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PDB: 57 results

6BG9
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HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL
Descriptor: RNA dimerization signal
Authors:Summers, M.F.
Deposit date:2017-10-27
Release date:2018-02-21
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (9 Å), SOLUTION NMR
Cite:Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.
Structure, 26, 2018
2ZNF
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HIGH-RESOLUTION STRUCTURE OF AN HIV ZINC FINGERLIKE DOMAIN VIA A NEW NMR-BASED DISTANCE GEOMETRY APPROACH
Descriptor: GAG POLYPROTEIN, ZINC ION
Authors:Summers, M.F, South, T.L, Kim, B, Hare, D.R.
Deposit date:1990-03-30
Release date:1991-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High-resolution structure of an HIV zinc fingerlike domain via a new NMR-based distance geometry approach.
Biochemistry, 29, 1990
2L1F
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Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography
Descriptor: RNA (65-MER), RNA (66-MER)
Authors:Summers, M.F, Irobalieva, R.N, Tolbert, B, Smalls-Manty, A, Iyalla, K, Loeliger, K, D'Souza, V, Khant, H, Schmid, M, Garcia, E, Telesnitsky, A, Chiu, W, Miyazaki, Y.
Deposit date:2010-07-28
Release date:2010-10-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography.
J.Mol.Biol., 404, 2010
6VVJ
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Cap1G-TPUA
Descriptor: RNA (130-MER)
Authors:Summers, M.F, Brown, J.D.
Deposit date:2020-02-18
Release date:2020-04-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for transcriptional start site control of HIV-1 RNA fate.
Science, 368, 2020
6VU1
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Cap3G-TAR-F1 is an RNA hairpin. The 1H-1H NOESY data was collected at 308 K in 10 mM KH2PO4 pH 7.4.
Descriptor: RNA (34-MER)
Authors:Summers, M.F, Brown, J.D.
Deposit date:2020-02-14
Release date:2020-04-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for transcriptional start site control of HIV-1 RNA fate.
Science, 368, 2020
1AAF
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BU of 1aaf by Molmil
NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1
Descriptor: HIV-1 NUCLEOCAPSID PROTEIN, ZINC ION
Authors:Summers, M.F, Henderson, L.E, Chance, M.R, Bess Junior, J.W, South, T.L, Blake, P.R, Sagi, I, Perez-Alvarado, G, Sowder, R.C, Hare, D.R, Arthur, L.O.
Deposit date:1992-04-06
Release date:1994-01-31
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution-state structure of the nucleocapsid protein from HIV-1.
Protein Sci., 1, 1992
1MFS
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BU of 1mfs by Molmil
DYNAMICAL BEHAVIOR OF THE HIV-1 NUCLEOCAPSID PROTEIN; NMR, 30 STRUCTURES
Descriptor: HIV-1 NUCLEOCAPSID PROTEIN, ZINC ION
Authors:Summers, M.F, Turner, B.G, De Guzman, R.N, Lee, B.M, Tjandra, N.
Deposit date:1998-04-01
Release date:1998-06-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Dynamical behavior of the HIV-1 nucleocapsid protein.
J.Mol.Biol., 279, 1998
1HVN
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BU of 1hvn by Molmil
ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HIV-1 NUCLEOCAPSID PROTEIN: NMR STRUCTURE OF THE COMPLEX WITH THE PSI-SITE ANALOG, D/ACGCC
Descriptor: DNA (5'-D(P*AP*CP*GP*CP*C)-3'), Hiv-1 Nucleocapsid Zinc Finger, ZINC ION
Authors:South, T.L, Summers, M.F.
Deposit date:1992-12-08
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Zinc- and sequence-dependent binding to nucleic acids by the N-terminal zinc finger of the HIV-1 nucleocapsid protein: NMR structure of the complex with the Psi-site analog, dACGCC.
Protein Sci., 2, 1993
1HVO
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BU of 1hvo by Molmil
ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HIV-1 NUCLEOCAPSID PROTEIN: NMR STRUCTURE OF THE COMPLEX WITH THE PSI-SITE ANALOG, D/ACGCC
Descriptor: DNA (5'-D(P*AP*CP*GP*CP*C)-3'), Hiv-1 Nucleocapsid Zinc Finger, ZINC ION
Authors:South, T.L, Summers, M.F.
Deposit date:1992-12-08
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Zinc- and sequence-dependent binding to nucleic acids by the N-terminal zinc finger of the HIV-1 nucleocapsid protein: NMR structure of the complex with the Psi-site analog, dACGCC.
Protein Sci., 2, 1993
1ZRP
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BU of 1zrp by Molmil
SOLUTION-STATE STRUCTURE BY NMR OF ZINC-SUBSTITUTED RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS
Descriptor: RUBREDOXIN, ZINC ION
Authors:Blake, P.R, Park, J.B, Zhou, Z.H, Hare, D.R, Adams, M.W.W, Summers, M.F.
Deposit date:1992-07-10
Release date:1993-10-31
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution-state structure by NMR of zinc-substituted rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus.
Protein Sci., 1, 1992
6WA3
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BU of 6wa3 by Molmil
Solution NMR structure of the myristoylated feline immunodeficiency virus matrix protein
Descriptor: MYRISTIC ACID, Matrix protein
Authors:Brown, J.B, Summers, H.R, Brown, L.A, Marchant, J, Canova, P.N, O'Hern, C.T, Abbott, S, Nyaunu, C, Maxwell, S, Johnson, T, Moser, M, Ablan, S.D, Carter, H, Freed, E.O, Summers, M.F.
Deposit date:2020-03-24
Release date:2020-07-22
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Structural and Mechanistic Studies of the Rare Myristoylation Signal of the Feline Immunodeficiency Virus.
J.Mol.Biol., 432, 2020
6WA4
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BU of 6wa4 by Molmil
Solution NMR structure of the unmyristoylated feline immunodeficiency virus matrix protein
Descriptor: Matrix protein
Authors:Brown, J.B, Summers, H.R, Brown, L.A, Marchant, J, Canova, P.N, O'Hern, C.T, Abbott, S.T, Nyaunu, C, Maxwell, S, Johnson, T, Moser, M.B, Carter, H, Ablan, S, Freed, E.O, Summers, M.F.
Deposit date:2020-03-24
Release date:2020-07-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and Mechanistic Studies of the Rare Myristoylation Signal of the Feline Immunodeficiency Virus.
J.Mol.Biol., 432, 2020
6WA5
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Solution NMR Structure of the G4L/Q5K/G6S (NOS) Unmyristoylated Feline Immunodeficiency Virus Matrix Protein
Descriptor: Matrix protein
Authors:Brown, J.B, Summers, H.R, Brown, L.A, Marchant, J, Canova, P.N, O'Hern, C.T, Abbott, S.T, Nyaunu, C, Maxwell, S, Johnson, T, Moser, M.B, Ablan, S.A, Carter, H, Freed, E.O, Summers, M.F.
Deposit date:2020-03-24
Release date:2020-07-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and Mechanistic Studies of the Rare Myristoylation Signal of the Feline Immunodeficiency Virus.
J.Mol.Biol., 432, 2020
2N1R
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BU of 2n1r by Molmil
NMR Structure of the Myristylated Feline Immunodeficiency Virus Matrix Protein
Descriptor: Matrix protein p15
Authors:Brown, L.A, Cox, C, Button, R.J, Baptiste, J, Bahlow, K, Spurrier, V, Luttge, B.G, Kuo, L, Freed, E.O, Summers, M.F, Kyser, J, Summers, H.R.
Deposit date:2015-04-15
Release date:2015-05-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of the myristylated feline immunodeficiency virus matrix protein.
Viruses, 7, 2015
1WWG
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BU of 1wwg by Molmil
NMR Structure Determined for MLV NC Complex with RNA Sequence UAUCUG
Descriptor: 5'-R(P*UP*AP*UP*CP*UP*G)-3', Nucleoprotein p10, ZINC ION
Authors:Dey, A, York, D, Smalls-Mantey, A, Summers, M.F.
Deposit date:2005-01-05
Release date:2005-04-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)
Biochemistry, 44, 2005
1WWF
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NMR Structure Determined for MLV NC Complex with RNA Sequence CCUCCGU
Descriptor: 5'-R(P*CP*CP*UP*CP*CP*GP*U)-3', Nucleoprotein p10, ZINC ION
Authors:Dey, A, York, D, Smalls-Mantey, A, Summers, M.F.
Deposit date:2005-01-05
Release date:2005-04-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)
Biochemistry, 44, 2005
1WWD
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BU of 1wwd by Molmil
NMR structure determined for MLV NC complex with RNA sequence AACAGU
Descriptor: 5'-R(P*AP*AP*CP*AP*GP*U)-3', Nucleoprotein p10, ZINC ION
Authors:Dey, A, York, D, Smalls-Mantey, A, Summers, M.F.
Deposit date:2005-01-05
Release date:2005-03-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)
Biochemistry, 44, 2005
1WWE
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BU of 1wwe by Molmil
NMR Structure Determined for MLV NC complex with RNA Sequence UUUUGCU
Descriptor: 5'-R(P*UP*UP*UP*UP*GP*CP*U)-3', Nucleoprotein p10, ZINC ION
Authors:Dey, A, York, D, Smalls-Mantey, A, Summers, M.F.
Deposit date:2005-01-05
Release date:2005-03-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus(,)
Biochemistry, 44, 2005
1U6P
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BU of 1u6p by Molmil
NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein
Descriptor: 101-MER, Gag polyprotein, ZINC ION
Authors:D'Souza, V, Summers, M.F.
Deposit date:2004-07-30
Release date:2004-11-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus
Nature, 431, 2004
1S9S
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BU of 1s9s by Molmil
SOLUTION STRUCTURE OF MLV PSI SITE
Descriptor: MLV Psi encapsidation site
Authors:D'Souza, V, Dey, A, Habib, D, Summers, M.F.
Deposit date:2004-02-05
Release date:2004-04-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the 101-nucleotide core encapsidation signal of the Moloney Murine Leukemia Virus.
J.Mol.Biol., 337, 2004
1UPH
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BU of 1uph by Molmil
HIV-1 Myristoylated Matrix
Descriptor: GAG POLYPROTEIN
Authors:Tang, C, Loeliger, E, Luncsford, P, Kinde, I, Beckett, D, Summers, M.F.
Deposit date:2003-10-01
Release date:2004-01-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Entropic Switch Regulates Myristate Exposure in the HIV-1 Matrix Protein
Proc.Natl.Acad.Sci.USA, 101, 2004
1IML
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BU of 1iml by Molmil
CYSTEINE RICH INTESTINAL PROTEIN, NMR, 48 STRUCTURES
Descriptor: CYSTEINE RICH INTESTINAL PROTEIN, ZINC ION
Authors:Perez-Alvarado, G.C, Kosa, J.L, Louis, H.A, Beckerle, M.C, Winge, D.R, Summers, M.F.
Deposit date:1995-12-23
Release date:1996-07-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the cysteine-rich intestinal protein, CRIP.
J.Mol.Biol., 257, 1996
2KYD
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BU of 2kyd by Molmil
RDC and RCSA refinement of an A-form RNA: Improvements in Major Groove Width
Descriptor: RNA (5'-R(*CP*UP*AP*GP*UP*UP*AP*GP*CP*UP*AP*AP*CP*UP*AP*G)-3')
Authors:Tolbert, B.S, Summers, M.F, Miyazaki, Y, Barton, S, Kinde, B, Stark, P, Singh, R, Bax, A, Case, D.
Deposit date:2010-05-24
Release date:2010-07-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H-13C residual dipolar coupling on refinement.
J.Biomol.Nmr, 47, 2010
2NV3
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Solution structure of L8A mutant of HIV-1 myristoylated matrix protein
Descriptor: Gag polyprotein, MYRISTIC ACID
Authors:Saad, J.S, Loeliger, E, Luncsford, P, Liriano, M, Tai, J, Kim, A, Miller, J, Joshi, A, Freed, E.O, Summers, M.F.
Deposit date:2006-11-10
Release date:2007-02-06
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Point mutations in the HIV-1 matrix protein turn off the myristyl switch.
J.Mol.Biol., 366, 2007
2N1Q
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HIV-1 Core Packaging Signal
Descriptor: RNA_(155-MER)
Authors:Keane, S.C, Summers, M.F.
Deposit date:2015-04-15
Release date:2015-05-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:RNA structure. Structure of the HIV-1 RNA packaging signal.
Science, 348, 2015

 

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