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PDB: 1984 results

2B7D
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Factor VIIa Inhibitors: Chemical Optimization, Preclinical Pharmacokinetics, Pharmacodynamics, and Efficacy in a Baboon Thrombosis Model
Descriptor: (2R)-2-[5-(5-CARBAMIMIDOYL-1H-BENZOIMIDAZOL-2-YL)-6,2'-DIHYDROXY-5'-UREIDOMETHYL-BIPHENYL-3-YL]-SUCCINIC ACID, Coagulation factor VII, Tissue factor
Authors:Young, W.B, Mordenti, J, Torkelson, S, Shrader, W.D, Kolesnikov, A, Rai, R, Liu, L, Hu, H, Leahy, E.M, Green, M.J, Sprengeler, P.A, Katz, B.A, Yu, C, Janc, J.W, Elrod, K.C, Marzec, U.M, Hanson, S.R.
Deposit date:2005-10-04
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Factor VIIa inhibitors: Chemical optimization, preclinical pharmacokinetics, pharmacodynamics, and efficacy in an arterial baboon thrombosis model.
Bioorg.Med.Chem.Lett., 16, 2006
4QHK
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UCA (unbound) from CH103 Lineage
Descriptor: UCA heavy chain, UCA light chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2014-05-28
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.487 Å)
Cite:Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains.
Proc.Natl.Acad.Sci.USA, 111, 2014
3IDJ
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BU of 3idj by Molmil
Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 Fab' fragment in complex with gp41 Peptide analog ELD(Orn)WAS
Descriptor: 2F5 Fab heavy chain, 2F5 Fab light chain, gp41 MPER peptide analog
Authors:Julien, J.-P, Bryson, S, Pai, E.F.
Deposit date:2009-07-21
Release date:2010-02-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications.
J.Virol., 83, 2009
1IGT
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BU of 1igt by Molmil
STRUCTURE OF IMMUNOGLOBULIN
Descriptor: IGG2A INTACT ANTIBODY - MAB231, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Harris, L.J, Larson, S.B, Hasel, K.W, McPherson, A.
Deposit date:1996-10-25
Release date:1997-07-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Refined structure of an intact IgG2a monoclonal antibody.
Biochemistry, 36, 1997
3IDG
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BU of 3idg by Molmil
Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ALDKWD
Descriptor: 2F5 Fab heavy chain, 2F5 Fab light chain, gp41 MPER peptide
Authors:Julien, J.P, Bryson, S, Pai, E.F.
Deposit date:2009-07-21
Release date:2010-03-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications.
J.Virol., 83, 2009
2Z75
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T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate
Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R.
Deposit date:2007-08-15
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme
J.Mol.Biol., 373, 2007
1JS9
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Brome Mosaic Virus
Descriptor: Coat protein, HEXAETHYLENE GLYCOL, MAGNESIUM ION
Authors:Lucas, R.W, Larson, S.B, McPherson, A.
Deposit date:2001-08-16
Release date:2002-04-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The crystallographic structure of brome mosaic virus.
J.Mol.Biol., 317, 2002
2Z74
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T. tengcongensis glmS ribozyme bound to glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R.
Deposit date:2007-08-15
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme
J.Mol.Biol., 373, 2007
1XSE
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BU of 1xse by Molmil
Crystal Structure of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1
Descriptor: 11beta-hydroxysteroid dehydrogenase type 1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Ogg, D, Elleby, B, Norstrom, C, Stefansson, K, Abrahmsen, L, Oppermann, U, Svensson, S.
Deposit date:2004-10-19
Release date:2004-11-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of guinea pig 11beta-hydroxysteroid dehydrogenase type 1 provides a model for enzyme-lipid bilayer interactions
J.Biol.Chem., 280, 2005
3IDM
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BU of 3idm by Molmil
Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 Fab' fragment in complex with gp41 Peptide analog ELD(Nrg)WAS
Descriptor: 2F5 Fab heavy chain, 2F5 Fab light chain, gp41 MPER peptide analog
Authors:Julien, J.-P, Bryson, S, Pai, E.F.
Deposit date:2009-07-21
Release date:2010-02-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications.
J.Virol., 83, 2009
4H7C
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BU of 4h7c by Molmil
Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 in complex with 1-{4-[(2-methyl-1-piperidinyl)sulfonyl]phenyl}-2-pyrrolidinone
Descriptor: 1-(4-{[(2R)-2-methylpiperidin-1-yl]sulfonyl}phenyl)-1,3-dihydro-2H-pyrrol-2-one, Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Turnbull, A.P, Heinrich, D, Jamieson, S.M.F, Flanagan, J.U, Silva, S, Rigoreau, L.J.M, Trivier, E, Soudy, C, Samlal, S.S, Owen, P.J, Schroeder, E, Raynham, T, Denny, W.A.
Deposit date:2012-09-20
Release date:2013-03-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Synthesis and structure-activity relationships for 1-(4-(piperidin-1-ylsulfonyl)phenyl)pyrrolidin-2-ones as novel non-carboxylate inhibitors of the aldo-keto reductase enzyme AKR1C3.
Eur.J.Med.Chem., 62C, 2013
1YHW
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BU of 1yhw by Molmil
Crystal Structure of PAK1 kinase domain with one point mutations (K299R)
Descriptor: Serine/threonine-protein kinase PAK 1
Authors:Lei, M, Robinson, M.A, Harrison, S.C.
Deposit date:2005-01-10
Release date:2005-05-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Active Conformation of the PAK1 Kinase Domain
Structure, 13, 2005
3IDN
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BU of 3idn by Molmil
Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 Fab' fragment in complex with gp41 Peptide analog ELD(Paf)WAS
Descriptor: 2F5 Fab heavy chain, 2F5 Fab light chain, gp41 MPER peptide analog
Authors:Julien, J.-P, Bryson, S, Pai, E.F.
Deposit date:2009-07-21
Release date:2010-02-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications.
J.Virol., 83, 2009
5T6J
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BU of 5t6j by Molmil
Structure of the MIND Complex Shows a Regulatory Focus of Yeast Kinetochore Assembly
Descriptor: Kinetochore protein SPC24, Kinetochore protein SPC25, Kinetochore-associated protein DSN1
Authors:Valverde, R, Jenni, S, Dimitrova, Y, Khin, Y, Harrison, S.C.
Deposit date:2016-09-01
Release date:2016-11-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.752 Å)
Cite:Structure of the MIND Complex Defines a Regulatory Focus for Yeast Kinetochore Assembly.
Cell, 167, 2016
4E4S
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BU of 4e4s by Molmil
Crystal structure of Pika GITRL
Descriptor: GLYCEROL, MAGNESIUM ION, Tumor necrosis factor ligand superfamily member 18
Authors:Kumar, P.R, Bhosle, R, Bonanno, J, Chowdhury, S, Gizzi, A, Glen, S, Hillerich, B, Hammonds, J, Seidel, R, Toro, R, Nathenson, S.G, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Deposit date:2012-03-13
Release date:2012-03-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of GITRL from Ochotona princeps
to be published
5TF3
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BU of 5tf3 by Molmil
Crystal Structure of Protein of Unknown Function YPO2564 from Yersinia pestis
Descriptor: 1,2-ETHANEDIOL, Putative membrane protein
Authors:Kim, Y, Chhor, G, Endres, M, Babnigg, G, Anderson, W.F, Crosson, S, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-09-23
Release date:2016-10-19
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal Structure of Protein of Unknown Function YPO2564 from Yersinia pestis
To Be Published
3ISB
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BU of 3isb by Molmil
Binary complex of human DNA polymerase beta with a gapped DNA
Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Beard, W.A, Shock, D.D, Batra, V.K, Pedersen, L.C, Wilson, S.H.
Deposit date:2009-08-25
Release date:2009-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA polymerase beta substrate specificity: side chain modulation of the "A-rule".
J.Biol.Chem., 284, 2009
4PJ3
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BU of 4pj3 by Molmil
Structural insight into the function and evolution of the spliceosomal helicase Aquarius, Structure of Aquarius in complex with AMPPNP
Descriptor: Intron-binding protein aquarius, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:De, I, Bessonov, S, Hofele, R, dos Santos, K.F, Will, C.L, Urlaub, H, Luhrmann, R, Pena, V.
Deposit date:2014-05-11
Release date:2015-01-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The RNA helicase Aquarius exhibits structural adaptations mediating its recruitment to spliceosomes.
Nat.Struct.Mol.Biol., 22, 2015
1YHV
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BU of 1yhv by Molmil
Crystal Structure of PAK1 kinase domain with two point mutations (K299R, T423E)
Descriptor: Serine/threonine-protein kinase PAK 1
Authors:Lei, M, Robinson, M.A, Harrison, S.C.
Deposit date:2005-01-10
Release date:2005-05-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Active Conformation of the PAK1 Kinase Domain
Structure, 13, 2005
5U0U
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BU of 5u0u by Molmil
Crystal Structure of DH270.1 (unliganded, single-chain Fv) from the DH270 Broadly Neutralizing N332-glycan Dependent Lineage
Descriptor: DH270.1 single-chain variable fragment
Authors:Fera, D, Harrison, S.C.
Deposit date:2016-11-27
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.428 Å)
Cite:Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.
Sci Transl Med, 9, 2017
5U15
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BU of 5u15 by Molmil
Crystal Structure of DH270.UCA3 (unliganded) from the DH270 Broadly Neutralizing N332-glycan Dependent Lineage
Descriptor: DH270.UCA3 heavy chain, DH270.UCA3 light chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2016-11-27
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.
Sci Transl Med, 9, 2017
4QHL
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BU of 4qhl by Molmil
I3.2 (unbound) from CH103 Lineage
Descriptor: I3 heavy chain, UCA light chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2014-05-28
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.153 Å)
Cite:Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains.
Proc.Natl.Acad.Sci.USA, 111, 2014
5TQA
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BU of 5tqa by Molmil
Crystal Structure of DH270.6 (unliganded) from the DH270 Broadly Neutralizing N332-Glycan Dependent Lineage
Descriptor: DH270.6 Fab heavy chain, DH270.6 Fab light chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2016-10-23
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.723 Å)
Cite:Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.
Sci Transl Med, 9, 2017
5TRP
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BU of 5trp by Molmil
Crystal Structure of the Unliganded DH270 Cooperating Lineage Member DH272
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DH272 Fab heavy chain, DH272 Fab light chain, ...
Authors:Fera, D, Harrison, S.C.
Deposit date:2016-10-27
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.692 Å)
Cite:Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.
Sci Transl Med, 9, 2017
5TPP
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BU of 5tpp by Molmil
Crystal Structure of DH270.5 (unliganded) from the DH270 Broadly Neutralizing N332-glycan Dependent Lineage
Descriptor: CITRIC ACID, DH270.5 Fab heavy chain, DH270.5 Fab light chain, ...
Authors:Fera, D, Harrison, S.C.
Deposit date:2016-10-20
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies.
Sci Transl Med, 9, 2017

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