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PDB: 1345 results

6NOC
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BU of 6noc by Molmil
Crystal structure of FBF-2 repeat 5 mutant (C363A, R364Y) in complex with 8-nt RNA
Descriptor: Fem-3 mRNA-binding factor 2, RNA (5'-R(*UP*GP*UP*AP*AP*AP*UP*A)-3')
Authors:McCann, K, Wang, Y, Qiu, C, Hall, T.M.T.
Deposit date:2019-01-16
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.849 Å)
Cite:Engineering a conserved RNA regulatory protein repurposes its biological function in vivo .
Elife, 8, 2019
6NDJ
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BU of 6ndj by Molmil
Crystal structure of human NLRP6 PYD domain with MBP fusion
Descriptor: Maltose/maltodextrin-binding periplasmic protein, NACHT, LRR and PYD domains-containing protein 6 chimera
Authors:Shen, C, Fu, T.M, Wu, H.
Deposit date:2018-12-13
Release date:2019-01-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Molecular mechanism for NLRP6 inflammasome assembly and activation.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3QC5
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BU of 3qc5 by Molmil
GspB
Descriptor: GLYCEROL, NITROGEN MOLECULE, POTASSIUM ION, ...
Authors:Pyburn, T.M, Iverson, T.M.
Deposit date:2011-01-15
Release date:2011-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Structural Model for Binding of the Serine-Rich Repeat Adhesin GspB to Host Carbohydrate Receptors.
Plos Pathog., 7, 2011
6NMW
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BU of 6nmw by Molmil
Crystal structure of the human Lyn SH3 domain
Descriptor: Tyrosine-protein kinase Lyn
Authors:Berndt, S, Gurevich, V.V, Iverson, T.M.
Deposit date:2019-01-12
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Crystal structure of the SH3 domain of human Lyn non-receptor tyrosine kinase.
PLoS ONE, 14, 2019
6NOH
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BU of 6noh by Molmil
Crystal structure of FBF-2 repeat 5 mutant (C363S, R364Y, Q367S) in complex with 8-nt RNA
Descriptor: 1,2-ETHANEDIOL, Fem-3 mRNA-binding factor 2, RNA (5'-R(*UP*GP*UP*AP*AP*AP*UP*A)-3')
Authors:McCann, K.L, Wang, Y, Qiu, C, Hall, T.M.T.
Deposit date:2019-01-16
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.249 Å)
Cite:Engineering a conserved RNA regulatory protein repurposes its biological function in vivo .
Elife, 8, 2019
4GYY
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BU of 4gyy by Molmil
Crystal structure of human O-GlcNAc Transferase with UDP-5SGlcNAc and a peptide substrate
Descriptor: (2S,3R,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-thiopyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate, Casein kinase II subunit alpha, SULFATE ION, ...
Authors:Lazarus, M.B, Jiang, J, Gloster, T.M, Zandberg, W.F, Vocadlo, D.J, Walker, S.
Deposit date:2012-09-05
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural snapshots of the reaction coordinate for O-GlcNAc transferase.
Nat.Chem.Biol., 8, 2012
6NCV
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BU of 6ncv by Molmil
Cryo-EM structure of NLRP6 PYD filament
Descriptor: NACHT, LRR and PYD domains-containing protein 6
Authors:Shen, C, Fu, T.M, Wu, H.
Deposit date:2018-12-12
Release date:2019-01-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular mechanism for NLRP6 inflammasome assembly and activation.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5T38
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BU of 5t38 by Molmil
Crystal Structure of the N-terminal domain of EvdMO1 with SAH bound
Descriptor: EvdMO1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:McCulloch, K.M, Berndt, S, Yamakawa, I, Chen, Q, Loukachevitch, L.V, Starbird, C, Perry, N.A, Iverson, T.M.
Deposit date:2016-08-25
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.1502 Å)
Cite:The Structure of the Bifunctional Everninomicin Biosynthetic Enzyme EvdMO1 Suggests Independent Activity of the Fused Methyltransferase-Oxidase Domains.
Biochemistry, 57, 2018
1DVW
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BU of 1dvw by Molmil
NMR structure of 18 residue peptide from merp protein
Descriptor: 18 RESIDUE PEPTIDE FROM MERP PROTEIN, MERCURY (II) ION
Authors:Veglia, G, Porcelli, F, De Silva, T.M, Prantner, A.M, Opella, S.J.
Deposit date:2000-01-22
Release date:2003-12-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The Structure of the Metal-Binding Motif GMTCAAC Is Similar in an 18-Residue Linear Peptide and the Mercury Binding Protein MerP
J.Am.Chem.Soc., 122, 2000
6MG0
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BU of 6mg0 by Molmil
Crystal structure of a 5-domain construct of LgrA in the thiolation state
Descriptor: 5'-({[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-{[oxido(oxo)phosphonio]oxy}butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentyl]sulfonyl}amino)-5'-deoxyadenosine, Linear gramicidin synthase subunit A
Authors:Reimer, J.M, Eivaskhani, M, Harb, I, Schmeing, T.M.
Deposit date:2018-09-12
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (6 Å)
Cite:Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
1DOK
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BU of 1dok by Molmil
MONOCYTE CHEMOATTRACTANT PROTEIN 1, P-FORM
Descriptor: MONOCYTE CHEMOATTRACTANT PROTEIN 1, SULFATE ION
Authors:Lubkowski, J, Bujacz, G, Boque, L, Wlodawer, A, Domaille, P.J, Handel, T.M.
Deposit date:1996-11-27
Release date:1997-03-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The structure of MCP-1 in two crystal forms provides a rare example of variable quaternary interactions.
Nat.Struct.Biol., 4, 1997
5UZG
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BU of 5uzg by Molmil
Crystal structure of Glorund qRRM1 domain
Descriptor: AT27789p, GLYCEROL, SULFATE ION
Authors:Teramoto, T, Hall, T.M.T.
Deposit date:2017-02-26
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition.
Cell Rep, 19, 2017
5V5D
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BU of 5v5d by Molmil
Room temperature (280K) crystal structure of Kaposi's sarcoma-associated herpesvirus protease in complex with allosteric inhibitor (compound 250)
Descriptor: 4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-(phenylamino)benzoic acid, ORF 17
Authors:Thompson, M.C, Acker, T.M, Fraser, J.S, Craik, C.S.
Deposit date:2017-03-14
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Allosteric Inhibitors, Crystallography, and Comparative Analysis Reveal Network of Coordinated Movement across Human Herpesvirus Proteases.
J. Am. Chem. Soc., 139, 2017
6NBS
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BU of 6nbs by Molmil
WT ERK2 with compound 2507-8
Descriptor: (5S)-5-benzyl-4,5-dihydro-1H-imidazol-2-amine, GLYCEROL, Mitogen-activated protein kinase 1, ...
Authors:Sammons, R.M, Perry, N.A, Cho, E.J, Kaoud, T.S, Zamora-Olivares, D.P, Piserchio, A, Houghten, R.A, Giulianotti, M, Li, Y, Debevec, G, Gurevich, V.V, Ghose, R, Iverson, T.M, Dalby, K.N.
Deposit date:2018-12-10
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Novel Class of Common Docking Domain Inhibitors That Prevent ERK2 Activation and Substrate Phosphorylation.
Acs Chem.Biol., 14, 2019
6NWW
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BU of 6nww by Molmil
Crystal structure of the RRM domain of S. pombe Puf1 in the P212121 space group
Descriptor: CHLORIDE ION, Pumilio domain-containing protein C56F2.08c
Authors:Qiu, C, Hall, T.M.T.
Deposit date:2019-02-07
Release date:2019-07-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.
Nucleic Acids Res., 47, 2019
1FUR
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BU of 1fur by Molmil
FUMARASE MUTANT H188N WITH BOUND SUBSTRATE L-MALATE AT PUTATIVE ACTIVATOR SITE
Descriptor: D-MALATE, FUMARASE C
Authors:Weaver, T.M, Lees, M, Banaszak, L.J.
Deposit date:1997-01-09
Release date:1997-07-23
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mutations of fumarase that distinguish between the active site and a nearby dicarboxylic acid binding site.
Protein Sci., 6, 1997
6NYV
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BU of 6nyv by Molmil
Structure of spastin AAA domain in complex with a quinazoline-based inhibitor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, N-(3-tert-butyl-1H-pyrazol-5-yl)-2-[(2R)-2-methylpiperazin-1-yl]quinazolin-4-amine, SULFATE ION, ...
Authors:Pisa, R, Cupido, T, Kapoor, T.M.
Deposit date:2019-02-12
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.425 Å)
Cite:Designing Allele-Specific Inhibitors of Spastin, a Microtubule-Severing AAA Protein.
J. Am. Chem. Soc., 141, 2019
5UTE
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BU of 5ute by Molmil
Kaposi's Sarcoma Herpesvirus Protease in Complex with Allosteric Inhibitor
Descriptor: 4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-[(4-methoxyphenyl)amino]benzoic acid, ORF 17
Authors:Acker, T.M, Gable, J, Bohn, M.-F, Craik, C.S.
Deposit date:2017-02-14
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Kaposi's Sarcoma Herpesvirus Protease in Complex with Allosteric Inhibitor
To Be Published
1EK5
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BU of 1ek5 by Molmil
STRUCTURE OF HUMAN UDP-GALACTOSE 4-EPIMERASE IN COMPLEX WITH NAD+
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, UDP-GALACTOSE 4-EPIMERASE
Authors:Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
Deposit date:2000-03-06
Release date:2000-05-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic evidence for Tyr 157 functioning as the active site base in human UDP-galactose 4-epimerase.
Biochemistry, 39, 2000
6NZC
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BU of 6nzc by Molmil
Crystal structure of E. coli fumarase C N326A variant with closed SS Loop at 1.40 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Weaver, T.M, May, J.F, Bhattacharyya, B.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.403 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020
4GZ5
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BU of 4gz5 by Molmil
Crystal structure of human O-GlcNAc Transferase with UDP-GlcNAc
Descriptor: SULFATE ION, UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
Authors:Lazarus, M.B, Jiang, J, Gloster, T.M, Zandberg, W.F, Vocadlo, D.J, Walker, S.
Deposit date:2012-09-06
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.075 Å)
Cite:Structural snapshots of the reaction coordinate for O-GlcNAc transferase.
Nat.Chem.Biol., 8, 2012
6NOF
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BU of 6nof by Molmil
Crystal structure of FBF-2 repeat 5 mutant (C363A, R364Y, Q367S) in complex with 8-nt RNA
Descriptor: 1,2-ETHANEDIOL, Fem-3 mRNA-binding factor 2, RNA (5'-R(*UP*GP*UP*AP*AP*AP*UP*A)-3')
Authors:McCann, K.L, Wang, Y, Qiu, C, Hall, T.M.T.
Deposit date:2019-01-16
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Engineering a conserved RNA regulatory protein repurposes its biological function in vivo .
Elife, 8, 2019
4GYW
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BU of 4gyw by Molmil
Crystal structure of human O-GlcNAc Transferase in complex with UDP and a glycopeptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Casein kinase II subunit alpha, SULFATE ION, ...
Authors:Lazarus, M.B, Jiang, J, Gloster, T.M, Zandberg, W.F, Vocadlo, D.J, Walker, S.
Deposit date:2012-09-05
Release date:2012-10-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural snapshots of the reaction coordinate for O-GlcNAc transferase.
Nat.Chem.Biol., 8, 2012
6NUI
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BU of 6nui by Molmil
Human Guanylate Kinase
Descriptor: Guanylate kinase
Authors:Sabo, T.M, Khan, N, Ban, D, Trigo-Mourino, P, Carneiro, M.G, Trent, J.O, Konrad, M, Lee, D.
Deposit date:2019-02-01
Release date:2019-06-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure and functional investigation of human guanylate kinase reveals allosteric networking and a crucial role for the enzyme in cancer.
J.Biol.Chem., 294, 2019
6NZ9
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BU of 6nz9 by Molmil
Crystal structure of E. coli fumarase C bound to citrate at 1.53 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Stuttgen, G.M, May, J.F, Bhattcharyya, B, Weaver, T.M.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.528 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020

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