Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 372 results

4ZR6
DownloadVisualize
BU of 4zr6 by Molmil
Lymnaea Stagnalis Acetylcholine Binding Protein in Complex with 3-[(4E)-4-[(3-methylimidazol-4-yl)methylene]-2,3-dihydropyrrol-5-yl]pyridine
Descriptor: 3-{(4E)-4-[(1-methyl-1H-imidazol-5-yl)methylidene]-3,4-dihydro-2H-pyrrol-5-yl}pyridine, Acetylcholine-binding protein
Authors:Bobango, J, Bryant, D, Denton, T.T, Talley, T.T.
Deposit date:2015-05-11
Release date:2016-05-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-guided design and analysis of arylidene anabaseines and myosmines
To be Published
1HA9
DownloadVisualize
BU of 1ha9 by Molmil
SOLUTION STRUCTURE OF THE SQUASH TRYPSIN INHIBITOR MCoTI-II, NMR, 30 STRUCTURES.
Descriptor: TRYPSIN INHIBITOR II
Authors:Heitz, A, Hernandez, J.-F, Gagnon, J, Hong, T.T, Pham, T.T.C, Nguyen, T.M, Le-Nguyen, D, Chiche, L.
Deposit date:2001-04-02
Release date:2001-04-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution Structure of the Squash Trypsin Inhibitor Mcoti-II. A New Family for Cyclic Knottins
Biochemistry, 40, 2001
4NTZ
DownloadVisualize
BU of 4ntz by Molmil
Crystal structure of Adenylate kinase from Streptococcus pneumoniae
Descriptor: Adenylate kinase, SULFATE ION
Authors:Thach, T.T, Luong, T.T, Lee, S.H, Rhee, D.K.
Deposit date:2013-12-03
Release date:2014-07-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Adenylate kinase from Streptococcus pneumoniae is essential for growth through its catalytic activity
FEBS Open Bio, 4, 2014
4NU0
DownloadVisualize
BU of 4nu0 by Molmil
Crystal structure of Adenylate kinase from Streptococcus pneumoniae with Ap5A
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION
Authors:Thach, T.T, Luong, T.T, Lee, S.H, Rhee, D.K.
Deposit date:2013-12-03
Release date:2014-07-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.485 Å)
Cite:Adenylate kinase from Streptococcus pneumoniae is essential for growth through its catalytic activity
FEBS Open Bio, 4, 2014
4V2T
DownloadVisualize
BU of 4v2t by Molmil
Membrane embedded pleurotolysin pore with 13 fold symmetry
Descriptor: PLEUROTOLYSIN A, PLEUROTOLYSIN B
Authors:Lukoyanova, N, Kondos, S.C, Farabella, I, Law, R.H.P, Reboul, C.F, Caradoc-Davies, T.T, Spicer, B.A, Kleifeld, O, Perugini, M, Ekkel, S, Hatfaludi, T, Oliver, K, Hotze, E.M, Tweten, R.K, Whisstock, J.C, Topf, M, Dunstone, M.A, Saibil, H.R.
Deposit date:2014-10-15
Release date:2015-02-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (11 Å)
Cite:Conformational Changes During Pore Formation by the Perforin-Related Protein Pleurotolysin.
Plos Biol., 13, 2015
4PM4
DownloadVisualize
BU of 4pm4 by Molmil
Structure of a putative periplasmic iron siderophore binding protein (Rv0265c) from Mycobacterium tuberculosis H37Rv
Descriptor: CHLORIDE ION, Iron complex transporter substrate-binding protein, SULFATE ION
Authors:Arbing, M.A, Chan, S, Tran, N, Kuo, E, Lu, J, Harris, L.R, Zhou, T.T, Eisenberg, D, TB Structural Genomics Consortium (TBSGC)
Deposit date:2014-05-20
Release date:2014-06-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a putative periplasmic iron siderophore binding protein (Rv0265c) from Mycobacterium tuberculosis H37Rv
To Be Published
4W5J
DownloadVisualize
BU of 4w5j by Molmil
New structural conformations of adenylate kinase from Streptococcus pneumoniae D39 with Ap5A
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION
Authors:Thach, T.T, Lee, S.H.
Deposit date:2014-08-18
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:New crystal structures of adenylate kinase from Streptococcus pneumoniae D39 in two conformations.
Acta Crystallogr.,Sect.F, 70, 2014
6L34
DownloadVisualize
BU of 6l34 by Molmil
Crystal structure of the HMG domain of human FACT complex subunit SSRP1
Descriptor: FACT complex subunit SSRP1
Authors:Li, H.Y, Hu, T.T, Dou, Y.S, Su, D.
Deposit date:2019-10-09
Release date:2020-10-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Crystal structure of the HMG domain of human FACT complex subunit SSRP1
To Be Published
4ZRU
DownloadVisualize
BU of 4zru by Molmil
X-ray crystal structure of Lymnaea stagnalis acetylcholine binding protein (Ls-AChBP) in complex with 3-[2-[(2S)-pyrrolidin-2-yl]ethynyl]pyridine (TI-5180)
Descriptor: 3-[(2S)-pyrrolidin-2-ylethynyl]pyridine, Acetylcholine-binding protein, PHOSPHATE ION
Authors:Bobango, J, Sankaran, B, Park, J.F, Wu, J, Talley, T.T.
Deposit date:2015-05-12
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Comparisons of Binding Affinities for Neuronal Nicotinic Receptors (NNRs) and AChBPs, and Structural Features of a High-Affinity, Non-selective NNR Ligand-AChBP Co-crystal Structure
To be Published
3LEU
DownloadVisualize
BU of 3leu by Molmil
HIGH RESOLUTION 1H NMR STUDY OF LEUCOCIN A IN DODECYLPHOSPHOCHOLINE MICELLES, 19 STRUCTURES (1:40 RATIO OF LEUCOCIN A:DPC) (0.1% TFA)
Descriptor: LEUCOCIN A
Authors:Gallagher, N.L.F, Sailer, M, Niemczura, W.P, Nakashima, T.T, Stiles, M.E, Vederas, J.C.
Deposit date:1997-05-20
Release date:1997-11-26
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Three-dimensional structure of leucocin A in trifluoroethanol and dodecylphosphocholine micelles: spatial location of residues critical for biological activity in type IIa bacteriocins from lactic acid bacteria.
Biochemistry, 36, 1997
6OG4
DownloadVisualize
BU of 6og4 by Molmil
plasminogen binding group A streptococcal M protein
Descriptor: Plasminogen, Plasminogen-binding group A streptococcal M-like protein PAM, SULFATE ION
Authors:Law, R.H.P, Quek, A.J, Whisstock, J.C, Caradoc-Davies, T.T.
Deposit date:2019-04-01
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Function Characterization of the a1a2 Motifs of Streptococcus pyogenes M Protein in Human Plasminogen Binding.
J.Mol.Biol., 431, 2019
7ZTA
DownloadVisualize
BU of 7zta by Molmil
Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Leroy, E.C, Perry, T.N, Renault, T.T, Innis, C.A.
Deposit date:2022-05-09
Release date:2023-04-12
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs.
Nat.Chem.Biol., 19, 2023
2G8X
DownloadVisualize
BU of 2g8x by Molmil
Escherichia coli Y209W apoprotein
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, CARBONATE ION, PHOSPHATE ION, ...
Authors:Lee, T.T, Finer-Moore, J.S, Stroud, R.M.
Deposit date:2006-03-03
Release date:2006-03-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:The role of protein dynamics in thymidylate synthase catalysis: Variants of conserved dUMP-binding Tyr-261
TO BE PUBLISHED
5X1R
DownloadVisualize
BU of 5x1r by Molmil
PpkA-294 apo form
Descriptor: PpkA-294
Authors:Li, P.P, Ran, T.T, Xu, D.Q, Wang, W.W.
Deposit date:2017-01-26
Release date:2018-01-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of the kinase domain of PpkA, a key regulatory component of T6SS, reveal a general inhibitory mechanism.
Biochem.J., 475, 2018
8IGI
DownloadVisualize
BU of 8igi by Molmil
Crystal structure of HP1526 (XthA)- a base excision DNA repair protein in Helicobacter pylori
Descriptor: 1,3-BUTANEDIOL, Exodeoxyribonuclease (LexA), MANGANESE (II) ION
Authors:Dinh, T.T, Dao, O, Lee, K.H.
Deposit date:2023-02-20
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of the apurinic/apyrimidinic endonuclease XthA (HP1526 protein) from Helicobacter pylori.
Biochem.Biophys.Res.Commun., 663, 2023
8A9L
DownloadVisualize
BU of 8a9l by Molmil
Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease and dementia with Lewy bodies
Descriptor: Alpha-synuclein, Unknown fragment
Authors:Yang, Y, Shi, Y, Schweighauser, M, Zhang, X.J, Kotecha, A, Murzin, A.G, Garringer, H.J, Cullinane, P, Saito, Y, Foroud, T, Warner, T.T, Hasegawa, K, Vidal, R, Murayama, S, Revesz, T, Ghetti, B, Hasegawa, M, Lashley, T, Scheres, H.W.S, Goedert, M.
Deposit date:2022-06-28
Release date:2022-08-31
Last modified:2022-11-09
Method:ELECTRON MICROSCOPY (2.16 Å)
Cite:Structures of alpha-synuclein filaments from human brains with Lewy pathology.
Nature, 610, 2022
7KPD
DownloadVisualize
BU of 7kpd by Molmil
NMR Solution Structure of Acyclotide ribe 31
Descriptor: Acyclotide ribe 31
Authors:Harvey, P.J, Craik, D.J, Dang, T.T.
Deposit date:2020-11-11
Release date:2021-02-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:In Planta Discovery and Chemical Synthesis of Bracelet Cystine Knot Peptides from Rinorea bengalensis .
J.Nat.Prod., 2021
8F5X
DownloadVisualize
BU of 8f5x by Molmil
Crystal structure of human eosinophil-derived neurotoxin (EDN, ribonuclease 2) in complex with 5'-adenosine monophosphate (AMP)
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, Non-secretory ribonuclease, ...
Authors:Tran, T.T.Q, Pham, N.T.H, Calmettes, C, Doucet, N.
Deposit date:2022-11-15
Release date:2023-11-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ancestral sequence reconstruction dissects structural and functional differences among eosinophil ribonucleases.
J.Biol.Chem., 300, 2024
1YI5
DownloadVisualize
BU of 1yi5 by Molmil
Crystal structure of the a-cobratoxin-AChBP complex
Descriptor: Acetylcholine-binding protein, Long neurotoxin 1
Authors:Bourne, Y, Talley, T.T, Hansen, S.B, Taylor, P, Marchot, P.
Deposit date:2005-01-11
Release date:2005-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Crystal structure of a Cbtx-AChBP complex reveals essential interactions between snake alpha-neurotoxins and nicotinic receptors
Embo J., 24, 2005
2PG2
DownloadVisualize
BU of 2pg2 by Molmil
Crystal structure of KSP in complex with ADP and thiophene containing inhibitor 15
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF11, MAGNESIUM ION, ...
Authors:Lee, T.T.
Deposit date:2007-04-06
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Synthesis and SAR of thiophene containing kinesin spindle protein (KSP) inhibitors
Bioorg.Med.Chem.Lett., 17, 2007
6DN5
DownloadVisualize
BU of 6dn5 by Molmil
SPRY domain-containing SOCS box protein 2 complexed with WDINNN(BAL) cyclic peptide inhibitor
Descriptor: SPRY domain-containing SOCS box protein 2, SULFATE ION, WDINNN(BAL) cyclic peptide inhibitor
Authors:Law, R.H.P, Caradoc-Davies, T.T, Norton, R.S.
Deposit date:2018-06-06
Release date:2019-04-17
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Cyclic Peptide Inhibitor of the iNOS-SPSB Protein-Protein Interaction as a Potential Anti-Infective Agent.
ACS Chem. Biol., 13, 2018
6DN8
DownloadVisualize
BU of 6dn8 by Molmil
SPRY domain-containing SOCS box protein 2 complexed with (GZJ)VDINNN(CY3) Cyclic peptide inhibitor
Descriptor: (GZJ)VDINNN(CY3) Cyclic peptide inhibitor, ACETATE ION, SPRY domain-containing SOCS box protein 4, ...
Authors:Law, R.H.P, Caradoc-Davies, T.T, Norton, R.S.
Deposit date:2018-06-06
Release date:2019-04-17
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Cyclic Peptide Inhibitor of the iNOS-SPSB Protein-Protein Interaction as a Potential Anti-Infective Agent.
ACS Chem. Biol., 13, 2018
1WBI
DownloadVisualize
BU of 1wbi by Molmil
AVR2
Descriptor: AVIDIN-RELATED PROTEIN 2, BIOTIN, GLYCEROL, ...
Authors:Airenne, T.T, Hytonen, V.P, Maatta, J.H, Kidron, H, Halling, K.K, Horha, J, Kulomaa, T, Nyholm, T.K.M, Johnson, M.S, Salminen, T.A, Kulomaa, M.S.
Deposit date:2004-11-01
Release date:2005-10-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Avidin Related Protein 2 Shows Unique Structural and Functional Features Among the Avidin Protein Family.
Bmc Biotechnol., 5, 2005
1WBE
DownloadVisualize
BU of 1wbe by Molmil
X-ray structure of bovine GLTP
Descriptor: DECANOIC ACID, GLYCEROL, GLYCOLIPID TRANSFER PROTEIN
Authors:Airenne, T.T, Kidron, H, West, G, Nymalm, Y, Nylund, M, Mattjus, P, Salminen, T.A.
Deposit date:2004-11-01
Release date:2005-11-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural Evidence for Adaptive Ligand Binding of Glycolipid Transfer Protein.
J.Mol.Biol., 355, 2006
5HNV
DownloadVisualize
BU of 5hnv by Molmil
Crystal structure of PpkA
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Li, P.P, Ran, T.T, Wang, W.W.
Deposit date:2016-01-19
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structures of the kinase domain of PpkA, a key regulatory component of T6SS, reveal a general inhibitory mechanism.
Biochem.J., 475, 2018

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon