amino Acids.
Plos One, 11, 2016
4PIO
DownloadVisualize
BU of 4pio by Molmil
Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N-dimethylhistidine and SAH
分子名称: CHLORIDE ION, Histidine-specific methyltransferase EgtD, MAGNESIUM ION, ...
著者Vit, A, Seebeck, F.P, Blankenfeldt, W.
登録日2014-05-09
公開日2014-12-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.506 Å)
主引用文献Ergothioneine Biosynthetic Methyltransferase EgtD Reveals the Structural Basis of Aromatic Amino Acid Betaine Biosynthesis.
Chembiochem, 16, 2015
3MW1
DownloadVisualize
BU of 3mw1 by Molmil
p38 kinase Crystal structure in complex with small molecule inhibitor
分子名称: 8-(2,6-dichlorophenyl)-4-(2,4-difluorophenyl)-2-piperidin-4-yl-1,7-naphthyridine 7-oxide, Mitogen-activated protein kinase 14
著者Segarra, V, Caturla, F, Lumeras, W, Roca, R, Fisher, M, Lamers, M.
登録日2010-05-05
公開日2011-04-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献1,7-Naphthyridine 1-Oxides as Novel Potent and Selective Inhibitors of p38 Mitogen Activated Protein Kinase
J.Med.Chem., 54, 2011
1RS7
DownloadVisualize
BU of 1rs7 by Molmil
Rat neuronal NOS heme domain with D-phenylalanine-D-nitroarginine amide bound
分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, D-MANNITOL, ...
著者Flinspach, M, Li, H, Jamal, J, Yang, W, Huang, H, Silverman, R.B, Poulos, T.L.
登録日2003-12-09
公開日2004-05-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structures of the Neuronal and Endothelial Nitric Oxide Synthase Heme Domain with d-Nitroarginine-Containing Dipeptide Inhibitors Bound.
Biochemistry, 43, 2004
5DLM
DownloadVisualize
BU of 5dlm by Molmil
Complex of Influenza M2e and Antibody
分子名称: Heavy chain of monoclonal antibody, Light chain of monoclonal antibody, Matrix protein 2, ...
著者Cho, K.J, Schepens, B, Moonens, K, Deng, L, Fiers, W, Remaut, H, Saelens, X.
登録日2015-09-07
公開日2015-10-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of the Conserved Amino Terminus of the Extracellular Domain of Matrix Protein 2 of Influenza A Virus Gripped by an Antibody.
J.Virol., 90, 2015
1RVD
DownloadVisualize
BU of 1rvd by Molmil
H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA,GAMMA-IMIDO-GTP
分子名称: 3-AMINOBENZOPHENONE-4-YL-AMINOHYDROXYPHOSPHINYLAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, TRANSFORMING PROTEIN P21/H-RAS-1
著者Ahmadian, M.R, Zor, T, Vogt, D, Kabsch, W, Selinger, Z, Wittinghofer, A, Scheffzek, K.
登録日1999-05-03
公開日1999-05-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Guanosine triphosphatase stimulation of oncogenic Ras mutants.
Proc.Natl.Acad.Sci.USA, 96, 1999
3MYG
DownloadVisualize
BU of 3myg by Molmil
Aurora A Kinase complexed with SCH 1473759
分子名称: 2-{ethyl[(5-{[6-methyl-3-(1H-pyrazol-4-yl)imidazo[1,2-a]pyrazin-8-yl]amino}isothiazol-3-yl)methyl]amino}-2-methylpropan-1-ol, Serine/threonine-protein kinase 6, TETRAETHYLENE GLYCOL
著者Hruza, A, Prosis, W, Ramanathan, L.
登録日2010-05-10
公開日2010-07-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of a Potent, Injectable Inhibitor of Aurora Kinases Based on the Imidazo-[1,2-a]-Pyrazine Core.
ACS Med Chem Lett, 1, 2010
8SO0
DownloadVisualize
BU of 8so0 by Molmil
Cryo-EM structure of the PP2A:B55-FAM122A complex
分子名称: FE (III) ION, PPP2R1A-PPP2R2A-interacting phosphatase regulator 1, Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform, ...
著者Fuller, J.R, Padi, S.K.R, Peti, W, Page, R.
登録日2023-04-28
公開日2023-10-25
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (2.79961 Å)
主引用文献Cryo-EM structures of PP2A:B55-FAM122A and PP2A:B55-ARPP19.
Nature, 625, 2024
5H0S
DownloadVisualize
BU of 5h0s by Molmil
EM Structure of VP1A and VP1B
分子名称: VP1
著者Li, X, Zhou, N, Xu, B, Chen, W, Zhu, B, Wang, X, Wang, J, Liu, H, Cheng, L.
登録日2016-10-06
公開日2017-01-25
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Near-Atomic Resolution Structure Determination of a Cypovirus Capsid and Polymerase Complex Using Cryo-EM at 200kV
J. Mol. Biol., 429, 2017
4PDO
DownloadVisualize
BU of 4pdo by Molmil
Structure of Ephrin type-A receptor 2
分子名称: Ephrin type-A receptor 2
著者Jimin, Z, Qiang, W, Zongchao, J.
登録日2014-04-19
公開日2014-05-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献Structure of Ephrin type-A receptor 2
To Be Published
5GLI
DownloadVisualize
BU of 5gli by Molmil
Human endothelin receptor type-B in the ligand-free form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Endothelin Receptor Subtype-B, OLEIC ACID, ...
著者Shihoya, W, Nishizawa, T, Okuta, A, Tani, K, Fujiyoshi, Y, Dohmae, N, Nureki, O, Doi, T.
登録日2016-07-11
公開日2016-09-07
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Activation mechanism of endothelin ETB receptor by endothelin-1.
Nature, 537, 2016
5GJC
DownloadVisualize
BU of 5gjc by Molmil
Zika virus NS3 helicase in complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, NS3 helicase
著者Tian, H.L, Ji, X.Y, Yang, X.Y, Zhang, Z.X, Lu, Z.K, Yang, K.L, Chen, C, Zhao, Q, Chi, H, Mu, Z.Y, Xie, W, Wang, Z.F, Lou, H.Q, Yang, H.T, Rao, Z.H.
登録日2016-06-28
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Structural basis of Zika virus helicase in recognizing its substrates
Protein Cell, 7, 2016
5GOU
DownloadVisualize
BU of 5gou by Molmil
Structure of a 16-mer protein nanocage fabricated from its 24-mer analogue by subunit interface redesign
分子名称: Ferritin heavy chain
著者Zhang, S, Zang, J, Wang, W, Wang, H, Zhao, G.
登録日2016-07-29
公開日2017-02-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Conversion of the Native 24-mer Ferritin Nanocage into Its Non-Native 16-mer Analogue by Insertion of Extra Amino Acid Residues.
Angew. Chem. Int. Ed. Engl., 55, 2016
3MXZ
DownloadVisualize
BU of 3mxz by Molmil
Crystal Structure of tubulin folding cofactor A from Arabidopsis thaliana
分子名称: NITRATE ION, Tubulin-specific chaperone A
著者Lu, L, Nan, J, Mi, W, Su, X.D, Li, Y.
登録日2010-05-08
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Crystal structure of tubulin folding cofactor A from Arabidopsis thaliana and its beta-tubulin binding characterization
Febs Lett., 584, 2010
5GTT
DownloadVisualize
BU of 5gtt by Molmil
Crystal structure of C. perfringens iota-like enterotoxin CPILE-a
分子名称: 1,2-ETHANEDIOL, Binary enterotoxin of Clostridium perfringens component a
著者Toniti, W, Yoshida, T, Tsurumura, T, Irikura, D, Tsuge, H.
登録日2016-08-23
公開日2017-03-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.011 Å)
主引用文献Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
PLoS ONE, 12, 2017
8R7M
DownloadVisualize
BU of 8r7m by Molmil
CTX-M14 in complex with boric acid and 1,2-diol boric ester
分子名称: BORIC ACID, Beta-lactamase, GLYCEROL, ...
著者Werner, N, Prester, A, Hinrichs, W, Perbandt, M, Betzel, C.
登録日2023-11-26
公開日2024-01-17
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the Beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification
To Be Published
5GX8
DownloadVisualize
BU of 5gx8 by Molmil
Crystal structure of solute-binding protein related to glycosaminoglycans
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.778 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5H0R
DownloadVisualize
BU of 5h0r by Molmil
RNA dependent RNA polymerase ,vp4,dsRNA
分子名称: RNA (42-MER), RNA-dependent RNA polymerase, VP4 protein
著者Li, X, Zhou, N, Chen, W, Zhu, B, Wang, X, Xu, B, Wang, J, Liu, H, Cheng, L.
登録日2016-10-06
公開日2017-01-25
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Near-Atomic Resolution Structure Determination of a Cypovirus Capsid and Polymerase Complex Using Cryo-EM at 200kV
J. Mol. Biol., 429, 2017
5GXT
DownloadVisualize
BU of 5gxt by Molmil
Crystal structure of PigG
分子名称: MAGNESIUM ION, Maltose-binding periplasmic protein,PigG
著者Zhang, F, Ran, T, Xu, D, Wang, W.
登録日2016-09-20
公開日2017-07-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.245 Å)
主引用文献Crystal structure of MBP-PigG fusion protein and the essential function of PigG in the prodigiosin biosynthetic pathway in Serratia marcescens FS14.
Int. J. Biol. Macromol., 99, 2017
5H5E
DownloadVisualize
BU of 5h5e by Molmil
The crystal structure of the yeast arginine methyltransferase SFM1 complexed with SAH
分子名称: Protein arginine N-methyltransferase SFM1, S-ADENOSYL-L-HOMOCYSTEINE
著者Xie, W, Wang, C, Zeng, J.
登録日2016-11-05
公開日2017-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献A flexible cofactor-binding loop in the novel arginine methyltransferase Sfm1.
FEBS Lett., 591, 2017
7FIV
DownloadVisualize
BU of 7fiv by Molmil
Crystal structure of the complex formed by Wolbachia cytoplasmic incompatibility factors CidA and CidBND1-ND2 from wPip(Tunis)
分子名称: CidA_I gamma/2 protein, CidB_I b/2 protein
著者Xiao, Y.J, Wang, W, Chen, X, Ji, X.Y, Yang, H.T.
登録日2021-08-01
公開日2022-04-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Crystal Structures of Wolbachia CidA and CidB Reveal Determinants of Bacteria-induced Cytoplasmic Incompatibility and Rescue.
Nat Commun, 13, 2022

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon