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PDB: 118 件
7C94
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Crystal structure of the anti-human podoplanin antibody Fab fragment complex with glycopeptide
分子名称: GLYCEROL, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
著者Suzuki, K, Nakamura, S, Ogasawara, S, Naruchi, K, Shimabukuro, J, Tukahara, N, Kaneko, M.K, Kato, Y, Murata, T.
登録日2020-06-04
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Crystal structure of an anti-podoplanin antibody bound to a disialylated O-linked glycopeptide.
Biochem.Biophys.Res.Commun., 533, 2020
7DNS
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BU of 7dns by Molmil
Crystal structure of domain-swapped dimer of H5_Fold-0 Elsa; de novo designed protein with an asymmetric all-alpha topology
分子名称: GLYCEROL, de novo designed protein
著者Suzuki, K, Kobayashi, N, Murata, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N.
登録日2020-12-10
公開日2021-07-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.327 Å)
主引用文献Design of complicated all-alpha protein structures
Nat.Struct.Mol.Biol., 2024
7VW7
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BU of 7vw7 by Molmil
Crystal structure of the 2 ADP-AlF4-bound V1 complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
著者Suzuki, K, Shekhar, M, Gupta, C, Singharoy, A, Murata, T.
登録日2021-11-09
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.818 Å)
主引用文献Revealing a Hidden Intermediate of Rotatory Catalysis with X-ray Crystallography and Molecular Simulations.
Acs Cent.Sci., 8, 2022
7CW1
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BU of 7cw1 by Molmil
Crystal structure of a biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast, Pseudozyma antarctica, solved by getting the phase from anomalous scattering of uncovalently coordinated arsenic (cacodylate).
分子名称: CACODYLIC ACID, Cutinase-like enzyme, SODIUM ION
著者Suzuki, K.
登録日2020-08-27
公開日2020-09-16
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast, Pseudozyma antarctica, solved by getting the phase from anomalous scattering of uncovalently coordinated arsenic (cacodylate).
To Be Published
7CC4
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BU of 7cc4 by Molmil
A biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast Pseudozyma antarctica
分子名称: Cutinase-like enzyme, SODIUM ION
著者Suzuki, K, Watanabe, T, Kitamoto, H.
登録日2020-06-16
公開日2020-07-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast Pseudozyma antarctica
To Be Published
7CY3
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BU of 7cy3 by Molmil
Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. B47-9.
分子名称: CACODYLIC ACID, Cutinase, SODIUM ION
著者Suzuki, K, Koitabashi, M.
登録日2020-09-03
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. B47-9.
To Be Published
7CY9
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BU of 7cy9 by Molmil
Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. B47-9 solved by getting the phase from anomalous scattering of uncovalently coordinated arsenic (cacodylate).
分子名称: CACODYLIC ACID, Cutinase, SODIUM ION
著者Suzuki, K, Koitabashi, M.
登録日2020-09-03
公開日2020-09-30
最終更新日2020-12-16
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. B47-9 solved by getting the phase from anomalous scattering of uncovalently coordinated arsenic (cacodylate).
To Be Published
3WFL
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BU of 3wfl by Molmil
Crtstal structure of glycoside hydrolase family 5 beta-mannanase from Talaromyces trachyspermus
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
著者Suzuki, K, Ichinose, H, Kamino, K, Ogasawara, W, Kaneko, S, Fushinobu, S.
登録日2013-07-19
公開日2014-07-23
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Purification, cloning, functional expression, structure, and characterization of a thermostable beta-mannanase from Talaromyces trachyspermus and its efficiency in production of mannooligosaccharides from coffee wastes
To be Published
1KFX
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BU of 1kfx by Molmil
Crystal Structure of Human m-Calpain Form I
分子名称: M-CALPAIN LARGE SUBUNIT, M-CALPAIN SMALL SUBUNIT
著者Strobl, S, Fernandez-Catalan, C, Braun, M, Huber, R, Masumoto, H, Nakagawa, K, Irie, A, Sorimachi, H, Bourenkow, G, Bartunik, H, Suzuki, K, Bode, W.
登録日2001-11-23
公開日2001-12-07
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium.
Proc.Natl.Acad.Sci.USA, 97, 2000
1KFU
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BU of 1kfu by Molmil
Crystal Structure of Human m-Calpain Form II
分子名称: M-CALPAIN LARGE SUBUNIT, M-CALPAIN SMALL SUBUNIT
著者Strobl, S, Fernandez-Catalan, C, Braun, M, Huber, R, Masumoto, H, Nakagawa, K, Irie, A, Sorimachi, H, Bourenkow, G, Bartunik, H, Suzuki, K, Bode, W.
登録日2001-11-23
公開日2001-12-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium.
Proc.Natl.Acad.Sci.USA, 97, 2000
8Y6H
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BU of 8y6h by Molmil
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
分子名称: ATP-dependent translocase ABCB1,mNeonGreen, UIC2 Fab heavy chain, UIC2 Fab light chain, ...
著者Hamaguchi-Suzuki, N, Adachi, N, Moriya, T, Kawasaki, M, Suzuki, K, Anzai, N, Senda, T, Murata, T.
登録日2024-02-02
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (2.49 Å)
主引用文献Cryo-EM structure of P-glycoprotein bound to triple elacridar inhibitor molecules.
Biochem.Biophys.Res.Commun., 709, 2024
8Y6I
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BU of 8y6i by Molmil
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, ATP-dependent translocase ABCB1,mNeonGreen, CHOLESTEROL, ...
著者Hamaguchi-Suzuki, N, Adachi, N, Moriya, T, Kawasaki, M, Suzuki, K, Anzai, N, Senda, T, Murata, T.
登録日2024-02-02
公開日2024-04-17
実験手法ELECTRON MICROSCOPY (2.54 Å)
主引用文献Cryo-EM structure of P-glycoprotein bound to triple elacridar inhibitor molecules.
Biochem.Biophys.Res.Commun., 709, 2024
2E2F
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BU of 2e2f by Molmil
Solution structure of DSP
分子名称: Diapausin
著者Kouno, T, Mizuguchi, M, Suzuki, K, Kawano, K.
登録日2006-11-12
公開日2007-11-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The structure of a novel insect peptide explains its Ca2+ channel blocking and antifungal activities
Biochemistry, 46, 2007
8ZYQ
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BU of 8zyq by Molmil
Cryo-EM Structure of pimozide-bound hERG Channel
分子名称: 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one, Potassium voltage-gated channel subfamily H member 2
著者Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
登録日2024-06-18
公開日2024-09-18
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.18 Å)
主引用文献Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors.
Structure, 2024
8ZYP
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BU of 8zyp by Molmil
Cryo-EM Structure of E-4031-bound hERG Channel
分子名称: Potassium voltage-gated channel subfamily H member 2, ~{N}-[4-[1-[2-(6-methylpyridin-2-yl)ethyl]piperidin-4-yl]carbonylphenyl]methanesulfonamide
著者Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
登録日2024-06-18
公開日2024-09-18
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.19 Å)
主引用文献Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors.
Structure, 2024
8ZYN
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BU of 8zyn by Molmil
Cryo-EM Structure of inhibitor-free hERG Channel
分子名称: Potassium voltage-gated channel subfamily H member 2
著者Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
登録日2024-06-18
公開日2024-09-18
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors.
Structure, 2024
8ZYO
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BU of 8zyo by Molmil
Cryo-EM Structure of astemizole-bound hERG Channel
分子名称: 1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine, Potassium voltage-gated channel subfamily H member 2
著者Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
登録日2024-06-18
公開日2024-09-18
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.29 Å)
主引用文献Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors.
Structure, 2024
5XA3
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BU of 5xa3 by Molmil
Crystal Structure of P450BM3 with Benzyloxycarbonyl-L-prolyl-L-phenylalanine
分子名称: Bifunctional cytochrome P450/NADPH-P450 reductase, DIMETHYL SULFOXIDE, PHENYLALANINE, ...
著者Shoji, O, Yanagisawa, S, Stanfield, J.K, Suzuki, K, Kasai, C, Cong, Z, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2017-03-10
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Direct Hydroxylation of Benzene to Phenol by Cytochrome P450BM3 Triggered by Amino Acid Derivatives.
Angew. Chem. Int. Ed. Engl., 56, 2017
5B4V
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BU of 5b4v by Molmil
Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and an inhibitor methylmalonate
分子名称: 3-hydroxybutyrate dehydrogenase, CHLORIDE ION, METHYLMALONIC ACID, ...
著者Kanazawa, H, Tsunoda, M, Hoque, M.M, Suzuki, K, Yamamoto, T, Takenaka, A.
登録日2016-04-19
公開日2016-08-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase
Acta Crystallogr.,Sect.F, 72, 2016
5B4T
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BU of 5b4t by Molmil
Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and a substrate D-3-hydroxybutyrate
分子名称: (3R)-3-hydroxybutanoic acid, 3-hydroxybutyrate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Kanazawa, H, Tsunoda, M, Hoque, M.M, Suzuki, K, Yamamoto, T, Takenaka, A.
登録日2016-04-19
公開日2016-08-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase
Acta Crystallogr.,Sect.F, 72, 2016
5B4U
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BU of 5b4u by Molmil
Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and an inhibitor malonate
分子名称: 3-hydroxybutyrate dehydrogenase, CHLORIDE ION, MALONIC ACID, ...
著者Kanazawa, H, Tsunoda, M, Hoque, M.M, Suzuki, K, Yamamoto, T, Takenaka, A.
登録日2016-04-19
公開日2016-08-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase
Acta Crystallogr.,Sect.F, 72, 2016
1V28
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BU of 1v28 by Molmil
Solution structure of paralytic peptide of the wild Silkmoth, Antheraea yamamai
分子名称: Paralytic Peptide
著者Kawaguchi, K, Ying, A, Suzuki, K, Kumaki, Y, Demura, M, Nitta, K.
登録日2003-10-09
公開日2004-10-26
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural characterization of paralytic peptide of the wild Silkmoth Antheraea yamamai by NMR
To be Published
6M4B
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BU of 6m4b by Molmil
1510-N membrane-bound stomatin-specific protease S97A mutant
分子名称: Membrane-bound protease PH1510, SULFATE ION
著者Yokoyama, H, Suzuki, K.
登録日2020-03-06
公開日2020-06-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Inactive dimeric structure of the protease domain of stomatin operon partner protein.
Acta Crystallogr.,Sect.D, 76, 2020
1V53
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The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans
分子名称: 3-isopropylmalate dehydrogenase
著者Fujita, K, Minami, H, Suzuki, K, Tsunoda, M, Sekiguchi, T, Mizui, R, Tsuzaki, S, Nakamura, S, Takenaka, A.
登録日2003-11-20
公開日2005-02-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献The crystal structure of 3-isopropylmalate dehydrogenase from Bacillus coagulans
To be Published
1V5B
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The Structure Of The Mutant, S225A and E251L, Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans
分子名称: 3-isopropylmalate dehydrogenase, SULFATE ION
著者Fujita, K, Minami, H, Suzuki, K, Tsunoda, M, Sekiguchi, T, Mizui, R, Tsuzaki, S, Nakamura, S, Takenaka, A.
登録日2003-11-22
公開日2005-02-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal structure of a highly thermo-stabilized mutant of 3-isopropylmalate dehydrogenase from Bacillus coagulans: An evaluation of local packing density in the hydrophobic core
To be Published

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件を2024-11-06に公開中

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