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PDB: 34840 results

6PZS
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BU of 6pzs by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with JR005
Descriptor: 4-[({[(1R,2R,5R)-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}amino)methyl]-N-hydroxybenzamide, CHLORIDE ION, Hdac6 protein, ...
Authors:Osko, J.D, Christianson, D.W.
Deposit date:2019-08-01
Release date:2020-02-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Exploring Structural Determinants of Inhibitor Affinity and Selectivity in Complexes with Histone Deacetylase 6.
J.Med.Chem., 63, 2020
7AO8
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BU of 7ao8 by Molmil
Structure of the MTA1/HDAC1/MBD2 NURD deacetylase complex
Descriptor: Histone deacetylase 1, INOSITOL HEXAKISPHOSPHATE, Metastasis-associated protein MTA1, ...
Authors:Millard, C.J, Fairall, L, Ragan, T.J, Savva, C.G, Schwabe, J.W.R.
Deposit date:2020-10-14
Release date:2020-11-11
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:The topology of chromatin-binding domains in the NuRD deacetylase complex.
Nucleic Acids Res., 48, 2020
7AXI
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BU of 7axi by Molmil
Crystal structure of the hPXR-LBD in complex with estradiol and cis-chlordane
Descriptor: (+)cis-chlordane, (-)cis-chlordane, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Huet, T, Delfosse, V, Bourguet, W.
Deposit date:2020-11-09
Release date:2021-01-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures.
Proc.Natl.Acad.Sci.USA, 118, 2021
5H7E
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BU of 5h7e by Molmil
Crystal Structure of native drCPDase
Descriptor: GLYCEROL, RNA 2',3'-cyclic phosphodiesterase, SULFATE ION
Authors:Han, W, Hua, Y, Zhao, Y.
Deposit date:2016-11-18
Release date:2017-09-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the RNA 2',3'-cyclic phosphodiesterase from Deinococcus radiodurans
Acta Crystallogr F Struct Biol Commun, 73, 2017
7B3T
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BU of 7b3t by Molmil
Crystal structure of c-MET bound by compound 2
Descriptor: 3-(phenylmethyl)-1~{H}-pyrrolo[2,3-b]pyridine, CHLORIDE ION, Hepatocyte growth factor receptor, ...
Authors:Collie, G.W.
Deposit date:2020-12-01
Release date:2020-12-09
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural Basis for Targeting the Folded P-Loop Conformation of c-MET.
Acs Med.Chem.Lett., 12, 2021
7B41
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BU of 7b41 by Molmil
Crystal structure of c-MET bound by compound 7
Descriptor: 3-[(2-fluorophenyl)methyl]-5-(1-piperidin-4-ylpyrazol-4-yl)-1~{H}-pyrrolo[2,3-b]pyridine, Hepatocyte growth factor receptor
Authors:Collie, G.W.
Deposit date:2020-12-02
Release date:2020-12-09
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural Basis for Targeting the Folded P-Loop Conformation of c-MET.
Acs Med.Chem.Lett., 12, 2021
5HVS
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BU of 5hvs by Molmil
Crystal Structure of Macrophage Migration Inhibitory Factor (MIF) with a Biaryltriazole Inhibitor (3i-305)
Descriptor: 3-({2-[1-(3-fluoro-4-hydroxyphenyl)-1H-1,2,3-triazol-4-yl]quinolin-5-yl}oxy)benzoic acid, GLYCEROL, Macrophage migration inhibitory factor, ...
Authors:Robertson, M.J, Jorgensen, W.L.
Deposit date:2016-01-28
Release date:2016-06-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Fluorescence Polarization Assay for Binding to Macrophage Migration Inhibitory Factor and Crystal Structures for Complexes of Two Potent Inhibitors.
J.Am.Chem.Soc., 138, 2016
7ATU
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BU of 7atu by Molmil
The LIMK1 Kinase Domain Bound To LIJTF500025
Descriptor: (S)-2-benzyl-6-(8-chloro-5-methyl-4-oxo-2,3,4,5-tetrahydrobenzo[b][1,4]oxazepin-3-yl)-7-oxo-4,5,6,7-tetrahydro-2H-pyrazolo[3,4-c]pyridine-3-carboxamide, LIM domain kinase 1
Authors:Mathea, S, Chatterjee, D, Preuss, F, Yamamoto, S, Tawada, M, Nomura, I, Takagi, T, Ahmed, M, Little, W, Mueller-Knapp, S, Knapp, S.
Deposit date:2020-10-30
Release date:2020-12-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The LIMK1 Kinase Domain Bound To LIJTF500025
To Be Published
5HAW
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BU of 5haw by Molmil
structures of the NO factor SlmA bound to DNA and the cytoskeletal cell division protein FtsZ
Descriptor: DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*TP*CP*AP*C)-3'), FtsZ CTT, Nucleoid occlusion factor SlmA
Authors:Schumacher, M.A, Zeng, W.
Deposit date:2015-12-31
Release date:2016-04-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ.
Proc.Natl.Acad.Sci.USA, 113, 2016
7YLF
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BU of 7ylf by Molmil
Crystal structure of the chicken Toll-like receptor 15 TIR domain (2-mercaptoethanol adduct)
Descriptor: GLYCEROL, SULFATE ION, Toll-like receptor 15
Authors:Ko, K.Y, Song, W.S, Yoon, S.I.
Deposit date:2022-07-26
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of the Toll-like receptor 15 TIR domain.
Iucrj, 10, 2023
7AXA
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BU of 7axa by Molmil
Crystal structure of the hPXR-LBD in complex with clotrimazole
Descriptor: 1-[(2-CHLOROPHENYL)(DIPHENYL)METHYL]-1H-IMIDAZOLE, Nuclear receptor subfamily 1 group I member 2
Authors:Delfosse, V, Granell, M, Blanc, P, Bourguet, W.
Deposit date:2020-11-09
Release date:2021-01-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures.
Proc.Natl.Acad.Sci.USA, 118, 2021
5H6U
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BU of 5h6u by Molmil
Structure of alginate-binding protein AlgQ2 in complex with an alginate pentasaccharide
Descriptor: AlgQ2, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Uenishi, K, Kaneko, A, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2016-11-15
Release date:2017-08-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.006 Å)
Cite:A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate
J. Biol. Chem., 292, 2017
7AXF
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BU of 7axf by Molmil
Crystal structure of the hPXR-LBD in complex with pretilachlor
Descriptor: ISOPROPYL ALCOHOL, Nuclear receptor subfamily 1 group I member 2, pretilachlor
Authors:Harrus, D, Delfosse, V, Bourguet, W.
Deposit date:2020-11-09
Release date:2021-01-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures.
Proc.Natl.Acad.Sci.USA, 118, 2021
7YLG
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BU of 7ylg by Molmil
Crystal structure of the chicken Toll-like receptor 15 TIR domain (glutathione adduct)
Descriptor: GLUTATHIONE, Toll-like receptor 2
Authors:Ko, K.Y, Song, W.S, Yoon, S.I.
Deposit date:2022-07-26
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of the Toll-like receptor 15 TIR domain.
Iucrj, 10, 2023
5HDR
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BU of 5hdr by Molmil
Crystal structure of a bacterial fucosidase with iminocyclitol (2S,3S,4R,5S)-3,4-dihydroxy-2-ethynyl-5-methylpyrrolidine
Descriptor: Alpha-L-fucosidase, IMIDAZOLE, SULFATE ION, ...
Authors:Wright, D.W, Davies, G.J.
Deposit date:2016-01-05
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a bacterial fucosidase with iminocyclitol (2S,3S,4R,5S)-3,4-dihydroxy-2-ethynyl-5-methylpyrrolidine
To Be Published
7AJR
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BU of 7ajr by Molmil
Virtual screening approach leading to the identification of a novel and tractable series of Pseudomonas aeruginosa elastase inhibitors
Descriptor: 2-[2-(1,3-benzothiazol-2-ylmethylcarbamoyl)-1,3-dihydroinden-2-yl]ethanoic acid, Keratinase KP2, SULFATE ION, ...
Authors:Leiris, S, Davies, D.T, Sprinsky, N, Castandet, J, Behria, L, Bodnarchuk, M.S, Sutton, J.M, Mullins, T.M.G, Jones, M.W, Forrest, A.K, Pallin, T.D, Karunakar, P, Martha, S.K, Parusharamulu, B, Ramula, R, Kotha, V, Pottabathini, N, Pothukanuri, S, Lemonnier, M, Everett, M.
Deposit date:2020-09-29
Release date:2021-02-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Virtual Screening Approach to Identifying a Novel and Tractable Series of Pseudomonas aeruginosa Elastase Inhibitors.
Acs Med.Chem.Lett., 12, 2021
6Q04
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BU of 6q04 by Molmil
MERS-CoV S structure in complex with 5-N-acetyl neuraminic acid
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FOLIC ACID, ...
Authors:Park, Y.J, Walls, A.C, Wang, Z, Sauer, M, Li, W, Tortorici, M.A, Bosch, B.J, DiMaio, F.D, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-08-01
Release date:2019-12-11
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structures of MERS-CoV spike glycoprotein in complex with sialoside attachment receptors.
Nat.Struct.Mol.Biol., 26, 2019
7YNJ
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BU of 7ynj by Molmil
Structure of human SGLT2-MAP17 complex bound with substrate AMG in the occluded conformation
Descriptor: PDZK1-interacting protein 1, Sodium/glucose cotransporter 2, methyl alpha-D-glucopyranoside
Authors:Chen, L, Niu, Y, Cui, W.
Deposit date:2022-07-31
Release date:2023-05-31
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Structures of human SGLT in the occluded state reveal conformational changes during sugar transport.
Nat Commun, 14, 2023
7YNI
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BU of 7yni by Molmil
Structure of human SGLT1-MAP17 complex bound with substrate 4D4FDG in the occluded conformation
Descriptor: (2R,3R,4R,5S,6R)-5-fluoranyl-6-(hydroxymethyl)oxane-2,3,4-triol, PDZK1-interacting protein 1, Sodium/glucose cotransporter 1
Authors:Chen, L, Niu, Y, Cui, W.
Deposit date:2022-07-31
Release date:2023-05-31
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structures of human SGLT in the occluded state reveal conformational changes during sugar transport.
Nat Commun, 14, 2023
6PYE
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BU of 6pye by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with NR160
Descriptor: 1,2-ETHANEDIOL, Hdac6 protein, N-[(1-benzyl-1H-tetrazol-5-yl)methyl]-N-{[4-(hydroxycarbamoyl)phenyl]methyl}-2-(trifluoromethyl)benzamide, ...
Authors:Osko, J.D, Christianson, D.W.
Deposit date:2019-07-29
Release date:2020-07-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.480003 Å)
Cite:Multicomponent Synthesis, Binding Mode, and Structure-Activity Relationship of Selective Histone Deacetylase 6 (HDAC6) Inhibitors with Bifurcated Capping Groups.
J.Med.Chem., 63, 2020
5HEK
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BU of 5hek by Molmil
crystal structure of M1.HpyAVI
Descriptor: Adenine specific DNA methyltransferase (DpnA)
Authors:Ma, B, Zhang, H, Liu, W.
Deposit date:2016-01-06
Release date:2016-11-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Biochemical and structural characterization of a DNA N6-adenine methyltransferase from Helicobacter pylori
Oncotarget, 7, 2016
6Q0Z
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BU of 6q0z by Molmil
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with JS28
Descriptor: 2-(4-bromophenyl)-N-hydroxy-1,3-oxazole-4-carboxamide, Hdac6 protein, POTASSIUM ION, ...
Authors:Osko, J.D, Christianson, D.W.
Deposit date:2019-08-02
Release date:2020-02-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Exploring Structural Determinants of Inhibitor Affinity and Selectivity in Complexes with Histone Deacetylase 6.
J.Med.Chem., 63, 2020
7YTF
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BU of 7ytf by Molmil
Structure of OCPx2 from Nostoc flagelliforme CCNUN1
Descriptor: Ketosteroid isomerase-related protein, beta,beta-carotene-4,4'-dione
Authors:Yang, Y.W, Chen, S.Z, Liu, K, Chen, M, Qiu, B.S.
Deposit date:2022-08-14
Release date:2023-06-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Functional specialization of expanded orange carotenoid protein paralogs in subaerial Nostoc species.
Plant Physiol., 192, 2023
5HJK
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BU of 5hjk by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a complexed with SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
7YKP
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BU of 7ykp by Molmil
Crystal structure of a novel alpha/beta hydrolase from thermomonospora curvata with glycerol
Descriptor: GLYCEROL, Triacylglycerol lipase
Authors:Han, X, Jian, G, Bornscheuer, U.T, Wei, R, Liu, W.
Deposit date:2022-07-23
Release date:2023-07-26
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystal structure of a novel alpha/beta hydrolase from thermomonospora curvata with glycerol
To Be Published

226262

數據於2024-10-16公開中

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