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PDB: 959 results

1LYY
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AMYLOIDOGENIC VARIANT (ASP67HIS) OF HUMAN LYSOZYME
Descriptor: LYSOZYME
Authors:Sunde, M, Blake, C.C.F.
Deposit date:1997-01-16
Release date:1997-04-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis.
Nature, 385, 1997
1YYD
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BU of 1yyd by Molmil
High Resolution Crystal Structure of Manganese Peroxidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Sundaramoorthy, M, Youngs, H.L, Gold, M.H, Poulos, T.L.
Deposit date:2005-02-24
Release date:2005-05-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-Resolution Crystal Structure of Manganese Peroxidase: Substrate and Inhibitor Complexes.
Biochemistry, 44, 2005
8TDW
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ssRNA bound SAMHD1 T open
Descriptor: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, RNA (5'-R(P*CP*CP*GP*AP*CP*C)-3'), ...
Authors:Sung, M, Huynh, K, Han, S.
Deposit date:2023-07-05
Release date:2023-11-22
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1.
Nucleic Acids Res., 51, 2023
1YZP
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BU of 1yzp by Molmil
Substrate-free manganese peroxidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Sundaramoorthy, M, Youngs, H.L, Gold, M.H, Poulos, T.L.
Deposit date:2005-02-28
Release date:2005-05-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-Resolution Crystal Structure of Manganese Peroxidase: Substrate and Inhibitor Complexes.
Biochemistry, 44, 2005
8TDV
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ssRNA bound SAMHD1 T closed
Descriptor: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, RNA (5'-R(P*CP*CP*GP*AP*CP*CP*C)-3'), ...
Authors:Sung, M, Huynh, K, Han, S.
Deposit date:2023-07-05
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1.
Nucleic Acids Res., 51, 2023
1YZR
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BU of 1yzr by Molmil
Manganese peroxidase-Sm(III) complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Sundaramoorthy, M, Youngs, H.L, Gold, M.H, Poulos, T.L.
Deposit date:2005-02-28
Release date:2005-05-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-Resolution Crystal Structure of Manganese Peroxidase: Substrate and Inhibitor Complexes.
Biochemistry, 44, 2005
1YYG
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Manganese peroxidase complexed with Cd(II) inhibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Sundaramoorthy, M, Youngs, H.L, Gold, M.H, Poulos, T.L.
Deposit date:2005-02-24
Release date:2005-05-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-Resolution Crystal Structure of Manganese Peroxidase: Substrate and Inhibitor Complexes.
Biochemistry, 44, 2005
1WTA
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Crystal Structure of 5'-Deoxy-5'-methylthioadenosine from Aeropyrum pernix (R32 form)
Descriptor: 5'-methylthioadenosine phosphorylase, ADENINE, PHOSPHATE ION
Authors:Tsunoda, M, Murakami, Y, Nakamura, K.T.
Deposit date:2004-11-18
Release date:2006-02-07
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of 5'-Deoxy-5'-methylthioadenosine from Aeropyrum pernix (R32 form)
To be Published
3A07
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Crystal Structure of Actinohivin; Potent anti-HIV Protein
Descriptor: Actinohivin, SODIUM ION
Authors:Tsunoda, M, Suzuki, K, Sagara, T, Takenaka, A.
Deposit date:2009-03-04
Release date:2009-08-25
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Mechanism by which the lectin actinohivin blocks HIV infection of target cells
Proc.Natl.Acad.Sci.USA, 106, 2009
3AJJ
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Crystal Structure of d(CGCGGATf5UCGCG): 5-Formyluridine/Guanosine Base-pair in B-DNA
Descriptor: 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G)-3'
Authors:Tsunoda, M, Sakaue, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2010-06-07
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil
J Nucleic Acids, 2010, 2010
3AJL
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Crystal structure of d(CGCGGATf5UCGCG): 5-Formyluridine:guanosine Base-pair in B-DNA with DAPI
Descriptor: 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G)-3', 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, MAGNESIUM ION
Authors:Tsunoda, M, Sakaue, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2010-06-07
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil
J Nucleic Acids, 2010, 2010
3AJK
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Crystal structure of d(CGCGGATf5UCGCG): 5-Formyluridine:Guanosine Base-pair in B-DNA with Hoechst33258
Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G*)-3', MAGNESIUM ION
Authors:Tsunoda, M, Sakaue, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2010-06-07
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil
J Nucleic Acids, 2010, 2010
2DLC
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BU of 2dlc by Molmil
Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase
Descriptor: MAGNESIUM ION, O-(ADENOSINE-5'-O-YL)-N-(L-TYROSYL)PHOSPHORAMIDATE, T-RNA (76-MER), ...
Authors:Tsunoda, M, Kusakabe, Y, Tanaka, N, Nakamura, K.T.
Deposit date:2006-04-18
Release date:2007-06-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for recognition of cognate tRNA by tyrosyl-tRNA synthetase from three kingdoms.
Nucleic Acids Res., 35, 2007
2CPO
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BU of 2cpo by Molmil
CHLOROPEROXIDASE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLOROPEROXIDASE, ...
Authors:Sundaramoorthy, M, Poulos, T.L.
Deposit date:1996-02-10
Release date:1997-02-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of chloroperoxidase: a heme peroxidase--cytochrome P450 functional hybrid.
Structure, 3, 1995
2BPP
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BU of 2bpp by Molmil
PHOSPHOLIPASE A2 ENGINEERING. X-RAY STRUCTURAL AND FUNCTIONAL EVIDENCE FOR THE INTERACTION OF LYSINE-56 WITH SUBSTRATES
Descriptor: CALCIUM ION, PHOSPHOLIPASE A2
Authors:Sundaralingam, M.
Deposit date:1992-01-17
Release date:1993-10-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Phospholipase A2 engineering. X-ray structural and functional evidence for the interaction of lysine-56 with substrates.
Biochemistry, 30, 1991
3UD2
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BU of 3ud2 by Molmil
Crystal structure of Selenomethionine ZU5A-ZU5B protein domains of human erythrocyte ankyrin
Descriptor: Ankyrin-1, CHLORIDE ION, ETHANOL, ...
Authors:Yasunaga, M, Ipsaro, J.J, Mondragon, A.
Deposit date:2011-10-27
Release date:2012-02-22
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structurally Similar but Functionally Diverse ZU5 Domains in Human Erythrocyte Ankyrin.
J.Mol.Biol., 417, 2012
3UD1
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BU of 3ud1 by Molmil
Crystal structure of ZU5A-ZU5B domains of human erythrocyte ankyrin
Descriptor: Ankyrin-1, ETHANOL
Authors:Yasunaga, M, Ipsaro, J.J, Mondragon, A.
Deposit date:2011-10-27
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structurally Similar but Functionally Diverse ZU5 Domains in Human Erythrocyte Ankyrin.
J.Mol.Biol., 417, 2012
2EU0
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BU of 2eu0 by Molmil
The NMR ensemble structure of the Itk SH2 domain bound to a phosphopeptide
Descriptor: Lymphocyte cytosolic protein 2 phosphopeptide fragment, Tyrosine-protein kinase ITK/TSK
Authors:Sundd, M, Pletneva, E.V, Fulton, D.B, Andreotti, A.H.
Deposit date:2005-10-27
Release date:2006-02-07
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Molecular Details of Itk Activation by Prolyl Isomerization and Phospholigand Binding: The NMR Structure of the Itk SH2 Domain Bound to a Phosphopeptide.
J.Mol.Biol., 357, 2006
2KFV
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BU of 2kfv by Molmil
Structure of the amino-terminal domain of human FK506-binding protein 3 / Northeast Structural Genomics Consortium Target HT99A
Descriptor: FK506-binding protein 3
Authors:Sunnerhagen, M, Davis, T, Gutmanas, A, Fares, C, Ouyang, H, Lemak, A, Li, Y, Weigelt, J, Bountra, C, Edwards, A, Arrowsmith, C.H, Dhe-Paganon, S, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)
Deposit date:2009-02-27
Release date:2009-06-23
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structure of the N-terminal domain of FK506-binding protein 3
To be Published
2ETZ
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BU of 2etz by Molmil
The NMR minimized average structure of the Itk SH2 domain bound to a phosphopeptide
Descriptor: Lymphocyte cytosolic protein 2 phosphopeptide fragment, Tyrosine-protein kinase ITK/TSK
Authors:Sundd, M, Pletneva, E.V, Fulton, D.B, Andreotti, A.H.
Deposit date:2005-10-27
Release date:2006-02-07
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Molecular Details of Itk Activation by Prolyl Isomerization and Phospholigand Binding: The NMR Structure of the Itk SH2 Domain Bound to a Phosphopeptide.
J.Mol.Biol., 357, 2006
409D
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BU of 409d by Molmil
CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOBBLES
Descriptor: RNA (5'-R(*CP*CP*CP*IP*UP*GP*GP*G)-3')
Authors:Pan, B, Mitra, S.N, Sun, L, Hart, D, Sundaralingam, M.
Deposit date:1998-06-26
Release date:1999-01-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of an RNA octamer duplex r(CCCIUGGG)2 incorporating tandem I.U wobbles.
Nucleic Acids Res., 26, 1998
5T5H
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BU of 5t5h by Molmil
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
Descriptor: 40S ribosomal protein L14, 5.8S rRNA, 5S rRNA, ...
Authors:Liu, Z, Gutierrez-Vargas, C, Wei, J, Grassucci, R.A, Ramesh, M, Espina, N, Sun, M, Tutuncuoglu, B, Madison-Antenucci, S, Woolford Jr, J.L, Tong, L, Frank, J.
Deposit date:2016-08-31
Release date:2016-10-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit.
Proc.Natl.Acad.Sci.USA, 113, 2016
2RCY
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BU of 2rcy by Molmil
Crystal structure of Plasmodium falciparum pyrroline carboxylate reductase (MAL13P1.284) with NADP bound
Descriptor: GLYCEROL, MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Wernimont, A.K, Lew, J, Lin, Y.H, Ren, H, Sun, X, Khuu, C, Hassanali, A, Wasney, G, Zhao, Y, Kozieradzki, I, Schapira, M, Bochkarev, A, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Hui, R, Artz, J.D, Amani, M, Structural Genomics Consortium (SGC)
Deposit date:2007-09-20
Release date:2007-10-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Plasmodium falciparum pyrroline carboxylate reductase (MAL13P1.284) with NADP bound.
To be Published
2R77
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Crystal structure of phosphatidylethanolamine-binding protein, pfl0955c, from Plasmodium falciparum
Descriptor: Phosphatidylethanolamine-binding protein, putative
Authors:Wernimont, A.K, Lew, J, Kozieradzki, I, Lin, Y.H, Sun, X, Khuu, C, Crombette, L, Zhao, Y, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Sundstrom, M, Bochkarev, A, Hui, R, Artz, J.D, Xiao, T, Structural Genomics Consortium (SGC)
Deposit date:2007-09-07
Release date:2007-09-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of phosphatidylethanolamine-binding protein, pfl0955c, from Plasmodium falciparum.
To be Published
2RHD
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BU of 2rhd by Molmil
Crystal structure of Cryptosporidium parvum small GTPase RAB1A
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Small GTP binding protein rab1a
Authors:Dong, A, Xu, X, Lew, J, Lin, Y.H, Khuu, C, Sun, X, Qiu, W, Kozieradzki, I, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Sundstrom, M, Bochkarev, A, Hui, R, Sukumar, D, Structural Genomics Consortium (SGC)
Deposit date:2007-10-09
Release date:2007-10-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Crystal structure of Cryptosporidium parvum small GTPase RAB1A.
To be Published

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