Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12479 results

2LGL
DownloadVisualize
BU of 2lgl by Molmil
NMR structure of the UHRF1 PHD domain
Descriptor: E3 ubiquitin-protein ligase UHRF1, ZINC ION
Authors:Wang, C, Shen, J, Yang, Z, Chen, P, Zhao, B, Hu, W, Lan, W, Tong, X, Wu, H, Li, G, Cao, C.
Deposit date:2011-07-28
Release date:2011-09-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for site-specific reading of unmodified R2 of histone H3 tail by UHRF1 PHD finger.
Cell Res., 21, 2011
5ZRX
DownloadVisualize
BU of 5zrx by Molmil
Crystal Structure of EphA2/SHIP2 Complex
Descriptor: Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2,Ephrin type-A receptor 2
Authors:Wang, Y, Shang, Y, Li, J, Chen, W, Li, G, Wan, J, Liu, W, Zhang, M.
Deposit date:2018-04-25
Release date:2018-05-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Specific Eph receptor-cytoplasmic effector signaling mediated by SAM-SAM domain interactions.
Elife, 7, 2018
5KZ5
DownloadVisualize
BU of 5kz5 by Molmil
Architecture of the Human Mitochondrial Iron-Sulfur Cluster Assembly Machinery: the Complex Formed by the Iron Donor, the Sulfur Donor, and the Scaffold
Descriptor: Cysteine desulfurase, mitochondrial, Frataxin, ...
Authors:Gakh, O, Ranatunga, W, Smith, D.Y, Ahlgren, E.C, Al-Karadaghi, S, Thompson, J.R, Isaya, G.
Deposit date:2016-07-22
Release date:2016-08-31
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (14.3 Å)
Cite:Architecture of the Human Mitochondrial Iron-Sulfur Cluster Assembly Machinery.
J.Biol.Chem., 291, 2016
5ZTE
DownloadVisualize
BU of 5zte by Molmil
Crystal structure of PrxA C119S mutant from Arabidopsis thaliana
Descriptor: 2-Cys peroxiredoxin BAS1, chloroplastic
Authors:Yang, Y, Cai, W, Wang, J, Pan, W, Liu, L, Wang, M, Zhang, M.
Deposit date:2018-05-03
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Arabidopsis thaliana peroxiredoxin A C119S mutant.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZRY
DownloadVisualize
BU of 5zry by Molmil
Crystal Structure of EphA6/Odin Complex
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Ankyrin repeat and SAM domain-containing protein 1A,Ephrin type-A receptor 6, ...
Authors:Wang, Y, Shang, Y, Li, J, Chen, W, Li, G, Wan, J, Liu, W, Zhang, M.
Deposit date:2018-04-25
Release date:2018-05-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Specific Eph receptor-cytoplasmic effector signaling mediated by SAM-SAM domain interactions.
Elife, 7, 2018
5L93
DownloadVisualize
BU of 5l93 by Molmil
An atomic model of HIV-1 CA-SP1 reveals structures regulating assembly and maturation
Descriptor: Capsid protein p24
Authors:Schur, F.K.M, Obr, M, Hagen, W.J.H, Wan, W, Arjen, J.J, Kirkpatrick, J.M, Sachse, C, Kraeusslich, H.-G, Briggs, J.A.G.
Deposit date:2016-06-09
Release date:2016-07-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.
Science, 353, 2016
4PTI
DownloadVisualize
BU of 4pti by Molmil
THE GEOMETRY OF THE REACTIVE SITE AND OF THE PEPTIDE GROUPS IN TRYPSIN, TRYPSINOGEN AND ITS COMPLEXES WITH INHIBITORS
Descriptor: TRYPSIN INHIBITOR
Authors:Huber, R, Kukla, D, Ruehlmann, A, Epp, O, Formanek, H, Deisenhofer, J, Steigemann, W.
Deposit date:1982-09-27
Release date:1983-01-18
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Geometry of the Reactive Site and of the Peptide Groups in Trypsin, Trypsinogen and its Complexes with Inhibitors
Acta Crystallogr.,Sect.B, 39, 1983
5KYW
DownloadVisualize
BU of 5kyw by Molmil
crystal structure of Sec23 and TANGO1 peptide3 complex
Descriptor: Protein transport protein Sec23A, Protein transport protein Sec24D, TANGO1 peptide3, ...
Authors:Ma, W, Goldberg, J.
Deposit date:2016-07-22
Release date:2016-09-07
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:TANGO1/cTAGE5 receptor as a polyvalent template for assembly of large COPII coats.
Proc.Natl.Acad.Sci.USA, 113, 2016
5L2U
DownloadVisualize
BU of 5l2u by Molmil
Oligomer crystal structure of CC chemokine 5 (CCL5)
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, C-C motif chemokine 5, CHLORIDE ION, ...
Authors:Liang, W, Wang, A, Tang, W.-J.
Deposit date:2016-08-02
Release date:2017-08-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:High resolution oligomer crystal structure of CC chemokine 5 (CCL5)
To Be Published
5KYU
DownloadVisualize
BU of 5kyu by Molmil
crystal structure of Sec23 and TANGO1 peptide2 complex
Descriptor: Protein transport protein Sec23A, Protein transport protein Sec24D, TANGO1 peptide2, ...
Authors:Ma, W, Goldberg, J.
Deposit date:2016-07-22
Release date:2016-09-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.512 Å)
Cite:TANGO1/cTAGE5 receptor as a polyvalent template for assembly of large COPII coats.
Proc.Natl.Acad.Sci.USA, 113, 2016
5KZQ
DownloadVisualize
BU of 5kzq by Molmil
Metabotropic Glutamate Receptor in complex with antagonist (1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-azanyl-3-[[3,4-bis(fluoranyl)phenyl]sulfanylmethyl]-4-oxidanyl-bicyclo[3.1.0]hexane-2,6-dicarboxylic acid
Descriptor: (1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-azanyl-3-[[3,4-bis(fluoranyl)phenyl]sulfanylmethyl]-4-oxidanyl-bicyclo[3.1.0]hexane-2,6-dicarboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 2
Authors:Chappell, M.D, Li, R, Smith, S.C, Dressman, B.A, Tromiczak, E.G, Tripp, A.E, Blanco, M.-J, Vetman, T, Quimby, S.J, Matt, J, Britton, T, Fivush, A.M, Schkeryantz, J.M, Mayhugh, D, Erickson, J.A, Bures, M, Jaramillo, C, Carpintero, M, de Diego, J.E, Barberis, M, Garcia-Cerrada, S, Soriano, J.F, Antonysamy, S, Atwell, S, MacEwan, I, Condon, B, Bradley, C, Wang, J, Zhang, A, Conners, K, Groshong, C, Wasserman, S.R, Koss, J.W, Witkin, J.M, Li, X, Overshiner, C, Wafford, K.A, Seidel, W, Wang, X.-S, Heinz, B.A, Swanson, S, Catlow, J, Bedwell, D, Monn, J.A, Mitch, C.H, Ornstein, P.
Deposit date:2016-07-25
Release date:2016-12-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Discovery of (1S,2R,3S,4S,5R,6R)-2-Amino-3-[(3,4-difluorophenyl)sulfanylmethyl]-4-hydroxy-bicyclo[3.1.0]hexane-2,6-dicarboxylic Acid Hydrochloride (LY3020371HCl): A Potent, Metabotropic Glutamate 2/3 Receptor Antagonist with Antidepressant-Like Activity.
J. Med. Chem., 59, 2016
3EQY
DownloadVisualize
BU of 3eqy by Molmil
Crystal structure of human MDMX in complex with a 12-mer peptide inhibitor
Descriptor: 12-mer peptide inhibitor, GUANIDINE, Mdm4 protein, ...
Authors:Pazgier, M, Lu, W.
Deposit date:2008-10-01
Release date:2009-03-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis for high-affinity peptide inhibition of p53 interactions with MDM2 and MDMX.
Proc.Natl.Acad.Sci.USA, 106, 2009
5L36
DownloadVisualize
BU of 5l36 by Molmil
Crystal Structure of a human FasL mutant in complex with human DcR3
Descriptor: SODIUM ION, Tumor necrosis factor ligand superfamily member 6, Tumor necrosis factor receptor superfamily member 6B
Authors:Liu, W, Bonanno, J.B, Almo, S.C.
Deposit date:2016-08-03
Release date:2016-09-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of the Complex of Human FasL and Its Decoy Receptor DcR3.
Structure, 24, 2016
5ZRZ
DownloadVisualize
BU of 5zrz by Molmil
Crystal Structure of EphA5/SAMD5 Complex
Descriptor: Ephrin type-A receptor 5, Sterile alpha motif domain-containing protein 5
Authors:Wang, Y, Shang, Y, Li, J, Chen, W, Li, G, Wan, J, Liu, W, Zhang, M.
Deposit date:2018-04-25
Release date:2018-05-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Specific Eph receptor-cytoplasmic effector signaling mediated by SAM-SAM domain interactions.
Elife, 7, 2018
1B82
DownloadVisualize
BU of 1b82 by Molmil
PRISTINE RECOMB. LIGNIN PEROXIDASE H8
Descriptor: CALCIUM ION, PROTEIN (LIGNIN PEROXIDASE), PROTOPORPHYRIN IX CONTAINING FE
Authors:Blodig, W, Doyle, W.A, Smith, A.T, Piontek, K.
Deposit date:1999-02-04
Release date:1999-02-16
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of pristine and oxidatively processed lignin peroxidase expressed in Escherichia coli and of the W171F variant that eliminates the redox active tryptophan 171. Implications for the reaction mechanism.
J.Mol.Biol., 305, 2001
5L9X
DownloadVisualize
BU of 5l9x by Molmil
Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 60s
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Gao, Y, Yang, W.
Deposit date:2016-06-12
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Capture of a third Mg2+ is essential for catalyzing DNA synthesis.
Science, 352, 2016
5LAO
DownloadVisualize
BU of 5lao by Molmil
S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Maslennikov, I, Kwiatkowski, W, Choe, S, Lipton, S.A, Guntert, P, Riek, R.
Deposit date:2016-06-14
Release date:2016-08-17
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
5LAM
DownloadVisualize
BU of 5lam by Molmil
Refined 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Maslennikov, I, Kwiatkowski, W, Choe, S, Lipton, S.A, Guntert, P, Riek, R.
Deposit date:2016-06-14
Release date:2016-08-17
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
1EXY
DownloadVisualize
BU of 1exy by Molmil
SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET
Descriptor: HTLV-1 REX PEPTIDE, RNA APTAMER, 33-MER
Authors:Jiang, F, Gorin, A, Hu, W, Majumdar, A, Baskerville, S, Xu, W, Ellington, A, Patel, D.J.
Deposit date:2000-05-05
Release date:2000-05-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples.
Structure Fold.Des., 7, 1999
3EX9
DownloadVisualize
BU of 3ex9 by Molmil
Crystal structure of PhzA/B from Burkholderia cepacia R18194 crystallized in C2221
Descriptor: Phenazine biosynthesis protein A/B
Authors:Ahuja, E.G, Blankenfeldt, W.
Deposit date:2008-10-16
Release date:2008-12-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:PhzA/B Catalyzes the Formation of the Tricycle in Phenazine Biosynthesis.
J.Am.Chem.Soc., 130, 2008
1EU8
DownloadVisualize
BU of 1eu8 by Molmil
STRUCTURE OF TREHALOSE MALTOSE BINDING PROTEIN FROM THERMOCOCCUS LITORALIS
Descriptor: CHLORIDE ION, PLATINUM (II) ION, TREHALOSE/MALTOSE BINDING PROTEIN, ...
Authors:Diez, J, Diederichs, K, Greller, G, Horlacher, R, Boos, W, Welte, W.
Deposit date:2000-04-14
Release date:2001-03-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of a liganded trehalose/maltose-binding protein from the hyperthermophilic Archaeon Thermococcus litoralis at 1.85 A.
J.Mol.Biol., 305, 2001
2RHE
DownloadVisualize
BU of 2rhe by Molmil
STRUCTURE OF A NOVEL BENCE-JONES PROTEIN (RHE) FRAGMENT AT 1.6 ANGSTROMS RESOLUTION
Descriptor: BENCE-JONES PROTEIN RHE (LIGHT CHAIN)
Authors:Fureyjunior, W, Wang, B.C, Yoo, C.S, Sax, M.
Deposit date:1983-06-13
Release date:1983-09-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a novel Bence-Jones protein (Rhe) fragment at 1.6 A resolution.
J.Mol.Biol., 167, 1983
4HJR
DownloadVisualize
BU of 4hjr by Molmil
Crystal structure of F2YRS
Descriptor: Tyrosine-tRNA ligase
Authors:Wang, J, Tian, C, Gong, W, Li, F, Shi, P, Li, J, Ding, W.
Deposit date:2012-10-13
Release date:2013-03-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A genetically encoded 19F NMR probe for tyrosine phosphorylation.
Angew.Chem.Int.Ed.Engl., 52, 2013
4Q5W
DownloadVisualize
BU of 4q5w by Molmil
Crystal structure of extended-Tudor 9 of Drosophila melanogaster
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Maternal protein tudor
Authors:Ren, R, Liu, H, Wang, W, Wang, M, Yang, N, Dong, Y, Gong, W, Lehmann, R, Xu, R.M.
Deposit date:2014-04-17
Release date:2014-05-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structure and domain organization of Drosophila Tudor
Cell Res., 24, 2014
4Q5Y
DownloadVisualize
BU of 4q5y by Molmil
Crystal structure of extended-Tudor 10-11 of Drosophila melanogaster
Descriptor: Maternal protein tudor
Authors:Liu, H, Ren, R, Wang, W, Wang, M, Yang, N, Dong, Y, Gong, W, Lehmann, R, Xu, R.M.
Deposit date:2014-04-18
Release date:2014-05-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and domain organization of Drosophila Tudor
Cell Res., 24, 2014

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon